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SUPPORTSection: User Commands (1)Updated: September 2000 Index Return to Main Contents NAMEsupport - check support for RNA structure.SYNOPSIS
DESCRIPTIONsupport checks a structural alignment for which of the annotated pairs are supported in the sense that a fraction of at least limit is one of the six standard pairs. The default value for limit is 2/3.If support is used as a filter it reads the entire file to memory, which can be quite memory consuming. If file is present, memory consumption is minimal. The output is sent to stdout. A support column is added, which has `S' if the pairs are supported, `N' if there is an inconsistency with the structural alignment, otherwise `.'. An inconsistent column is a column in which different sequences have different pairs. OPTIONSsupport accepts the following options.
EXAMPLESFind columns with 3/4 support
This version uses more memory
BUGSReport bugs to col-bugs@bioinf.au.dk.AUTHORBjarne Knudsen (bk@daimi.au.dk)SEE ALSO
IndexComments, questions, etc., email
gorodkin@rth.dk. |
Last updated March 26th, 2007 by Jan Gorodkin |