mirDBA: microRNA discovery by similarity search to a database of RNA-seq profiles

Supplementary Material




Listed below are the profile alignment results for 250 ncRNA from ENCODE dataset (query) with miRNA from miRRPdb (subject)

QuerySubjectScoreAlignment
hsa-mir-3155|chr10:6194169-6194231(+)cqu-mir-988|supercont3.791:14291-14353(+)0.83PDF
hsa-mir-199a-1|chr19:10928102-10928169(-)hsa-mir-6511a-4|chr16:18437871-18437935(-)0.71PDF
hsa-mir-3677|chr16:2320715-2320773(+)tca-mir-219|chrLG3:7583070-7583129(+)0.83PDF
hsa-mir-193b|chr16:14397836-14397896(+)bfl-mir-124|Bf_V2_32:1879934-1879995(+)0.82PDF
hsa-mir-589|chr7:5535464-5535527(-)cbr-mir-64a|chrIII:218927-218991(-)0.76PDF
hsa-mir-3177|chr16:1784995-1785060(+)osa-MIR398b|chr07:14597636-14597701(-)0.84PDF
hsa-mir-3940|chr19:6416444-6416500(-)bfl-mir-2068|Bf_V2_32:1589826-1589883(-)0.87PDF
hsa-mir-324|chr17:7126624-7126683(-)mmu-mir-190b|chr3:90070030-90070090(+)0.75PDF
hsa-mir-597|chr8:9599196-9599260(+)hsa-mir-4636|chr5:9053936-9054000(-)0.82PDF
SNORA3_RF00334|chr16:2846407-2846475(-)cel-mir-358|V:8580855-8580924(-)0.75PDF
hsa-mir-339|chr7:1062589-1062650(-)hsa-mir-4766|chr22:41209895-41209955(-)0.73PDF
hsa-mir-212|chr17:1953580-1953644(-)hsa-mir-3129|chr2:189997769-189997832(-)0.76PDF
hsa-mir-1909|chr19:1816166-1816223(-)mmu-mir-3088|chr2:28733286-28733345(+)0.77PDF
hsa-mir-181c|chr19:13985538-13985601(+)osa-MIR395v|chr09:6605582-6605641(-)0.76PDF
U6-related|chr4:3045864-3045930(+)osa-MIR5525|chr09:3903322-3903385(-)0.70PDF
hsa-mir-132|chr17:1953220-1953282(-)cel-mir-791|X:5809325-5809389(+)0.76PDF
tRNA_RF00005|chr8:11770800-11770876(+)osa-MIR5538|chr10:21265771-21265854(+)0.70PDF
U7_RF00066|chr2:10884317-10884358(+)osa-MIR5340|chr02:5683422-5683456(-)0.70PDF
hsa-mir-3143|chr6:27115347-27115429(+)ath-MIR773a|chr1:13067254-13067334(+)0.76PDF
hsa-mir-580|chr5:36148007-36148069(-)cel-mir-785|X:3004677-3004737(+)0.77PDF
U5F-related|chr12:31747077-31747140(-)cel-mir-355|II:11833495-11833556(-)0.80PDF
hsa-mir-550a-1|chr7:30329429-30329491(+)hsa-mir-1271|chr5:175794960-175795021(+)0.78PDF
hsa-mir-552|chr1:35135213-35135272(-)bmo-mir-2796|nscaf2962:167783-167841(+)0.81PDF
hsa-mir-193a|chr17:29887034-29887090(+)hsa-mir-1911|chrX:113997755-113997811(+)0.78PDF
hsa-mir-3605|chr1:33798004-33798075(-)cel-mir-1830|II:4371842-4371911(-)0.72PDF
hsa-mir-423|chr17:28444112-28444172(+)mmu-mir-3067|chr12:81166165-81166225(+)0.78PDF
hsa-mir-3934|chr6:33665926-33665989(+)mmu-mir-3108|chr8:108936867-108936931(+)0.74PDF
hsa-mir-579|chr5:32394493-32394561(-)hsa-mir-548w|chr16:26036563-26036629(+)0.73PDF
hsa-mir-550a-2|chr7:32772612-32772674(+)hsa-mir-1271|chr5:175794960-175795021(+)0.78PDF
hsa-mir-624|chr14:31483874-31483935(-)mmu-mir-3105|chr7:144009267-144009327(+)0.74PDF
hsa-mir-876|chr9:28863631-28863694(-)tca-mir-3811e|chrLG1:8499630-8499695(+)0.77PDF
hsa-mir-221|chrX:45605604-45605671(-)hsa-mir-3200|chr22:31127553-31127621(+)0.70PDF
hsa-mir-1293|chr12:50627926-50627990(-)hsa-mir-1247|chr14:102026660-102026723(-)0.75PDF
hsa-mir-502|chrX:49779218-49779281(+)hsa-mir-6511a-4|chr16:18437871-18437935(-)0.77PDF
