| ID | Species Name | Group | Subgroup | Accessions |
|---|---|---|---|---|
| Tetr.ther._X56981 | Tetrahymena thermophila | Protozoa | Alveolata | X56981 |
| Tetr.rost._SDB-5909 | Tetrahymena rostrata | Protozoa | Alveolata | |
| Plas.falc._AE014819 | Plasmodium falciparum 3D7 | Protozoa | Alveolata | AE014819 |
| Plas.falc._AU088164 | Plasmodium falciparum 3D7 | Protozoa | Alveolata | AU088164 |
| Plas.falc._EF690554 | Plasmodium falciparum | Protozoa | Alveolata | EF690554 |
| Plas.yoel._GSP-352914 | Plasmodium yoelii | Protozoa | Alveolata | |
| Plas.berg._GSP-5823 | Plasmodium berghei | Protozoa | Alveolata | |
| Plas.berg._DC223490 | Plasmodium berghei strain ANKA | Protozoa | Alveolata | DC223490 |
| Plas.berg._DC223613 | Plasmodium berghei strain ANKA | Protozoa | Alveolata | DC223613 |
| Plas.chab._GSP-31271 | Plasmodium chabaudi | Protozoa | Alveolata | |
| Plas.know._GSP-5851 | Plasmodium knowlesi | Protozoa | Alveolata | |
| Plas.viva._GSP-31273 | Plasmodium vivax | Protozoa | Alveolata | |
| Plas.reic._GSP-5854 | Plasmodium reichenowi | Protozoa | Alveolata | |
| Plas.gall._GSP-5849 | Plasmodium gallinaceum | Protozoa | Alveolata | |
| Thei.annu._NW_001091934 | Theileria annulata strain Ankara | Protozoa | Alveolata | NW_001091934 |
| Thei.parv._GSP-333668 | Theileria parva | Protozoa | Alveolata | |
| Eime.tene._GSP-413949 | Eimeria tenella | Protozoa | Alveolata | |
| Eime.tene._CD666347 | Eimeria tenella | Protozoa | Alveolata | CD666347 |
| Babe.bige._GSP-5866 | Babesia bigemina | Protozoa | Alveolata | |
| Toxo.gond._GSP-398031 | Toxoplasma gondii type III | Protozoa | Alveolata | |
| Toxo.gond._CO743022 | Toxoplasma gondii | Protozoa | Alveolata | CO743022 |
| Cryp.parv._XM_626716 | Cryptosporidium parvum Iowa II | Protozoa | Alveolata | XM_626716 |
| Cryp.parv._AA532232 | Cryptosporidium parvum | Protozoa | Alveolata | AA532232 |
| Cryp.homi._GSP-353151 | Cryptosporidium hominis | Protozoa | Alveolata | |
| Perk.mari._GSP-31276 | Perkinsus marinus | Protozoa | Alveolata | |
| Oxyt.trif._GSP-99928 | Oxytricha trifallax | Protozoa | Alveolata | |
| Dict.disc._AJ699381 | Dictyostelium discoideum | Protozoa | Amoebozoa | AJ699381 |
| Dict.disc._BJ360333 | Dictyostelium discoideum | Protozoa | Amoebozoa | BJ360333 |
| Dict.disc._BJ387276 | Dictyostelium discoideum | Protozoa | Amoebozoa | BJ387276 |
| Giar.lamb._GSP-184922 | Giardia lamblia | Protozoa | Diplomonadida | |
| Enta.hist._BK005670 | Entamoeba histolytica | Protozoa | Entamoebidae | BK005670 |
| Enta.hist._AF487684 | Entamoeba histolytica | Protozoa | Entamoebidae | AF487684 |
| Enta.terr._GSP-110771 | Entamoeba terrapinae | Protozoa | Entamoebidae | |
| Enta.disp._GSP-370354 | Entamoeba dispar | Protozoa | Entamoebidae | |
| Enta.inva._GSP-370355 | Entamoeba invadens | Protozoa | Entamoebidae | |
| Enta.mosh._GSP-41668 | Entamoeba moshkovskii | Protozoa | Entamoebidae | |
| Leis.majo._SDB-347515 | Leishmania major | Protozoa | Euglenozoa | |
| Leis.majo._AY722713 | Leishmania major Lma1 (partial) | Protozoa | Euglenozoa | AY722713 |
| Leis.majo._AY722714 | Leishmania major Lma2 (partial) | Protozoa | Euglenozoa | AY722714 |
| Leis.majo._AY722715 | Leishmania major Lma3 (partial) | Protozoa | Euglenozoa | AY722715 |
| Leis.infa._SDB-5671 | Leishmania infantum | Protozoa | Euglenozoa | |
| Leis.infa._AM502223 | Leishmania infantum | Protozoa | Euglenozoa | AM502223 |
| Leis.infa._AY781792 | Leishmania infantum (partial) | Protozoa | Euglenozoa | AY781792 |
