Cow genome map

Conread name: rtra01_c16r1.y1

Conread position: 1-429
Cow position:
Alignm length: 443
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 62

Conread position: 2-240
Cow position:
Alignm length: 249
Alignm identity: 178
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 32, 72

Conread position: 2-360
Cow position:
Alignm length: 367
Alignm identity: 260
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 64, 33

Conread position: 2-429
Cow position:
Alignm length: 443
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 73

Conread position: 2-431
Cow position:
Alignm length: 442
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 25

Conread position: 2-431
Cow position:
Alignm length: 440
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 42

Conread position: 7-431
Cow position:
Alignm length: 440
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 43

Conread position: 8-431
Cow position:
Alignm length: 438
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 50

Conread position: 9-431
Cow position:
Alignm length: 438
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 26

Conread position: 10-431
Cow position:
Alignm length: 433
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 27

Conread position: 15-398
Cow position:
Alignm length: 396
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 58

Conread position: 15-430
Cow position:
Alignm length: 428
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 32

Conread position: 15-430
Cow position:
Alignm length: 428
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 15-431
Cow position:
Alignm length: 435
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 15-431
Cow position:
Alignm length: 434
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 15-431
Cow position:
Alignm length: 426
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 15

Conread position: 15-431
Cow position:
Alignm length: 426
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 15-431
Cow position:
Alignm length: 431
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 32

Conread position: 16-430
Cow position:
Alignm length: 431
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 34

Conread position: 19-430
Cow position:
Alignm length: 427
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 29

Conread position: 23-431
Cow position:
Alignm length: 418
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 14

Conread position: 37-431
Cow position:
Alignm length: 402
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position:
Alignm length: 407
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position:
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 27

Conread position: 37-431
Cow position:
Alignm length: 408
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 43-431
Cow position:
Alignm length: 399
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 14

Conread position: 82-389
Cow position:
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 14

Conread position: 82-429
Cow position:
Alignm length: 359
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 14

Conread position: 82-431
Cow position:
Alignm length: 363
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 10

Conread position: 82-431
Cow position:
Alignm length: 362
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 335

Conread position: 85-431
Cow position:
Alignm length: 357
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 11

Conread position: 85-431
Cow position:
Alignm length: 354
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 11

Conread position: 87-430
Cow position:
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 87-430
Cow position:
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 87-431
Cow position:
Alignm length: 360
Alignm identity: 249
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 36, 171

Conread position: 96-343
Cow position:
Alignm length: 254
Alignm identity: 181
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 59, 0

Conread position: 96-427
Cow position:
Alignm length: 343
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 196

Conread position: 96-430
Cow position:
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 86

Conread position: 96-431
Cow position:
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 296

Conread position: 97-431
Cow position:
Alignm length: 347
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 320

Conread position: 100-430
Cow position:
Alignm length: 343
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 264

Conread position: 106-401
Cow position:
Alignm length: 306
Alignm identity: 222
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 10, 106

Conread position: 106-429
Cow position:
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 11

Conread position: 106-430
Cow position:
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 110-322
Cow position:
Alignm length: 226
Alignm identity: 174
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 38, 68

Conread position: 110-349
Cow position:
Alignm length: 248
Alignm identity: 186
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 49, 241

Conread position: 110-373
Cow position:
Alignm length: 272
Alignm identity: 193
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 48, 208

Conread position: 110-385
Cow position:
Alignm length: 287
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 110-429
Cow position:
Alignm length: 332
Alignm identity: 223
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 53, 161

Conread position: 110-430
Cow position:
Alignm length: 331
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 276

Conread position: 110-430
Cow position:
Alignm length: 332
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 217

Conread position: 110-430
Cow position:
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 283

Conread position: 110-430
Cow position:
Alignm length: 332
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 277

Conread position: 110-431
Cow position:
Alignm length: 336
Alignm identity: 230
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 82, 166

Conread position: 110-431
Cow position:
Alignm length: 338
Alignm identity: 237
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 47, 63

