CRS M2543969
+ Summary
+ Consensus structure
100 species tree
Structure as dot-bracket notation:
((((((((..................(((((.((((.....................................)))))))))...(((.....)))......................................)))....)))))
Structure as
forna illustration (bases are named as consensus sequence and colored by relative entropy):
17 species tree
Structure with human sequence and color coding of conservation: [PNG]
+ Alignment
+ Overlap with RNAcentral
CRS M2543969 is not included in RNAcentral.
+ Annotation
Strand | Genomic context | Gene identifier | Distance (0 if overlap) |
Forward | Intergenic | exon|ENSG00000102010|BMX | -4613 |
Reverse | UTR3 | UTR3|ENSG00000130234|ACE2 | 0 |
Biotype | Rfam | PhyloCSF |
UTR3 | NULL | NULL |
Repeat Masker | Tandem Repeats |
L2d:LINE/L2 | NULL |
CpG island | Exon-Intron Junction |
NULL | 1 |
Common SNP (dbSNP 147) | Flagged SNP (dbSNP 147) |
NULL | NULL |
Disease association from GWAS |
NULL |
+ Evolutionary selection
+ Covarying base pairs
100 species tree
Consensus structure with covarying base pairs (estimated by R-scape with E-value<0.05) depicted in green (R2R drawing): [PDF]
Number base pairs (bps) | Expected covarying bps | Observed covarying bps | 20 | 1.3 +/- 1.1 | 0 |
+ Chromatin signatures
DNase hypersensitive sites (95 cell types from ENCODE) | score | cell types |
| NULL | NULL |
+ Protein binding sites
+ Expression
Poly-A selected RNA (Human Body Map 2.0) | Total RNA (Human ENCODE phase 3) |
Tissue | Expression level (CPM/RLE) | Tissue | Expression level (CPM/RLE) |
Adipose | 4.7645 | Skin of body | 0 |
Colon | 4.53301 | Stomach | 0 |
Heart | 12.5042 | Heart | 7.39996 |
Liver | 1.27618 | Liver | 1.66484 |
Lung | 0.540469 | Lung | 0.826327 |
Ovary | 0.740681 | Uterus | 7.76252 |
Prostate | 1.59726 | Urinary bladder | 0 |
Muscle | 0 | Skeletal muscle | 0 |
Thyroid | 2.68086 | Thyroid gland | 0 |
Brain | 0 | Frontal cortex | 0 |
Lymph | 0.110437 | Temporal lobe | 1.18028 |
Testes | 38.8827 | Cerebellum | 2.20866 |
Blood | 0 | Spinal cord | 0 |
Kidney | 11.3404 | Diencephalon | 0.469604 |
Breast | 0 | Parietal lobe | 0.134958 |
Adrenalin | 1.01863 | Occipital | 0.286988 |
| | Metanephros | 0.157199 |
| | Tongue | 0 |
| | Camera type eye | 0.260336 |
+ Transcript boundaries and stability