Publications

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2017


RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets
Alkan F, Wenzel A, Palasca O, Kerpedjiev P, Rudebeck AF, Stadler PF, Hofacker IL, Gorodkin J Nucleic Acids Res. 2017, in press. pii: gkw1325.
[ PubMed | Paper | Software ]

RAIN: RNA-protein Association and Interaction Networks
Junge A, Refsgaard JC, Garde C, Pan X, Santos A, Alkan F, Anthon C, von Mering C, Workman CT, Jensen LJ, Gorodkin J Database. 2017. pii: baw167, 2017
[ PubMed | Paper | Webserver ]

2016


Quality Assessment of Domesticated Animal Genome Assemblies
Seemann SE, Anthon C, Palasca O, Gorodkin J Bioinform Biol Insights. 9(Suppl 4):49-58, 2016
[ Paper ]

Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment
Sundfeld D, Havgaard JH, de Melo AC, Gorodkin J Bioinformatics. 32:1238-40, 2016
[ PubMed | Paper | Webserver | Software ]

SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization
Damas ND, Marcatti M, Come C, Christensen LL, Nielsen MM, Baumgartner R, Gylling HM, Maglieri G, Rundsten CF, Seemann SE, Rapin N, Thezenas S, Vang S, Orntoft T, Andersen CL, Pedersen JS, Lund AH Nat Commun. 7:13875, 2016
[ PubMed | Paper ]

Joint Profiling of miRNAs and mRNAs Reveals miRNA Mediated Gene Regulation in the Gottingen Minipig Obesity Model
Mentzel CM, Alkan F, Keinicke H, Jacobsen MJ, Gorodkin J, Fredholm M, Cirera S PLoS One. 11:e0167285, 2016
[ PubMed | Paper ]

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
Holzer M, Krahling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M Sci Rep. 6:34589, 2016
[ PubMed | Paper ]

A Systematic Comparison of Purification and Normalization Protocols for Quantitative MicroRNA Expressional Profiling in Insulin-Producing Cells
Vestergaard A, Blankestijn M, Stahl J, Pallesen E, Bang-Berthelsen C, Pociot F, Novotny G, Lundh M, Mandrup-Poulsen T IJMS 2016, 17:896
[ Paper ]

GLP-1 induces barrier protective expression in Brunner’s glands and regulates colonic inflammation
Bang-Berthelsen CH, Holm TL Pyke C, Simonsen L, Sokilde R, Pociot F, Heller S, Folkersen L, Kvist PH, Jakerott M, Fleckner J, Villen M, Knudsen LB, Heding A, Frederiksen KS Inflammatory Bowel Diseases, Accepted
[ Paper ]

microRNAs as regulators of beta-cell function and dysfunction
Osmai M, Osmai Y, Bang-Berthelsen CH, Pallesen EM, Vestergaard AL, Novotny GW, Pociot F, Mandrup-Poulsen T Diabetes Metab Res Rev. 32:334-49, 2016
[ PubMed | Paper ]

2015


Optimizing RNA structures by sequence extensions using RNAcop
Hecker N, Christensen-Dalsgaard M, Seemann SE, Havgaard JH, Stadler PF, Hofacker IL, Nielsen H, Gorodkin J Nucleic Acids Res. 43:8135-45, 2015
[ PubMed | Paper | Webserver | Software ]

Differential and coherent processing patterns from small RNAs
Pundhir S, Gorodkin J Sci Rep. 5:12062, 2015
[ PubMed | Paper | Software ]

Transcriptomic landscape of lncRNAs in inflammatory bowel disease
Mirza AH, Berthelsen CHB, Seemann SE, Pan X, Frederiksen KS, Vilien M, Gorodkin J, Pociot F Genome Med. 7:39, 2015
[ PubMed | Paper ]

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure
Theis C, Zirbel CL, Zu Siederdissen CH, Anthon C, Hofacker IL, Nielsen H, Gorodkin J PLoS One. 10:e0139900, 2015
[ PubMed | Paper ]

Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain
Sukosd Z, Andersen ES, Seemann SE, Jensen MK, Hansen M, Gorodkin J, Kjems J Nucleic Acids Res. 43:10168-79, 2015
[ PubMed | Paper ]

Gender and Obesity Specific MicroRNA Expression in Adipose Tissue from Lean and Obese Pigs
Mentzel CM, Anthon C, Jacobsen MJ, Karlskov-Mortensen P, Bruun CS, Jorgensen CB, Gorodkin J, Cirera S, Fredholm M PLoS One. 10:e0131650, 2015
[ PubMed | Paper ]

Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers
Stewart JB, Alaei-Mahabadi B, Sabarinathan R, Samuelsson T, Gorodkin J, Gustafsson CM, Larsson E PLoS Genet. 11:e1005333, 2015
[ PubMed | Paper ]

Emerging applications of read profiles towards the functional annotation of the genome
Pundhir S, Poirazi P, Gorodkin J Front Genet. 6:188, 2015
[ PubMed | Paper ]

Profiling of Ribose Methylations in RNA by High-Throughput Sequencing
Birkedal U, Christensen-Dalsgaard M, Krogh N, Sabarinathan R, Gorodkin J, Nielsen H Angew Chem Int Ed Engl. 54:451-5, 2015
[ PubMed | Paper ]

Popular Science


Emerging tools for RNA structure analysis in polymorphic data
Sabarinathan R, Seemann SE, Gorodkin J Biozoom 2:3, 2015
[ Paper ]

2014


Structured RNAs and synteny regions in the pig genome
Anthon C, Tafer H, Havgaard JH, Thomsen B, Hedegaard J, Seemann SE, Pundhir S, Kehr S, Bartschat S, Nielsen M, Nielsen RO, Fredholm M, Stadler PF, Gorodkin J BMC Genomics. 15:459, 2014
[ PubMed | Paper ]

Transcriptome-Wide Analysis of UTRs in Non-Small Cell Lung Cancer Reveals Cancer-Related Genes with SNV- Induced Changes on RNA Secondary Structure and miRNA Target Sites
Sabarinathan R, Wenzel A, Novotny P, Tang X, Kalari KR, Gorodkin J PLoS One. 9:e82699, 2014
[ PubMed | Paper ]

Protein-driven inference of miRNA-disease as­so­ci­a­ti­ons
Mørk S, Pletscher-Frankild S, Caro AP, Gorodkin J, Jensen LJ Bioinformatics. 30:392-7, 2014
[ PubMed | Paper | Software | Dataresource ]

Wet-lab tested microRNA assays for qPCR studies with SYBR(R) Green and DNA primers in pig tissues
Mentzel CM, Skovgaard K, Cordoba S, Herrera Uribe J, Busk PK, Cirera S Microrna. 3:174-88, 2014
[ PubMed | Paper | Sup ]

Circulating MicroRNAs in Plasma of Hepatitis B e Antigen Positive Children Reveal Liver-Specific Target Genes
Winther TN, Jacobsen KS, Mirza AH, Heiberg IL, Bang-Berthelsen CH, Pociot F, Hogh B Int J Hepatol, Article ID 791045, 10 pages, 2014
[ Paper ]

miRNA profiles in cerebrospinal fluid from patients with central hypersomnias
Holm A, Bang-Berthelsen CH, Knudsen S, Modvig S, Kornum BR, Gammeltoft S, Jennum PJ J Neurol Sci. 347(1-2):199-204, 2014
[ PubMed | Paper ]

Genetic versus Non-Genetic Regulation of miR-103, miR-143 and miR-483-3p Expression in Adipose Tissue and Their Metabolic Implications-A Twin Study
Bork-Jensen J, Thuesen AC, Bang-Bertelsen CH, Grunnet LG, Pociot F, Beck-Nielsen H, Ozanne SE, Poulsen P, Vaag A Genes. 5:508-17, 2014
[ PubMed | Paper ]

Spatially conserved regulatory elements identified within human and mouse Cd247 gene using high-throughput sequencing data from the ENCODE project
Pundhir S, Hannibal TD, Bang-Berthelsen CH, Wegener AM, Pociot F, Holmberg D, Gorodkin J Gene. 545:80-7, 2014
[ PubMed | Paper ]

miRNA profiles in plasma from patients with sleep disorders reveal dysregulation of miRNAs in narcolepsy and other central hypersomnias
Holm A, Bang-Berthelsen CH, Knudsen S, Kornum BR, Modvig S, Jennum P, Gammeltoft S SLEEP, E-pub
[ Paper ]

Temporal profiling of cytokine-induced genes in pancreatic beta-cells by meta-analysis and network inference
Lopes M, Kutlu B, Miani M, Bang-Berthelsen CH, Storling J, Pociot F, Goodman N, Hood L, Welsh N, Bontempi G, Eizirik DL Genomics. 103:264-75, 2014
[ PubMed | Paper ]

Books, Book Chapters


Computational Approaches for Predicting Mutation Effects on RNA Structure
Sabarinathan R, Gorodkin J In Comprehensive Biomedical Physics. Anders Brahme, Vol 6. 111, Amsterdam: Elsevier, 2014
[ Chapter ]

RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods
Gorodkin J, Ruzzo WL (Ed.) Methods Mol Biol. 1097, Humana Press, 2014
[ Book ]

Concepts and introduction to RNA bioinformatics
Gorodkin J, Hofacker IL, Ruzzo WL In RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods. Gorodkin J, Ruzzo WL (Ed.), Methods Mol Biol. 1097:1-31, 2014
[ PubMed | Chapter ]

RNA structural alignments, part I: Sankoff-based approaches for structural alignments
Havgaard JH, Gorodkin J In RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods. Gorodkin J, Ruzzo WL (Ed.), Methods Mol Biol. 1097:275-90, 2014
[ PubMed | Chapter ]

De novo discovery of structured ncRNA motifs in genomic sequences
Ruzzo WL, Gorodkin J In RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods. Gorodkin J, Ruzzo WL (Ed.), Methods Mol Biol. 1097:303-18, 2014
[ PubMed | Chapter ]

2013


Automated identification of RNA 3D modules with discriminative power in RNA structural alignments
Theis C, Honer Zu Siederdissen C, Hofacker IL, Gorodkin J Nucleic Acids Res. 41:9999-10009, 2013
[ PubMed | Paper | Software ]

MicroRNA discovery by similarity search to a database of RNA-seq profiles
Pundhir S, Gorodkin J Front Genet. 4:133, 2013
[ PubMed | Paper | Webserver ]

LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search
Will S, Siebauer MF, Heyne S, Engelhardt J, Stadler PF, Reiche K, Backofen R Algorithms Mol Biol. 8:14, 2013
[ PubMed | Paper ]

Widespread purifying selection on RNA structure in mammals
Smith MA, Gesell T, Stadler PF, Mattick JS Nucleic Acids Res. 41:8220-36, 2013
[ PubMed | Paper ]

2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction
Lorenz R, Bernhart SH, Qin J, Siederdissen CH, Tanzer A, Amman F, Hofacker IL, Stadler PF IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):832-44.
[ PubMed | Paper ]

CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems
Lange SJ, Alkhnbashi OS, Rose D, Will S, Backofen R Nucleic Acids Res. 41:8034-44, 2013
[ PubMed | Paper ]

MicroRNAs in the Hypothalamus
Meister B, Herzer S, Silahtaroglu A Neuroendocrinology. 98:243-53, 2013
[ PubMed | Paper ]

Hepatitis B Surface Antigen Quantity Positively Correlates with Plasma Levels of microRNAs Differentially Expressed in Immunological Phases of Chronic Hepatitis B in Children
Winther TN, Heiberg IL, Bang-Berthelsen CH, Pociot F, Hogh B PLoS One. 8:e80384, 2013
[ PubMed | Paper ]

Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing
Alquezar-Planas DE, Mourier T, Bruhn CA, Hansen AJ, Vitcetz SN, Mørk S, Gorodkin J, Nielsen HA, Guo Y, Sethuraman A, Paxinos EE, Shan T, Delwart EL, Nielsen LP Sci Rep. 3:2468, 2013
[ PubMed | Paper ]

The RNAsnp web server: predicting SNP effects on local RNA secondary structure
Sabarinathan R, Tafer H, Seemann SE, Hofacker IL, Stadler PF, Gorodkin J Nucleic Acids Res. 41:W475-9, 2013
[ PubMed | Paper | Webserver | Software ]

Differential plasma microRNA profiles in HBeAg positive and HBeAg negative children with chronic hepatitis B
Winther TN, Bang-Berthelsen CH, Heiberg IL, Pociot F, Hogh B PLoS One. 8:e58236, 2013
[ PubMed | Paper ]

RNAsnp: efficient detection of local RNA secondary structure changes induced by SNPs
Sabarinathan R, Tafer H, Seemann SE, Hofacker IL, Stadler PF, Gorodkin J Hum Mutat. 34:546-56, 2013
[ PubMed | Paper | Software ]

2012


Haploinsufficiency of CELF4 at 18q12.2 is associated with developmental and behavioral disorders, seizures, eye manifestations, and obesity
Halgren C, Bache I, Bak M, Myatt MW, Anderson CM, Brøndum-Nielsen K, Tommerup N Eur J Hum Genet. 20:1315-9, 2012
[ PubMed | Paper ]

Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae
Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M BMC Genomics. 13:459, 2012
[ PubMed | Paper ]

Circulating Levels of MicroRNA from Children with Newly Diagnosed Type 1 Diabetes and Healthy Controls: Evidence That miR-25 Associates to Residual Beta-Cell Function and Glycaemic Control during Disease Progression
Nielsen LB, Wang C, Sørensen K, Bang-Berthelsen C, Hansen L, Andersen MM, Hougaard P, Juul A, Zang C, Pociot F, Mortensen HB Experimental Diabetes Research, 2012:896362, 2012
[ Paper ]

Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain
Seemann SE, Sunkin SM, Hawrylycz MJ, Ruzzo WL, Gorodkin J BMC Genomics. 13:214, 2012
[ PubMed | Paper ]

Sequence and expression analysis of gaps in human chromosome 20
Minocherhomji S, Seemann S, Mang Y, El-Schich Z, Bak M, Hansen C, Papadopoulos N, Josefsen K, Nielsen H, Gorodkin J, Tommerup N, Silahtaroglu A Nucleic Acids Res. 40:6660-72, 2012
[ PubMed | Paper ]

RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction
Washietl S, Hofacker IL, Stadler PF, Kellis M Nucleic Acids Res. 40:4261-72, 2012
[ PubMed | Paper ]

Corpus callosum abnormalities, intellectual disability, speech impairment, and autism in patients with haploinsufficiency of ARID1B
Halgren C, Kjaergaard S, Bak M, Hansen C, El-Schich Z, Anderson CM, Henriksen KF, Hjalgrim H, Kirchhoff M, Bijlsma EK, Nielsen M, den Hollander NS, Ruivenkamp CA, Isidor B, Le Caignec C, Zannolli R, Mucciolo M, Renieri A, Mari F, Anderlid BM, Andrieux J, Dieux A, Tommerup N, Bache I Clin Genet. 82:248-55, 2012
[ PubMed | Paper ]

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns
Langenberger D, Pundhir S, Ekstrom CT, Stadler PF, Hoffmann S, Gorodkin J Bioinformatics. 28:17-24, 2012
[ PubMed | Paper | Software ]

Experimental identification and analysis of macronuclear non-coding RNAs from the ciliate Tetrahymena thermophila
Andersen KL, Nielsen H Nucleic Acids Res. 40:1267-81, 2012
[ PubMed | Paper ]

Analyses of pig genomes provide insight into porcine demography and evolution
Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, Badaoui B, Beattie CW, Bendixen C, Berman D, Blecha F, Blomberg J, Bolund L, Bosse M, Botti S, Bujie Z, Bystrom M, Capitanu B, Carvalho-Silva D, Chardon P, Chen C, Cheng R, Choi SH, Chow W, Clark RC, Clee C, Crooijmans RP, Dawson HD, Dehais P, De Sapio F, Dibbits B, Drou N, Du ZQ, Eversole K, Fadista J, Fairley S, Faraut T, Faulkner GJ, Fowler KE, Fredholm M, Fritz E, Gilbert JG, Giuffra E, Gorodkin J, Griffin DK, Harrow JL, Hayward A, Howe K, Hu ZL, Humphray SJ, Hunt T, Hornshoj H, Jeon JT, Jern P, Jones M, Jurka J, Kanamori H, Kapetanovic R, Kim J, Kim JH, Kim KW, Kim TH, Larson G, Lee K, Lee KT, Leggett R, Lewin HA, Li Y, Liu W, Loveland JE, Lu Y, Lunney JK, Ma J, Madsen O, Mann K, Matthews L, McLaren S, Morozumi T, Murtaugh MP, Narayan J, Nguyen DT, Ni P, Oh SJ, Onteru S, Panitz F, Park EW, Park HS, Pascal G, Paudel Y, Perez-Enciso M, Ramirez-Gonzalez R, Reecy JM, Rodriguez-Zas S, Rohrer GA, Rund L, Sang Y, Schachtschneider K, Schraiber JG, Schwartz J, Scobie L, Scott C, Searle S, Servin B, Southey BR, Sperber G, Stadler P, Sweedler JV, Tafer H, Thomsen B, Wali R, Wang J, Wang J, White S, Xu X, Yerle M, Zhang G, Zhang J, Zhang J, Zhao S, Rogers J, Churcher C, Schook LB Nature. 491:393-8, 2012
[ PubMed | Paper | Dataresource ]

RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model
Wenzel A, Akbasli E, Gorodkin J Bioinformatics. 28:2738-46, 2012
[ PubMed | Paper | Software ]

Comparative ncRNA gene and structure prediction using Foldalign and FoldalignM
Havgaard J, Kaur S, Gorodkin J Curr Protoc Bioinformatics. 2012 Sep;Chapter 12:Unit12.11.
[ PubMed | Chapter ]

Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs
Croft L, Szklarczyk D, Jensen LJ, Gorodkin J BMC Syst Biol. 6:90, 2012
[ PubMed | Paper | Dataresource ]

