Cow genome map
| Conread name: | unkn-MI-P-NA-afr-g-11-1-UM.s1 |
| Conread position: | 4-444 |
| Cow position: | chr1:31365007-31365461 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 5-443 |
| Cow position: | chr1:40575307-40574840 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 5-444 |
| Cow position: | chr1:11291020-11291482 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 5-444 |
| Cow position: | chr1:17011642-17012113 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 282 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 5-444 |
| Cow position: | chr1:48246931-48246458 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 6-447 |
| Cow position: | chr1:88374716-88375156 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 121, 90 |
| Conread position: | 9-426 |
| Cow position: | chr1:31328412-31328845 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 120, 11 |
| Conread position: | 9-449 |
| Cow position: | chr1:44100310-44100777 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 11-425 |
| Cow position: | chr1:61310306-61309867 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 296 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 11-440 |
| Cow position: | chr1:28711977-28711519 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 11-444 |
| Cow position: | chr1:44044868-44044408 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 21-444 |
| Cow position: | chr1:58336914-58336464 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 113-442 |
| Cow position: | chr1:82912170-82912515 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 113-444 |
| Cow position: | chr1:8555296-8554957 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chr1:33896708-33896368 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 201, 60 |
| Conread position: | 113-444 |
| Cow position: | chr1:56164516-56164175 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 113-444 |
| Cow position: | chr1:57423873-57424215 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 113-444 |
| Cow position: | chr1:60340267-60339928 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chr1:66999978-66999641 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 113-444 |
| Cow position: | chr1:71561605-71561947 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 113-444 |
| Cow position: | chr1:82653631-82653291 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 201, 137 |
| Conread position: | 113-444 |
| Cow position: | chr1:85792646-85792307 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chr1:86547174-86547513 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 113-449 |
| Cow position: | chr1:29363261-29362917 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 201, 52 |
| Conread position: | 113-450 |
| Cow position: | chr1:31397659-31397311 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 120-434 |
| Cow position: | chr1:98658947-98659270 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 132, 128 |
| Conread position: | 122-444 |
| Cow position: | chr1:33852245-33851911 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 122-447 |
| Cow position: | chr1:11860291-11860617 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 114, 53 |
| Conread position: | 127-442 |
| Cow position: | chr1:18241566-18241884 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 71 |
| Conread position: | 127-444 |
| Cow position: | chr1:56490804-56490477 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 127-444 |
| Cow position: | chr1:59209196-59209525 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 127-450 |
| Cow position: | chr1:21088367-21088032 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 130-444 |
| Cow position: | chr1:31417561-31417888 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 130-444 |
| Cow position: | chr1:89426523-89426199 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 143-444 |
| Cow position: | chr1:82565439-82565129 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 171, 35 |
| Conread position: | 145-444 |
| Cow position: | chr1:13451140-13450830 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 145-444 |
| Cow position: | chr1:39544701-39544395 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 165, 90 |
| Conread position: | 145-444 |
| Cow position: | chr1:67834204-67834515 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 145-445 |
| Cow position: | chr1:57662960-57662650 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 147-444 |
| Cow position: | chr1:56724090-56723784 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 169-444 |
| Cow position: | chr1:80358271-80358555 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 145, 9 |
| Conread position: | 172-444 |
| Cow position: | chr1:49495316-49495599 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 187-444 |
| Cow position: | chr1:95240262-95239994 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 205-427 |
| Cow position: | chr1:89481642-89481417 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 207-444 |
| Cow position: | chr1:40054228-40053980 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 214-444 |
| Cow position: | chr1:21356019-21356255 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 113, 49 |
| Conread position: | 229-444 |
| Cow position: | chr1:1460363-1460577 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 239-444 |
| Cow position: | chr1:20422888-20423104 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 250-444 |
| Cow position: | chr1:47541456-47541258 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 116 |
Show alignments to all cow chromosomes.