Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-373 |
| Cow position: | chr7:65872258-65871878 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 1-431 |
| Cow position: | chr7:46747346-46747777 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 99 |
| Conread position: | 2-410 |
| Cow position: | chr7:25136203-25136620 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 191, 67 |
| Conread position: | 2-415 |
| Cow position: | chr7:54581225-54581628 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 2-431 |
| Cow position: | chr7:5261571-5261135 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 2-431 |
| Cow position: | chr7:27788316-27788742 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 34 |
| Conread position: | 2-431 |
| Cow position: | chr7:29471836-29472244 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 44 |
| Conread position: | 2-431 |
| Cow position: | chr7:49828979-49828549 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 6-427 |
| Cow position: | chr7:14138241-14137811 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 10-422 |
| Cow position: | chr7:59138992-59139389 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 11-431 |
| Cow position: | chr7:18445395-18444970 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 15-427 |
| Cow position: | chr7:8143614-8143194 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-430 |
| Cow position: | chr7:7259883-7260304 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 15-431 |
| Cow position: | chr7:5308749-5308320 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 15 |
| Conread position: | 15-431 |
| Cow position: | chr7:24807117-24806698 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 15-431 |
| Cow position: | chr7:25440866-25441285 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-431 |
| Cow position: | chr7:33405028-33404598 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 18-390 |
| Cow position: | chr7:996113-996487 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 18-431 |
| Cow position: | chr7:10430057-10429638 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 19-431 |
| Cow position: | chr7:55536562-55536138 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 34-431 |
| Cow position: | chr7:13532527-13532121 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 37-431 |
| Cow position: | chr7:444873-444472 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr7:39793256-39793643 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 40-431 |
| Cow position: | chr7:64239599-64239205 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 10 |
| Conread position: | 82-431 |
| Cow position: | chr7:3126119-3126476 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 82-431 |
| Cow position: | chr7:21986834-21987190 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 85-263 |
| Cow position: | chr7:24878449-24878264 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 85-431 |
| Cow position: | chr7:1609203-1608850 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 90-431 |
| Cow position: | chr7:58995011-58995348 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 163, 69 |
| Conread position: | 93-430 |
| Cow position: | chr7:33311503-33311162 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 137 |
| Conread position: | 96-374 |
| Cow position: | chr7:1012059-1011779 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 121 |
| Conread position: | 96-430 |
| Cow position: | chr7:6721584-6721926 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 278 |
| Conread position: | 105-406 |
| Cow position: | chr7:25433835-25434135 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 74, 13 |
| Conread position: | 106-431 |
| Cow position: | chr7:39097090-39096756 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 110-427 |
| Cow position: | chr7:21311908-21312226 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 49, 169 |
| Conread position: | 110-430 |
| Cow position: | chr7:20514329-20514002 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 265 |
| Conread position: | 110-430 |
| Cow position: | chr7:23250077-23250406 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-430 |
| Cow position: | chr7:62445695-62445365 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 281 |
| Conread position: | 110-430 |
| Cow position: | chr7:66070669-66070344 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 110-431 |
| Cow position: | chr7:67430026-67430343 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 112-321 |
| Cow position: | chr7:3299709-3299489 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 44, 209 |
| Conread position: | 112-429 |
| Cow position: | chr7:64350952-64351272 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 112-430 |
| Cow position: | chr7:11462680-11462353 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 276 |
| Conread position: | 112-430 |
| Cow position: | chr7:48804978-48804650 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 264 |
| Conread position: | 112-431 |
| Cow position: | chr7:43396955-43396626 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 166 |
| Conread position: | 112-431 |
| Cow position: | chr7:51015718-51016028 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 91 |
| Conread position: | 112-431 |
| Cow position: | chr7:52763745-52764072 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 275 |
| Conread position: | 112-431 |
| Cow position: | chr7:58337580-58337260 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 160 |
| Conread position: | 117-429 |
| Cow position: | chr7:21126209-21125894 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 121-429 |
| Cow position: | chr7:67800291-67800609 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 266 |
| Conread position: | 121-430 |
| Cow position: | chr7:20060955-20061272 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 165 |
| Conread position: | 121-431 |
| Cow position: | chr7:546311-546623 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 121-431 |
| Cow position: | chr7:38398287-38398604 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 246 |
| Conread position: | 121-431 |
| Cow position: | chr7:42871610-42871929 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 282 |
| Conread position: | 121-431 |
| Cow position: | chr7:45947685-45947365 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 280 |
| Conread position: | 122-430 |
| Cow position: | chr7:14437-14125 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 172 |
| Conread position: | 122-431 |
| Cow position: | chr7:20773869-20773557 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 97 |
| Conread position: | 122-431 |
| Cow position: | chr7:55041017-55040699 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 253 |
| Conread position: | 122-431 |
| Cow position: | chr7:67490158-67490471 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 199 |
| Conread position: | 131-431 |
| Cow position: | chr7:33070932-33070625 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 268 |
| Conread position: | 132-431 |
| Cow position: | chr7:49730959-49731262 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 251 |
| Conread position: | 141-431 |
| Cow position: | chr7:42305342-42305071 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 167-431 |
| Cow position: | chr7:40320809-40321049 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 210, 27 |
| Conread position: | 168-431 |
| Cow position: | chr7:63387249-63387520 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 232 |
| Conread position: | 215-431 |
| Cow position: | chr7:45952205-45952421 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 239-431 |
| Cow position: | chr7:949137-949330 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 155 |
| Conread position: | 251-431 |
| Cow position: | chr7:66906853-66907033 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 125, 142 |
Show alignments to all cow chromosomes.