Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 14-431 |
| Cow position: | chr9:6250497-6250910 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 15-276 |
| Cow position: | chr9:59481596-59481327 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-426 |
| Cow position: | chr9:4533699-4534115 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 15-431 |
| Cow position: | chr9:827904-827483 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 15-431 |
| Cow position: | chr9:21410502-21410931 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 15-431 |
| Cow position: | chr9:30673580-30674005 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 15-431 |
| Cow position: | chr9:51180974-51180554 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 15-431 |
| Cow position: | chr9:54925743-54926161 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 287 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 99, 32 |
| Conread position: | 19-281 |
| Cow position: | chr9:3005036-3004766 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 19-430 |
| Cow position: | chr9:37161609-37161189 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 19-431 |
| Cow position: | chr9:42310879-42311317 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 28-428 |
| Cow position: | chr9:20939523-20939932 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 37-425 |
| Cow position: | chr9:7003957-7004353 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-429 |
| Cow position: | chr9:5005213-5005609 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-429 |
| Cow position: | chr9:17304748-17304352 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr9:1995159-1994781 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr9:7060849-7060440 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 292 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr9:37969981-37969583 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 82-360 |
| Cow position: | chr9:22654848-22655135 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 82-431 |
| Cow position: | chr9:9014344-9014696 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 82-431 |
| Cow position: | chr9:18508554-18508200 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 82-431 |
| Cow position: | chr9:27036171-27036526 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 85-431 |
| Cow position: | chr9:13474501-13474144 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 87-281 |
| Cow position: | chr9:7105155-7104950 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 87-380 |
| Cow position: | chr9:28679248-28679543 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 106, 59 |
| Conread position: | 87-430 |
| Cow position: | chr9:50093963-50093612 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 96-431 |
| Cow position: | chr9:2212422-2212765 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 253 |
| Conread position: | 97-429 |
| Cow position: | chr9:6977612-6977941 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 95, 64 |
| Conread position: | 105-267 |
| Cow position: | chr9:47003470-47003641 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 106-429 |
| Cow position: | chr9:26567896-26568219 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 106-431 |
| Cow position: | chr9:12913072-12913408 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 106-431 |
| Cow position: | chr9:22436261-22436576 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 107-333 |
| Cow position: | chr9:12113784-12114023 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 110-257 |
| Cow position: | chr9:2497675-2497521 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 110-284 |
| Cow position: | chr9:26553864-26554038 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 106, 49 |
| Conread position: | 110-430 |
| Cow position: | chr9:8781613-8781303 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 110-430 |
| Cow position: | chr9:51211979-51212306 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 216 |
| Conread position: | 110-430 |
| Cow position: | chr9:64015374-64015047 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 275 |
| Conread position: | 110-431 |
| Cow position: | chr9:9707422-9707744 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 83, 43 |
| Conread position: | 111-431 |
| Cow position: | chr9:26083272-26082934 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 298 |
| Conread position: | 112-389 |
| Cow position: | chr9:44384561-44384850 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 112-430 |
| Cow position: | chr9:1074878-1074551 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 275 |
| Conread position: | 112-430 |
| Cow position: | chr9:31066016-31066343 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 275 |
| Conread position: | 112-430 |
| Cow position: | chr9:47043258-47043585 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 280 |
| Conread position: | 112-430 |
| Cow position: | chr9:50792011-50792340 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 277 |
| Conread position: | 112-431 |
| Cow position: | chr9:4942511-4942182 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 276 |
| Conread position: | 112-431 |
| Cow position: | chr9:38677445-38677770 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 269 |
| Conread position: | 121-362 |
| Cow position: | chr9:1981570-1981819 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 157 |
| Conread position: | 121-364 |
| Cow position: | chr9:7158631-7158380 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 121-383 |
| Cow position: | chr9:26737220-26737487 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 121-430 |
| Cow position: | chr9:1250690-1250373 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 265 |
| Conread position: | 121-430 |
| Cow position: | chr9:27783494-27783810 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 270 |
| Conread position: | 121-430 |
| Cow position: | chr9:30828048-30828366 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 285 |
| Conread position: | 121-431 |
| Cow position: | chr9:4308054-4307739 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 124 |
| Conread position: | 121-431 |
| Cow position: | chr9:17063077-17062760 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 266 |
| Conread position: | 121-431 |
| Cow position: | chr9:19158226-19157903 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 121-431 |
| Cow position: | chr9:25188408-25188715 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 19 |
| Conread position: | 123-431 |
| Cow position: | chr9:44819451-44819759 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 174 |
| Conread position: | 163-431 |
| Cow position: | chr9:28000873-28001150 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 255 |
| Conread position: | 243-431 |
| Cow position: | chr9:29026483-29026299 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 134, 87 |
| Conread position: | 269-431 |
| Cow position: | chr9:17312845-17313003 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 301-431 |
| Cow position: | chr9:31090675-31090804 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 302-431 |
| Cow position: | chr9:34769642-34769770 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 88 |
Show alignments to all cow chromosomes.