hsa-mir-659|chr22:38243698-38243761(-)hsa-mir-519b|chr19:54198478-54198538(+)0.80PDF
hsa-mir-425|chr3:49057592-49057654(-)bmo-mir-927|nscaf2575:1011465-1011526(+)0.72PDF
hsa-mir-30e|chr1:41220041-41220107(+)tca-mir-3811c-2|chrLG1:8498728-8498793(+)0.73PDF
hsa-mir-30c-1|chr1:41222950-41223033(+)hsa-mir-518c|chr19:54211992-54212072(+)0.72PDF
28S_rRNA-related|chr8:46951922-46952002(-)ame-mir-3801|Group2.36:214336-214417(+)0.70PDF
hsa-mir-627|chr15:42491788-42491850(-)cel-mir-791|X:5809325-5809389(+)0.76PDF
hsa-mir-147b|chr15:45725258-45725319(+)bmo-mir-993b|nscaf2734:2638-2699(-)0.81PDF
hsa-mir-3617|chr20:44333788-44333829(-)cbr-mir-87|chrV:6389737-6389778(+)0.88PDF
SNORD65_RF00571|chr8:41284203-41284244(+)ath-MIR5645f|chr5:14946892-14946931(-)0.70PDF
hsa-mir-500a|chrX:49773048-49773113(+)hsa-mir-96|chr7:129414538-129414603(-)0.71PDF
hsa-mir-660|chrX:49777862-49777923(+)osa-MIR395v|chr09:6605582-6605641(-)0.77PDF
hsa-mir-188|chrX:49768121-49768183(+)hsa-mir-1271|chr5:175794960-175795021(+)0.74PDF
hsa-mir-330|chr19:46142263-46142328(-)cel-mir-791|X:5809325-5809389(+)0.77PDF
hsa-mir-3616|chr20:45795626-45795689(+)cbr-mir-46|chrIII:7878510-7878572(+)0.78PDF
hY4_RNA-related|chr13:40359594-40359633(-)cbr-mir-87|chrV:6389737-6389778(+)0.74PDF
hsa-mir-501|chrX:49774341-49774404(+)hsa-mir-34b|chr11:111383673-111383736(+)0.76PDF
hsa-mir-129-2|chr11:43602957-43603021(+)osa-MIR5525|chr09:3903322-3903385(-)0.79PDF
hsa-mir-769|chr19:46522240-46522280(+)osa-MIR1882g|chr11:20362607-20362645(+)0.76PDF
hsa-mir-642a|chr19:46178199-46178257(+)osa-MIR395v|chr09:6605582-6605641(-)0.87PDF
hsa-mir-33a|chr22:42296951-42297014(+)bmo-mir-2792|nscaf2734:1230780-1230844(+)0.77PDF
hsa-mir-1283-2|chr19:54261498-54261559(+)crm-mir-237|Crem_Contig43:596121-596181(+)0.83PDF
hsa-mir-99b|chr19:52195870-52195931(+)mmu-mir-3078|chr14:64591200-64591261(+)0.81PDF
hsa-mir-520a|chr19:54194148-54194207(+)crm-mir-237|Crem_Contig43:596121-596181(+)0.87PDF
hsa-mir-520b|chr19:54204481-54204544(+)cqu-mir-988|supercont3.791:14291-14353(+)0.83PDF
hsa-mir-527|chr19:54257284-54257345(+)mmu-mir-3105|chr7:144009267-144009327(+)0.78PDF
hsa-mir-628|chr15:55665149-55665211(-)hsa-mir-4766|chr22:41209895-41209955(-)0.74PDF
hsa-mir-519c|chr19:54189736-54189799(+)hsa-mir-3189|chr19:18497380-18497441(+)0.83PDF
hsa-mir-518c|chr19:54212011-54212072(+)hsa-mir-6511a-4|chr16:18437871-18437935(-)0.78PDF
hsa-mir-526b|chr19:54197659-54197718(+)mmu-mir-3098|chr6:125195807-125195867(+)0.85PDF
hsa-mir-518a-2|chr19:54242600-54242661(+)hsa-mir-154|chr14:101526103-101526164(+)0.80PDF
hsa-mir-518d|chr19:54238143-54238204(+)mmu-mir-3078|chr14:64591200-64591261(+)0.75PDF
hsa-mir-3614|chr17:54968598-54968702(-)ppt-MIR1070|scaffold_109:1216104-1216181(+)0.71PDF
hsa-mir-519e|chr19:54183205-54183264(+)hsa-mir-3144|chr6:120336336-120336394(+)0.75PDF
hsa-mir-643|chr19:52785070-52785132(+)hsa-mir-624|chr14:31483864-31483925(-)0.83PDF
hsa-mir-522|chr19:54254477-54254541(+)hsa-mir-512-1|chr19:54169944-54170005(+)0.79PDF
hsa-mir-1296|chr10:65132728-65132793(-)ppt-MIR1038|scaffold_8:1028806-1028870(+)0.79PDF
