Genomic screen for structured RNAs in Drosophila melanogaster and related insects

Supplemental Data of

Identification and characterization of novel conserved RNA structures in Drosophila

Kirsch R, Seemann SE, Ruzzo WL, Cohen SM, Stadler PF, Gorodkin J* BMC Genomics. 2018 Dec 11;19(1):899
[ PubMed | Paper | Dataresource ]  List of all individual CRSs
DM-stk.tar.gz  Alignments for all CRS motifs in Stockholm format  List of all merged CRS regions  Expression of CRS regions in tiling array experiments [Graveley et al., Nature, 2011]  Original file with tiling array data [Graveley et al., Nature, 2011] downloaded from modMine (data there not available anymore)
tiling_v32_dm6.bed.gz  Bed file used in the CMfinder screen, with all tiling array transcript regions, one entry per transcript region and modENCODE experiment, i.e. entries for stage, strain and compartment are merged