Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-381 |
| Cow position: | chr8:23135050-23134675 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 140 |
| Conread position: | 1-431 |
| Cow position: | chr8:50929559-50929132 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 105 |
| Conread position: | 1-431 |
| Cow position: | chr8:60061952-60062382 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 2-345 |
| Cow position: | chr8:17312588-17312943 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 7-431 |
| Cow position: | chr8:10742107-10741673 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 9-431 |
| Cow position: | chr8:41644140-41643713 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 26 |
| Conread position: | 11-427 |
| Cow position: | chr8:56884079-56884496 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 13-427 |
| Cow position: | chr8:2168972-2168552 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 15-380 |
| Cow position: | chr8:9736793-9737171 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 15-400 |
| Cow position: | chr8:6764737-6764346 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-430 |
| Cow position: | chr8:42485469-42485882 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 15-431 |
| Cow position: | chr8:14590330-14589904 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 80 |
| Conread position: | 15-431 |
| Cow position: | chr8:32317994-32317581 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-431 |
| Cow position: | chr8:33589936-33590356 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 15-431 |
| Cow position: | chr8:35470850-35471275 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 15-431 |
| Cow position: | chr8:45794203-45793782 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 15-431 |
| Cow position: | chr8:50995336-50995760 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 60 |
| Conread position: | 15-431 |
| Cow position: | chr8:59261391-59260975 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 19-345 |
| Cow position: | chr8:8912031-8912370 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 20-431 |
| Cow position: | chr8:50960052-50959640 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 11 |
| Conread position: | 23-431 |
| Cow position: | chr8:3786189-3786603 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 23-431 |
| Cow position: | chr8:25523951-25524365 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 31-429 |
| Cow position: | chr8:12313840-12313432 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 37-431 |
| Cow position: | chr8:3748626-3748226 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr8:3855450-3855051 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 50-431 |
| Cow position: | chr8:47660733-47660348 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 82-431 |
| Cow position: | chr8:4688018-4688374 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 85-303 |
| Cow position: | chr8:44920-44695 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 108, 11 |
| Conread position: | 87-393 |
| Cow position: | chr8:32041142-32040824 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 95-430 |
| Cow position: | chr8:51068368-51068025 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 96-431 |
| Cow position: | chr8:53428116-53428461 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 155 |
| Conread position: | 106-431 |
| Cow position: | chr8:24914678-24914347 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 110-331 |
| Cow position: | chr8:9963863-9963644 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 79 |
| Conread position: | 110-336 |
| Cow position: | chr8:28878658-28878890 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 110-399 |
| Cow position: | chr8:9639519-9639818 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 110-430 |
| Cow position: | chr8:34349314-34349643 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-430 |
| Cow position: | chr8:39820095-39820424 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 277 |
| Conread position: | 110-431 |
| Cow position: | chr8:47674489-47674809 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 110-431 |
| Cow position: | chr8:47887490-47887817 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 291 |
| Conread position: | 111-372 |
| Cow position: | chr8:41740398-41740651 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 127, 28 |
| Conread position: | 111-431 |
| Cow position: | chr8:38392271-38392599 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 249 |
| Conread position: | 112-374 |
| Cow position: | chr8:14631018-14630745 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 112-430 |
| Cow position: | chr8:22570659-22570332 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 275 |
| Conread position: | 112-431 |
| Cow position: | chr8:1347605-1347277 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 112-431 |
| Cow position: | chr8:8400467-8400130 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 43, 182 |
| Conread position: | 112-431 |
| Cow position: | chr8:39194568-39194239 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 281 |
| Conread position: | 115-291 |
| Cow position: | chr8:39591607-39591420 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 121-387 |
| Cow position: | chr8:47075812-47076085 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 38, 105 |
| Conread position: | 121-390 |
| Cow position: | chr8:45691360-45691087 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 39, 74 |
| Conread position: | 121-402 |
| Cow position: | chr8:11803472-11803759 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 121-430 |
| Cow position: | chr8:37932750-37933068 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 266 |
| Conread position: | 121-431 |
| Cow position: | chr8:9539052-9538741 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 248 |
| Conread position: | 121-431 |
| Cow position: | chr8:14927230-14926910 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 239 |
| Conread position: | 121-431 |
| Cow position: | chr8:23772296-23772606 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 167 |
| Conread position: | 121-431 |
| Cow position: | chr8:30486747-30486438 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 138 |
| Conread position: | 121-431 |
| Cow position: | chr8:49218380-49218715 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 312 |
| Conread position: | 122-362 |
| Cow position: | chr8:21205225-21205467 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 122-430 |
| Cow position: | chr8:58184939-58184643 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 122-431 |
| Cow position: | chr8:30155757-30156074 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 264 |
| Conread position: | 130-431 |
| Cow position: | chr8:44700648-44700954 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 151-431 |
| Cow position: | chr8:2386876-2387162 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 215 |
| Conread position: | 179-431 |
| Cow position: | chr8:12542206-12541942 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 94, 62 |
| Conread position: | 213-431 |
| Cow position: | chr8:29923596-29923378 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 224-431 |
| Cow position: | chr8:9944154-9943953 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 112 |
| Conread position: | 240-430 |
| Cow position: | chr8:49295265-49295080 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 156 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.