RILogo: visualizing RNA-RNA interactions
Menzel P, Seemann SE, Gorodkin J Bioinformatics. 28:2523-6, 2012
[ PubMed | Paper | Webserver | Software ]

2011


PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences
Seemann SE, Richter AS, Gesell T, Backofen R, Gorodkin J Bioinformatics. 27:211-9, 2011
[ PubMed | Paper | Webserver | Software ]

From structure prediction to genomic screens for novel non-coding RNAs
Gorodkin J, Hofacker IL PLoS Comput Biol. 7:e1002100, 2011
[ PubMed | Paper ]

The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences
Seemann SE, Menzel P, Backofen R, Gorodkin J Nucleic Acids Res. 39:W107-11, 2011
[ PubMed | Paper | Webserver ]

Proteinortho: detection of (co-)orthologs in large-scale analysis
Lechner M, Findeiss S, Steiner L, Marz M, Stadler PF, Prohaska SJ BMC Bioinformatics. 12:124, 2011
[ PubMed | Paper ]

Fast local fragment chaining using sum-of-pair gap costs
Otto C, Hoffmann S, Gorodkin J, Stadler PF Algorithms Mol Biol. 6:4, 2011
[ PubMed | Paper | Software ]

In silico evolution of early metabolism
Ullrich A, Rohrschneider M, Scheuermann G, Stadler PF, Flamm C Artif Life. 17:87-108, 2011
[ PubMed | Paper ]

Traces of post-transcriptional RNA modifications in deep sequencing data
Findeiss S, Langenberger D, Stadler PF, Hoffmann S Biol Chem. 392:305-13, 2011
[ PubMed | Paper ]

Topology and prediction of RNA pseudoknots
Reidys CM, Huang FW, Andersen JE, Penner RC, Stadler PF, Nebel ME Bioinformatics. 27:1076-85, 2011
[ PubMed | Paper ]

Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes
Bang-Berthelsen CH, Pedersen L, Floyel T, Hagedorn PH, Gylvin T, Pociot F BMC Genomics. 12:97, 2011
[ PubMed | Paper ]

Global microRNA analysis of the NCI-60 cancer cell panel
Sokilde R, Kaczkowski B, Podolska A, Cirera S, Gorodkin J, Moller S, Litman T Mol Cancer Ther. 10:375-84, 2011
[ PubMed | Paper ]

maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences
Menzel P, Stadler PF, Gorodkin J Bioinformatics. 27:317-25, 2011
[ PubMed | Paper | Webserver | Software ]

PLEXY: efficient target prediction for box C/D snoRNAs
Kehr S, Bartschat S, Stadler PF, Tafer H Bioinformatics. 27:279-80, 2011
[ PubMed | Paper ]

A folding algorithm for extended RNA secondary structures
Honer zu Siederdissen C, Bernhart SH, Stadler PF, Hofacker IL Bioinformatics. 27:i129-36, 2011
[ PubMed | Paper ]

Books, Book Chapters


Genome browsers
Torarinsson E In RNA. Nielsen H, Methods Mol Biol. 703:53-65, 2011
[ PubMed | Paper ]

2010


High glucose suppresses human islet insulin biosynthesis by inducing miR-133a leading to decreased polypyrimidine tract binding protein-expression
Fred RG, Bang-Berthelsen CH, Mandrup-Poulsen T, Grunnet LG, Welsh N PLoS One. 5:e10843, 2010
[ PubMed | Paper ]

Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions
Seemann SE, Richter AS, Gorodkin J, Backofen R Algorithms Mol Biol. 5:22, 2010
[ PubMed | Paper ]

A study of alternative splicing in the pig
Nygard AB, Cirera S, Gilchrist MJ, Gorodkin J, Jørgensen CB, Fredholm M BMC Res Notes. 3:123, 2010
[ PubMed | Paper | Dataresource ]

De novo prediction of structured RNAs from genomic sequences
Gorodkin J, Hofacker IL, Torarinsson E, Yao Z, Havgaard JH, Ruzzo WL Trends Biotechnol. 28:9-19, 2010
[ PubMed | Paper | Dataresource | Sup ]

Books, Book Chapters


Evolutionary Genomics of MicroRNAs and Their Relatives
Tanzer A, Riester M, Hertel J, Bermudez-Santana CI, Gorodkin J, Hofacker IL, Stadler PF In Evolutionary Genomics and Systems Biology. Gustavo Caetano-Anolles (Ed.), Wiley-Blackwell, Hoboken NJ, 2010, pp. 295-327.
[ Paper | Abstract ]