Cow genome map


           Conread name:
           rtra01_c16r1.y1
        

               Conread position:
               1-403
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 84
               

               Conread position:
               10-431
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               13-253
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 24
               

               Conread position:
               15-402
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 44
               

               Conread position:
               15-430
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 61
               

               Conread position:
               15-431
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 24
               

               Conread position:
               15-431
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 60
               

               Conread position:
               15-431
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 47
               

               Conread position:
               19-331
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 12
               

               Conread position:
               19-431
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 12
               

               Conread position:
               37-263
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               82-429
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 14
               

               Conread position:
               82-430
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 14
               

               Conread position:
               82-431
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 14
               

               Conread position:
               82-431
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 14
               

               Conread position:
               82-431
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 14
               

               Conread position:
               84-430
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               110, 12
               

               Conread position:
               85-429
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 11
               

               Conread position:
               85-431
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 11
               

               Conread position:
               85-431
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 11
               

               Conread position:
               87-430
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 9
               

               Conread position:
               87-431
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               72, 6
               

               Conread position:
               96-429
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 309
               

               Conread position:
               96-431
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 323
               

               Conread position:
               106-430
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 11
               

               Conread position:
               106-430
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 11
               

               Conread position:
               110-236
               

               Cow position:
               
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               49, 30
               

               Conread position:
               110-286
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               110-349
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               45, 91
               

               Conread position:
               110-430
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 276
               

               Conread position:
               110-430
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 277
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 49
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 52
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               83, 132
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 296
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 25
               

               Conread position:
               112-314
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               112-365
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               47, 128
               

               Conread position:
               112-389
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 54
               

               Conread position:
               112-398
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               219
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               47, 132
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 280
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 275
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 280
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 275
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 291
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 228
               

               Conread position:
               118-431
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               39, 8
               

               Conread position:
               121-398
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               217
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               38, 191
               

               Conread position:
               121-430
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 251
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               117, 29
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 107
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 195
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 115
               

               Conread position:
               122-390
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 54
               

               Conread position:
               139-431
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 224
               

               Conread position:
               140-431
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 61
               

               Conread position:
               148-428
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 238
               

               Conread position:
               178-431
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               75, 15
               

               Conread position:
               179-428
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               59, 14
               

               Conread position:
               192-428
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               14, 163
               

               Conread position:
               251-431
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               125, 157
               

               Conread position:
               258-431
               

               Cow position:
               
               

               Alignm length:
               176
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               93, 97
               

               Conread position:
               307-431
               

               Cow position:
               
               

               Alignm length:
               125
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               65, 0
               
Show alignments to all cow chromosomes.