CRS M2544008
+ Summary
+ Consensus structure
100 species tree
Structure as dot-bracket notation:
.............................((.(((.(((.......)))......)))...))....................................................................(((((...........))))).(((((((...................................((((..(((.....................................................)))))))...........)))))))....................
Structure as
forna illustration (bases are named as consensus sequence and colored by relative entropy):
17 species tree
Structure with human sequence and color coding of conservation: [PNG]
+ Alignment
+ Overlap with RNAcentral
CRS M2544008 is not included in RNAcentral.
+ Annotation
Strand | Genomic context | Gene identifier | Distance (0 if overlap) |
Forward | Intergenic | antisense|ENSG00000225833|GS1-594A7.3 | 7868 |
Reverse | CDS | CDS|ENSG00000130234|ACE2 | 0 |
Biotype | Rfam | PhyloCSF |
CDS | NULL | NULL |
Repeat Masker | Tandem Repeats |
NULL | NULL |
CpG island | Exon-Intron Junction |
NULL | 1 |
Common SNP (dbSNP 147) | Flagged SNP (dbSNP 147) |
NULL | NULL |
Disease association from GWAS |
NULL |
+ Evolutionary selection
+ Covarying base pairs
100 species tree
Consensus structure with covarying base pairs (estimated by R-scape with E-value<0.05) depicted in green (R2R drawing): [PDF]
Number base pairs (bps) | Expected covarying bps | Observed covarying bps | 27 | 3.2 +/- 1.6 | 0 |
+ Chromatin signatures
DNase hypersensitive sites (95 cell types from ENCODE) | score | cell types |
| NULL | NULL |
+ Protein binding sites
+ Expression
Poly-A selected RNA (Human Body Map 2.0) | Total RNA (Human ENCODE phase 3) |
Tissue | Expression level (CPM/RLE) | Tissue | Expression level (CPM/RLE) |
Adipose | 7.97324 | Skin of body | 0 |
Colon | 6.22666 | Stomach | 0 |
Heart | 15.1294 | Heart | 1.0592 |
Liver | 0.785343 | Liver | 0.338545 |
Lung | 0 | Lung | 0 |
Ovary | 0 | Uterus | 0.177429 |
Prostate | 0.749735 | Urinary bladder | 0.146586 |
Muscle | 0 | Skeletal muscle | 0 |
Thyroid | 3.29363 | Thyroid gland | 0 |
Brain | 0.412773 | Frontal cortex | 0 |
Lymph | 0.14725 | Temporal lobe | 0.0850524 |
Testes | 0 | Cerebellum | 0 |
Blood | 0 | Spinal cord | 0 |
Kidney | 0 | Diencephalon | 0 |
Breast | 0 | Parietal lobe | 0 |
Adrenalin | 0 | Occipital | 0 |
| | Metanephros | 0 |
| | Tongue | 0 |
| | Camera type eye | 0.0793836 |
+ Transcript boundaries and stability