Conread position: 110-431
Cow position:
Alignm length: 327
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 132

Conread position: 110-431
Cow position:
Alignm length: 335
Alignm identity: 238
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 46, 82

Conread position: 110-431
Cow position:
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 271

Conread position: 110-431
Cow position:
Alignm length: 333
Alignm identity: 226
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 84, 44

Conread position: 110-431
Cow position:
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 15

Conread position: 111-422
Cow position:
Alignm length: 320
Alignm identity: 213
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 81, 48

Conread position: 112-263
Cow position:
Alignm length: 162
Alignm identity: 123
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 112-342
Cow position:
Alignm length: 234
Alignm identity: 162
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 131, 13

Conread position: 112-375
Cow position:
Alignm length: 277
Alignm identity: 203
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 45, 238

Conread position: 112-389
Cow position:
Alignm length: 290
Alignm identity: 214
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 45, 121

Conread position: 112-429
Cow position:
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 295

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 243

Conread position: 112-430
Cow position:
Alignm length: 329
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 274

Conread position: 112-430
Cow position:
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 291

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 275

Conread position: 112-430
Cow position:
Alignm length: 326
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 143

Conread position: 112-430
Cow position:
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 145

Conread position: 112-430
Cow position:
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 262

Conread position: 112-430
Cow position:
Alignm length: 331
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 294

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 276

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 275

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 275

Conread position: 112-431
Cow position:
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 69

Conread position: 112-431
Cow position:
Alignm length: 339
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 13

Conread position: 112-431
Cow position:
Alignm length: 330
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 279

Conread position: 112-431
Cow position:
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 176

Conread position: 115-430
Cow position:
Alignm length: 327
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 272

Conread position: 121-403
Cow position:
Alignm length: 289
Alignm identity: 199
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 69, 190

Conread position: 121-405
Cow position:
Alignm length: 299
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 121-426
Cow position:
Alignm length: 314
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 160

Conread position: 121-429
Cow position:
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 68

Conread position: 121-430
Cow position:
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 128

Conread position: 121-430
Cow position:
Alignm length: 321
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 266

Conread position: 121-430
Cow position:
Alignm length: 321
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 266

Conread position: 121-430
Cow position:
Alignm length: 314
Alignm identity: 223
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 74

Conread position: 121-430
Cow position:
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 207

Conread position: 121-430
Cow position:
Alignm length: 321
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 267

Conread position: 121-430
Cow position:
Alignm length: 321
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 266

Conread position: 121-431
Cow position:
Alignm length: 324
Alignm identity: 212
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 73, 27

Conread position: 121-431
Cow position:
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 266

Conread position: 121-431
Cow position:
Alignm length: 323
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 12

Conread position: 121-431
Cow position:
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 59

Conread position: 121-431
Cow position:
Alignm length: 320
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 36

Conread position: 121-431
Cow position:
Alignm length: 323
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 159

Conread position: 121-431
Cow position:
Alignm length: 323
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 268

Conread position: 122-389
Cow position:
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 111

Conread position: 122-430
Cow position:
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 251

Conread position: 123-431
Cow position:
Alignm length: 319
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 279

Conread position: 130-431
Cow position:
Alignm length: 313
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 94

Conread position: 131-430
Cow position:
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 272

Conread position: 135-431
Cow position:
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 26

Conread position: 142-430
Cow position:
Alignm length: 301
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 262

Conread position: 146-431
Cow position:
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 96

Conread position: 151-431
Cow position:
Alignm length: 290
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 250

Conread position: 157-431
Cow position:
Alignm length: 284
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 243

Conread position: 219-431
Cow position:
Alignm length: 215
Alignm identity: 165
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 19, 160

Conread position: 239-428
Cow position:
Alignm length: 195
Alignm identity: 154
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 97, 155

Conread position: 298-431
Cow position:
Alignm length: 135
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 78, 94

Show alignments to all cow chromosomes.