mirDBA: microRNA discovery by similarity search to a database of RNA-seq profiles

miRRPdb v1.0: database of miRNA read profiles (release date: June 21, 2013) - download

The current version of the database has been prepared using short-reads mapped to 4,862 distinct microRNAs from 20 organisms. The short reads were downloaded from miRBase (ftp://mirbase.org/pub/mirbase/CURRENT/database_files/, dated: Jan 2, 2013 - RELEASE 19). All the mapped reads from each of the 20 organisms were preprocessed individually to obtain read profiles corresponding to distinct miRNAs (original article).

In total the database is comprised of 2,540 miRNA read profiles from 20 organisms

Organisma# readsb# miRNAc# read profiles
alldfilterede
Ame475,288 (1)15910996
Ath472,5021(8)275303173
Bfl37,217(1)1137134
Bmo2,021,309(3)384264194
Cbr17,442(1)1158125
Cel1,048,509(6)18413093
Cqu379,978(1)686129
Cre1,082(1)281911
Crm9,988(1)956319
Cte50,659(1)118728
Dme35,664,132(50)2374845
Hsa81,138,802(79)1,279801550
Mmu913,716,590(82)749688624
Nve2,711(1)34172
Osa1,506,288(4)440540288
Ppc11,176(1)113665
Ppt503,573(3)4224285148
Rco147(25)1320
Spu6,458(1)38257
Tca4,861,929(2)196193189
Total1,046,178,2994,8623,8382,540
aAme, A. mellifera; Ath, A. thaliana; Bfl, B. floridae; Bmo, B. mori; Cbr, C. briggsae; Cel, C. elegans; Cqu, C. quinquefasciatus; Cre, C. reinhardtii; Crm, C. remanei; Cte, C. teleta; Dme, D. melanogaster; Hsa, H. sapiens; Mmu, M. musculus; Nve, N. vectensis; Osa, O. sativa; Ppc, P. pacificus; Ppt, P. patens; Rco, R. communis; Spu, S. purpuratus; Tca, T. castaneum,
bnumber of mapped reads. Total number of GEO experiments are given in brackets. Some experiments are comprised of reads from multiple organisms,
ctotal number of distinct miRNAs with mapped reads.,
dtotal number of block groups or miRNAs retrieved after preprocessing,
eblock groups with >1 block and ≤200 nt in length.