Cow genome map
| Conread name: | unkn-MI-P-NA-afr-g-11-1-UM.s1 |
| Conread position: | 1-444 |
| Cow position: | chr3:46860329-46860799 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 314 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 3-444 |
| Cow position: | chr3:46680398-46679934 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 3-446 |
| Cow position: | chr3:32622070-32622543 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 5-359 |
| Cow position: | chr3:63270350-63269988 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 5-444 |
| Cow position: | chr3:42448074-42447609 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 5-444 |
| Cow position: | chr3:56339449-56339918 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 315 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 5-449 |
| Cow position: | chr3:20381510-20381039 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 10-444 |
| Cow position: | chr3:19755985-19756447 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 11-443 |
| Cow position: | chr3:27919384-27918939 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 11-444 |
| Cow position: | chr3:2906808-2907265 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 11-444 |
| Cow position: | chr3:7157763-7158212 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 312 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 11-444 |
| Cow position: | chr3:7170161-7169716 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 13-444 |
| Cow position: | chr3:6686767-6686314 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 48 |
| Conread position: | 20-444 |
| Cow position: | chr3:64016426-64016859 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 23-444 |
| Cow position: | chr3:42052207-42052644 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 284 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 110-449 |
| Cow position: | chr3:19720827-19721172 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 51 |
| Conread position: | 112-444 |
| Cow position: | chr3:19800332-19800674 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 113-432 |
| Cow position: | chr3:30331642-30331972 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 113-444 |
| Cow position: | chr3:2918306-2917964 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chr3:3523865-3523523 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 113-444 |
| Cow position: | chr3:29330438-29330767 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chr3:37969885-37969549 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 113-444 |
| Cow position: | chr3:42433062-42432722 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 196, 27 |
| Conread position: | 113-444 |
| Cow position: | chr3:45033591-45033245 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chr3:47177429-47177772 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 113-444 |
| Cow position: | chr3:53516456-53516116 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 113-444 |
| Cow position: | chr3:64651472-64651130 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 113-444 |
| Cow position: | chr3:68699120-68699462 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 113-444 |
| Cow position: | chr3:75040317-75040659 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 113-445 |
| Cow position: | chr3:19879497-19879160 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 201, 65 |
| Conread position: | 113-449 |
| Cow position: | chr3:18860256-18859910 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 122-444 |
| Cow position: | chr3:24315304-24314970 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 37, 243 |
| Conread position: | 122-444 |
| Cow position: | chr3:47080578-47080907 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 127-444 |
| Cow position: | chr3:36118492-36118165 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 127-444 |
| Cow position: | chr3:41210904-41211231 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 127-444 |
| Cow position: | chr3:66890134-66890459 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 127-447 |
| Cow position: | chr3:42994843-42995176 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 110, 106 |
| Conread position: | 127-448 |
| Cow position: | chr3:19889773-19890101 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 187, 22 |
| Conread position: | 127-449 |
| Cow position: | chr3:40339283-40339616 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 144-444 |
| Cow position: | chr3:19737395-19737084 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 145-419 |
| Cow position: | chr3:6783180-6782902 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 145-444 |
| Cow position: | chr3:68872944-68873251 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 169-444 |
| Cow position: | chr3:14438978-14439257 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 192-449 |
| Cow position: | chr3:52654129-52654382 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 122, 64 |
| Conread position: | 196-444 |
| Cow position: | chr3:24589247-24589502 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 60 |
| Conread position: | 196-449 |
| Cow position: | chr3:32616234-32616495 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 118, 16 |
| Conread position: | 216-424 |
| Cow position: | chr3:52727353-52727137 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 254-444 |
| Cow position: | chr3:51243074-51242874 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 274-444 |
| Cow position: | chr3:13967326-13967507 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.