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GREPPOSSection: User Commands (1)Updated: September 2000 Index Return to Main Contents NAMEgreppos - extract certain positions from sequences.SYNOPSIS
DESCRIPTIONgreppos extracts specified positions from sequences. They are specified in a file with the --file option or by the --range option. They are alignment positions for alignments, otherwise sequence positions. Input is either from file or stdin. The output is sent to stdout. OPTIONSgreppos accepts the following options.
EXAMPLESExtract position numbers 1-20 and 27 from file foo.col:
Extract entries specified in rangefile from foo.col:
rangefile could look like this:
Extract entries specified in rangefile from foo.col, where the specifications are sorted as in col file:
BUGSReport bugs to col-bugs@bioinf.au.dk. AUTHORBjarne Knudsen (bk@daimi.au.dk) SEE ALSO
IndexComments, questions, etc., email
gorodkin@rth.dk. |
Last updated March 26th, 2007 by Jan Gorodkin |