CRS M2543969

100 species tree

Structure as dot-bracket notation:

((((((((..................(((((.((((.....................................)))))))))...(((.....)))......................................)))....)))))

Structure as forna illustration (bases are named as consensus sequence and colored by relative entropy):

17 species tree

Structure with human sequence and color coding of conservation: [PNG]

100 species tree

[PNG]  [STOCKHOLM 1.0]

17 species tree

[PNG]  [STOCKHOLM 1.0]

[View 17 species tree alignment]

Strand	Genomic context	Gene identifier	Distance (0 if overlap)
Forward	Intergenic	exon|ENSG00000102010|BMX	-4613
Reverse	UTR3	UTR3|ENSG00000130234|ACE2	0

Biotype	Rfam	PhyloCSF
UTR3	NULL	NULL

Repeat Masker	Tandem Repeats
L2d:LINE/L2	NULL

CpG island	Exon-Intron Junction
NULL	1

Common SNP (dbSNP 147)	Flagged SNP (dbSNP 147)
NULL	NULL

Disease association from GWAS
NULL

Selection ratio (SR) (FDR(SR))	PhastCons score	Minor Allele Frequency (p-value)
NA	0.0162	NA

100 species tree

Consensus structure with covarying base pairs (estimated by R-scape with E-value<0.05) highlighted in green (R2R drawing): [PDF]

Number base pairs (bps)	Expected covarying bps	Observed covarying bps
20	1.3 +/- 1.1	0

DNase hypersensitive sites (95 cell types from ENCODE)	score	cell types
	NULL	NULL

Genome Segmentations from ENCODE	GM12878	H1hESC	HeLaS3	HepG2	HUVEC	K562
	R	R	R	R	R	R

Transcription factor (ChIP)
NULL

RNA binding protein (CLIP)	P-value
NULL

Poly-A selected RNA (Human Body Map 2.0)		Total RNA (Human ENCODE phase 3)
Tissue	Expression level (CPM/RLE)	Tissue	Expression level (CPM/RLE)
Adipose	4.7645	Skin of body	0
Colon	4.53301	Stomach	0
Heart	12.5042	Heart	7.39996
Liver	1.27618	Liver	1.66484
Lung	0.540469	Lung	0.826327
Ovary	0.740681	Uterus	7.76252
Prostate	1.59726	Urinary bladder	0
Muscle	0	Skeletal muscle	0
Thyroid	2.68086	Thyroid gland	0
Brain	0	Frontal cortex	0
Lymph	0.110437	Temporal lobe	1.18028
Testes	38.8827	Cerebellum	2.20866
Blood	0	Spinal cord	0
Kidney	11.3404	Diencephalon	0.469604
Breast	0	Parietal lobe	0.134958
Adrenalin	1.01863	Occipital	0.286988
		Metanephros	0.157199
		Tongue	0
		Camera type eye	0.260336

Targeted CRS expression in human fetal brain (CaptureSeq)
Read island identifier	Hybridization temperature	Strand	P-value	Max. Read Count
NULL	NULL	NULL	NULL	NULL

Closest upstream 5' site (CAGE signal)
Distance	Strand	Maximal expression	Aggregated sum of expression	Cell type-specific score
10585	-	8.9929	9.4907	0.9777

Closest downstream poly-A site (3'-end sequencing)
Distance	Strand	Number of libraries
85	-	5

Transcript stability (CAGE signal)
Distance	Strand	Expression in control cells	Expression after exosom depletion	Exosome sensitivity
92634	-	1.4375	3.0818	0.5336