Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-403 |
| Cow position: | chr5:26183980-26184391 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 10-431 |
| Cow position: | chr5:46737460-46737035 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 13-253 |
| Cow position: | chr5:34697733-34697980 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 15-402 |
| Cow position: | chr5:24295752-24296143 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 15-430 |
| Cow position: | chr5:10855683-10855260 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 15-431 |
| Cow position: | chr5:2915581-2915993 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 15-431 |
| Cow position: | chr5:4070355-4070775 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 15-431 |
| Cow position: | chr5:37733483-37733912 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 19-331 |
| Cow position: | chr5:49519699-49520009 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 19-431 |
| Cow position: | chr5:3502967-3502547 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 12 |
| Conread position: | 37-263 |
| Cow position: | chr5:54791472-54791240 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr5:64780855-64780455 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 82-429 |
| Cow position: | chr5:30580546-30580892 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 82-430 |
| Cow position: | chr5:57481338-57480981 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 82-431 |
| Cow position: | chr5:18560204-18559851 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 82-431 |
| Cow position: | chr5:55629196-55629542 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 14 |
| Conread position: | 82-431 |
| Cow position: | chr5:76096256-76096610 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 84-430 |
| Cow position: | chr5:40923442-40923118 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 85-429 |
| Cow position: | chr5:31100223-31099879 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 85-431 |
| Cow position: | chr5:3787133-3787496 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 85-431 |
| Cow position: | chr5:7275045-7275388 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 87-430 |
| Cow position: | chr5:10813543-10813192 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 87-431 |
| Cow position: | chr5:4017990-4017655 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 72, 6 |
| Conread position: | 96-429 |
| Cow position: | chr5:48807519-48807174 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 309 |
| Conread position: | 96-431 |
| Cow position: | chr5:47829862-47829516 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 323 |
| Conread position: | 106-430 |
| Cow position: | chr5:4756956-4756625 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 106-430 |
| Cow position: | chr5:59061865-59062194 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 110-236 |
| Cow position: | chr5:57000554-57000685 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 110-286 |
| Cow position: | chr5:23236145-23236331 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 110-349 |
| Cow position: | chr5:29767352-29767594 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 110-430 |
| Cow position: | chr5:4684575-4684247 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 276 |
| Conread position: | 110-430 |
| Cow position: | chr5:35301327-35301656 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 277 |
| Conread position: | 110-431 |
| Cow position: | chr5:18273988-18274306 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 110-431 |
| Cow position: | chr5:23230217-23230537 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 52 |
| Conread position: | 110-431 |
| Cow position: | chr5:28242261-28242573 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 83, 132 |
| Conread position: | 110-431 |
| Cow position: | chr5:34190145-34190481 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 296 |
| Conread position: | 110-431 |
| Cow position: | chr5:45701543-45701876 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 112-314 |
| Cow position: | chr5:27908040-27907827 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 112-365 |
| Cow position: | chr5:28014267-28014524 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 47, 128 |
| Conread position: | 112-389 |
| Cow position: | chr5:18665006-18665285 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 112-398 |
| Cow position: | chr5:4386468-4386757 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 47, 132 |
| Conread position: | 112-430 |
| Cow position: | chr5:18121251-18120924 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 280 |
| Conread position: | 112-430 |
| Cow position: | chr5:31707794-31708121 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 275 |
| Conread position: | 112-430 |
| Cow position: | chr5:32773996-32774323 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 280 |
| Conread position: | 112-430 |
| Cow position: | chr5:41376623-41376296 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 275 |
| Conread position: | 112-431 |
| Cow position: | chr5:10842150-10841821 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 291 |
| Conread position: | 112-431 |
| Cow position: | chr5:10920070-10920394 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 228 |
| Conread position: | 118-431 |
| Cow position: | chr5:34201702-34201381 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 39, 8 |
| Conread position: | 121-398 |
| Cow position: | chr5:41960506-41960228 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 38, 191 |
| Conread position: | 121-430 |
| Cow position: | chr5:41527557-41527244 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 251 |
| Conread position: | 121-431 |
| Cow position: | chr5:23755226-23754926 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 121-431 |
| Cow position: | chr5:24099897-24100208 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 107 |
| Conread position: | 121-431 |
| Cow position: | chr5:49223252-49222931 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 195 |
| Conread position: | 121-431 |
| Cow position: | chr5:50870858-50871166 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 115 |
| Conread position: | 122-390 |
| Cow position: | chr5:46808553-46808824 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 139-431 |
| Cow position: | chr5:2975051-2975349 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 224 |
| Conread position: | 140-431 |
| Cow position: | chr5:40758185-40758479 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 148-428 |
| Cow position: | chr5:31122319-31122031 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 238 |
| Conread position: | 178-431 |
| Cow position: | chr5:58151501-58151246 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 179-428 |
| Cow position: | chr5:5666275-5666035 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 192-428 |
| Cow position: | chr5:43988421-43988654 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 14, 163 |
| Conread position: | 251-431 |
| Cow position: | chr5:12642054-12641874 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 125, 157 |
| Conread position: | 258-431 |
| Cow position: | chr5:58191374-58191201 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 307-431 |
| Cow position: | chr5:49118901-49118779 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.