Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-430 |
| Cow position: | chr6:17597030-17596600 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 6-431 |
| Cow position: | chr6:13848341-13848763 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 25 |
| Conread position: | 9-431 |
| Cow position: | chr6:38272837-38273265 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 10-397 |
| Cow position: | chr6:43792302-43791903 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 13-431 |
| Cow position: | chr6:914905-915328 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 13-431 |
| Cow position: | chr6:25792486-25792061 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 15-431 |
| Cow position: | chr6:50332-49909 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 15-431 |
| Cow position: | chr6:1821348-1820932 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 15-431 |
| Cow position: | chr6:28104586-28104167 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 15-431 |
| Cow position: | chr6:30273622-30273197 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 15-431 |
| Cow position: | chr6:39333597-39333173 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 15-431 |
| Cow position: | chr6:51731356-51731777 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 15-431 |
| Cow position: | chr6:55541984-55541563 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 16-431 |
| Cow position: | chr6:16591247-16591653 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 19-431 |
| Cow position: | chr6:7178015-7177597 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 22-431 |
| Cow position: | chr6:10339353-10338949 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 37-431 |
| Cow position: | chr6:703511-703908 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr6:15139876-15139477 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr6:25215515-25215911 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr6:34890825-34890431 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 82-236 |
| Cow position: | chr6:3276028-3275868 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 82-430 |
| Cow position: | chr6:10250265-10249912 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 14 |
| Conread position: | 82-431 |
| Cow position: | chr6:21974010-21974366 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 82-431 |
| Cow position: | chr6:24240747-24241101 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 87-427 |
| Cow position: | chr6:10679765-10680104 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 87-430 |
| Cow position: | chr6:2376029-2376370 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 87-430 |
| Cow position: | chr6:40379286-40378936 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 96-403 |
| Cow position: | chr6:12627055-12627370 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 210 |
| Conread position: | 100-427 |
| Cow position: | chr6:27170937-27171273 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 287 |
| Conread position: | 106-403 |
| Cow position: | chr6:13310014-13309707 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 110-342 |
| Cow position: | chr6:28134276-28134518 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 110-430 |
| Cow position: | chr6:5749291-5749620 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 293 |
| Conread position: | 110-430 |
| Cow position: | chr6:45587318-45587643 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 137 |
| Conread position: | 110-430 |
| Cow position: | chr6:47047814-47047485 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 279 |
| Conread position: | 110-431 |
| Cow position: | chr6:58066098-58066412 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 128, 58 |
| Conread position: | 112-350 |
| Cow position: | chr6:13945281-13945528 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 47, 232 |
| Conread position: | 112-430 |
| Cow position: | chr6:7139972-7139645 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 112-430 |
| Cow position: | chr6:28703341-28703014 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 275 |
| Conread position: | 112-430 |
| Cow position: | chr6:44002042-44002367 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 274 |
| Conread position: | 112-430 |
| Cow position: | chr6:44149179-44148853 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 112-431 |
| Cow position: | chr6:184173-183846 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 112-431 |
| Cow position: | chr6:8759927-8759596 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 112-431 |
| Cow position: | chr6:58601850-58602176 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 274 |
| Conread position: | 116-405 |
| Cow position: | chr6:58460945-58460650 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 117-430 |
| Cow position: | chr6:27528642-27528324 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 156 |
| Conread position: | 118-431 |
| Cow position: | chr6:52694402-52694722 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 241 |
| Conread position: | 120-431 |
| Cow position: | chr6:5948405-5948082 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 300 |
| Conread position: | 120-431 |
| Cow position: | chr6:36528588-36528894 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 121-350 |
| Cow position: | chr6:16053487-16053727 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 192 |
| Conread position: | 121-430 |
| Cow position: | chr6:28187442-28187143 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 36, 182 |
| Conread position: | 121-430 |
| Cow position: | chr6:35875331-35875015 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 129 |
| Conread position: | 121-431 |
| Cow position: | chr6:8203566-8203891 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 121-431 |
| Cow position: | chr6:11723815-11723502 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 121-431 |
| Cow position: | chr6:39374692-39374995 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 34, 59 |
| Conread position: | 121-431 |
| Cow position: | chr6:40553204-40552885 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 240 |
| Conread position: | 121-431 |
| Cow position: | chr6:40865943-40865630 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 174 |
| Conread position: | 121-431 |
| Cow position: | chr6:41228823-41229140 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 144-431 |
| Cow position: | chr6:64717723-64718018 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 257 |
| Conread position: | 145-431 |
| Cow position: | chr6:69143975-69144265 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 49, 188 |
| Conread position: | 151-387 |
| Cow position: | chr6:2577389-2577613 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 151-431 |
| Cow position: | chr6:59617507-59617786 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 211-431 |
| Cow position: | chr6:26777690-26777473 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 213-427 |
| Cow position: | chr6:12533282-12533503 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 238-431 |
| Cow position: | chr6:17047846-17048037 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 138, 146 |
| Conread position: | 257-430 |
| Cow position: | chr6:65897425-65897253 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 77, 17 |
Show alignments to all cow chromosomes.