COLORPOS
Section: User Commands (1) Updated: September 2000 Index
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NAME
colorpos - color specifed positions.
SYNOPSIS
- colorpos
-
[-rrange
| -range=range]
[-sseqrange
| -seq=seqrange]
[-c | --color | -Ccolor_r,color_g,color_b
| --color=color_r,color_g,color_b]
[-f | --fgcolor | -Fcolor_r,color_g,color_b
| --fgcolor=color_r,color_g,color_b]
[file]
DESCRIPTION
colorpos
adds/modifies color columns to color specified positions. Input is
either from
file
or stdin. The output is sent to stdout.
OPTIONS
colorpos
accepts the following options. No color options are treated as
-c.
- -rrange
-
- --range=range
-
Colors the positions specified in
range.
They are specified as numbers, seperated by commas.
- -sseqrange
-
- --seq=seqrange
-
Colors the sequences specified in
seqrange.
They are specified as numbers or entry names, seperated by commas.
- -c
-
- --color
-
Color colorpos symbols background green.
- -f
-
- --fgcolor
-
Color colorpos symbols foreground green.
- -Ccolor_r,color_g,color_b
-
--color=color_r,color_g,color_b -
Specifies the rgb background color.
color_x
are numbers between 0 and 1, setting the relevant color part.
- -Fcolor_r,color_g,color_b
-
--fgcolor=color_r,color_g,color_b -
Specifies the rgb foreground color.
color_x
are numbers between 0 and 1, setting the relevant color part.
EXAMPLES
Color positions 1 to 5 and 9 blue in sequences 3 to 5:
-
colorpos -r1-5,9 -s3-5 -C0,0,1 foo.col
BUGS
Report bugs to col-bugs@bioinf.au.dk.
AUTHOR
Bjarne Knudsen (bk@daimi.au.dk)
SEE ALSO
Index
- NAME
-
- SYNOPSIS
-
- DESCRIPTION
-
- OPTIONS
-
- EXAMPLES
-
- BUGS
-
- AUTHOR
-
- SEE ALSO
-
Comments, questions, etc., email
gorodkin@rth.dk.
|