| Leis.braz._SDB-87235 | Leishmania braziliensis | Protozoa | Euglenozoa | |
| Leis.braz._AM494942 | Leishmania braziliensis | Protozoa | Euglenozoa | AM494942 |
| Leis.braz._AY781790 | Leishmania braziliensis isolate 17 (partial) | Protozoa | Euglenozoa | AY781790 |
| Leis.braz._AY781791 | Leishmania braziliensis isolate 18 (partial) | Protozoa | Euglenozoa | AY781791 |
| Leis.braz._AY722724 | Leishmania braziliensis Lbr1 (partial) | Protozoa | Euglenozoa | AY722724 |
| Leis.braz._AY722725 | Leishmania braziliensis Lbr2 (partial) | Protozoa | Euglenozoa | AY722725 |
| Leis.braz._AY722726 | Leishmania braziliensis Lbr3 (partial) | Protozoa | Euglenozoa | AY722726 |
| Leis.aeth._AY722730 | Leishmania aethiopica Lae1 (partial) | Protozoa | Euglenozoa | AY722730 |
| Leis.aeth._AY722731 | Leishmania aethiopica Lae2 (partial) | Protozoa | Euglenozoa | AY722731 |
| Leis.aeth._AY722732 | Leishmania aethiopica Lae3 (partial) | Protozoa | Euglenozoa | AY722732 |
| Leis.dono._AY781793 | Leishmania donovani chagasi isolate 15 (partial) | Protozoa | Euglenozoa | AY781793 |
| Leis.dono._AY781794 | Leishmania donovani chagasi isolate 16 (partial) | Protozoa | Euglenozoa | AY781794 |
| Leis.dono._AY781795 | Leishmania donovani isolate 14 (partial) | Protozoa | Euglenozoa | AY781795 |
| Leis.dono._AY722733 | Leishmania donovani Ldo1 (partial) | Protozoa | Euglenozoa | AY722733 |
| Leis.dono._AY722734 | Leishmania donovani Ldo2 (partial) | Protozoa | Euglenozoa | AY722734 |
| Leis.dono._AY722735 | Leishmania donovani Ldo3 (partial) | Protozoa | Euglenozoa | AY722735 |
| Leis.guya._AY722727 | Leishmania guyanensis Lgu1 (partial) | Protozoa | Euglenozoa | AY722727 |
| Leis.guya._AY722728 | Leishmania guyanensis Lgu2 (partial) | Protozoa | Euglenozoa | AY722728 |
| Leis.trop._AY781789 | Leishmania tropica isolate 13 (partial) | Protozoa | Euglenozoa | AY781789 |
| Leis.trop._AY722722 | Leishmania tropica Ltr1 (partial) | Protozoa | Euglenozoa | AY722722 |
| Leis.trop._AY722723 | Leishmania tropica Ltr2 (partial) | Protozoa | Euglenozoa | AY722723 |
| Tryp.bruc._M80262 | Trypanosoma brucei | Protozoa | Euglenozoa | M80262 |
| Tryp.bruc._S56681 | Trypanosoma brucei | Protozoa | Euglenozoa | S56681 |
| Tryp.bruc._AC159431 | Trypanosoma brucei | Protozoa | Euglenozoa | AC159431 |
| Tryp.bruc._X57047 | Trypanosoma brucei | Protozoa | Euglenozoa | X57047 |
| Tryp.bruc._AF047723 | Trypanosoma brucei rhodesiense | Protozoa | Euglenozoa | AF047723 |
| Tryp.cong._SDB-5692 | Trypanosoma congolense | Protozoa | Euglenozoa | |
| Tryp.viva._SDB-5699 | Trypanosoma vivax | Protozoa | Euglenozoa | |
| Lept.coll._AF006750 | Leptomonas collosoma | Protozoa | Euglenozoa | AF006750 |
| Ento.sulc._AF095839 | Entosiphon sulcatum | Protozoa | Euglenozoa | AF095839 |
| Crit.fasc._AY781797 | Crithidia fasciculata (partial) | Protozoa | Euglenozoa | AY781797 |
| Crit.luci._AY781798 | Crithidia luciliae (partial) | Protozoa | Euglenozoa | AY781798 |
| Naeg.grub._GSP-5762 | Naegleria gruberi | Protozoa | Heterolobosea | |
| Tric.vagi._GSP-5722-1 | Trichomonas vaginalis | Protozoa | Parabasalidea | |
| Tric.vagi._GSP-5722-2 | Trichomonas vaginalis | Protozoa | Parabasalidea | |
| Phyt.soja._GSP-67593 | Phytophthora sojae | Protozoa | Stramenopiles | |
| Phyt.ramo._GSP-164328 | Phytophthora ramorum | Protozoa | Stramenopiles | |
| Phyt.infe._CV911012 | Phytophthora infestans | Protozoa | Stramenopiles | CV911012 |
| Phyt.infe._CV919934 | Phytophthora infestans | Protozoa | Stramenopiles | CV919934 |