hsa-mir-605|chr10:53059345-53059404(+)mmu-mir-3104|chr7:141992180-141992241(+)0.86PDF
hsa-mir-518f|chr19:54203282-54203343(+)mmu-mir-3070b|chr12:109588607-109588670(+)0.77PDF
hsa-mir-1468|chrX:63005895-63005955(-)cbr-mir-246|chrIV:5799938-5799999(-)0.85PDF
hsa-mir-520e|chr19:54178978-54179041(+)hsa-mir-6511a-4|chr16:18437871-18437935(-)0.76PDF
SNORA11_RF00614|chrX:54953736-54953825(+)bmo-mir-3229|nscaf2905:203343-203434(+)0.76PDF
hsa-mir-512-1|chr19:54169945-54170006(+)hsa-mir-653|chr7:93112084-93112143(-)0.75PDF
hsa-mir-520c|chr19:54210719-54210783(+)hsa-mir-200a|chr1:1103255-1103319(+)0.73PDF
5S_rRNA-related|chr1:52439097-52439138(+)cre-MIR910|scaffold_17:966156-966199(+)0.72PDF
hsa-mir-1228|chr12:57588286-57588359(+)spu-mir-2006|gb0.81PDF
hsa-mir-517b|chr19:54224334-54224395(+)hsa-mir-624|chr14:31483864-31483925(-)0.81PDF
hsa-mir-512-2|chr19:54172429-54172490(+)hsa-mir-653|chr7:93112084-93112143(-)0.75PDF
hsa-mir-217|chr2:56210117-56210178(-)cbr-mir-51|chrIV:5734749-5734809(+)0.81PDF
hsa-mir-548u|chr6:57254941-57255001(+)hsa-mir-544a|chr14:101515010-101515070(+)0.87PDF
hsa-mir-520h|chr19:54245779-54245843(+)tca-mir-3811e|chrLG1:8499630-8499695(+)0.76PDF
hsa-mir-519a-1|chr19:54255663-54255726(+)hsa-mir-487a|chr14:101518792-101518852(+)0.75PDF
hsa-mir-216b|chr2:56227858-56227921(-)hsa-mir-3173|chr14:95604257-95604321(-)0.77PDF
hsa-mir-582|chr5:58999453-58999515(-)cqu-mir-1175|supercont3.86:866115-866178(+)0.81PDF
hsa-mir-142|chr17:56408604-56408666(-)hsa-mir-202|chr10:135061038-135061099(-)0.72PDF
hsa-mir-523|chr19:54201651-54201715(+)hsa-mir-6511a-4|chr16:18437871-18437935(-)0.76PDF
hsa-mir-518e|chr19:54233104-54233166(+)mmu-mir-3070b|chr12:109588607-109588670(+)0.82PDF
hsa-mir-520d|chr19:54223363-54223424(+)mmu-mir-3078|chr14:64591200-64591261(+)0.77PDF
hsa-mir-519a-2|chr19:54265611-54265674(+)cel-mir-49|X:9989244-9989306(+)0.76PDF
hsa-mir-517c|chr19:54244584-54244645(+)bfl-mir-4859|Bf_V2_28:2310469-2310532(+)0.80PDF
hsa-mir-1237|chr11:64136120-64136175(+)hsa-mir-3152|chr9:18573314-18573370(+)0.86PDF
hsa-mir-125a|chr19:52196498-52196545(+)osa-MIR1846a|chr10:528282-528331(+)0.72PDF
hsa-mir-526a-1|chr19:54209517-54209579(+)cqu-mir-1175|supercont3.86:866115-866178(+)0.75PDF
hsa-mir-518a-1|chr19:54234272-54234332(+)hsa-mir-154|chr14:101526103-101526164(+)0.77PDF
hsa-mir-372|chr19:54291148-54291207(+)hsa-mir-676|chrX:69242714-69242771(+)0.82PDF
hsa-mir-581|chr5:53247356-53247415(-)hsa-mir-524|chr19:54214269-54214329(+)0.81PDF
hsa-mir-296|chr20:57392679-57392759(-)hsa-mir-496|chr14:101526910-101526987(+)0.73PDF
hsa-mir-216a|chr2:56216114-56216176(-)cbr-mir-46|chrIII:7878510-7878572(+)0.83PDF
hsa-mir-517a|chr19:54215535-54215598(+)hsa-mir-487a|chr14:101518792-101518852(+)0.78PDF
28S_rRNA-related|chr16:81902036-81902100(-)hsa-mir-1972-2|chr16:70064257-70064325(+)0.80PDF
hsa-mir-3615|chr17:72744765-72744826(+)hsa-mir-544a|chr14:101515010-101515070(+)0.79PDF
hsa-mir-326|chr11:75046150-75046231(-)ppt-MIR1040|scaffold_62:1568574-1568657(+)0.74PDF
hsa-mir-3186|chr17:79418141-79418200(-)cel-mir-4812|X:15242711-15242770(-)0.82PDF
hsa-mir-708|chr11:79113073-79113145(-)cel-mir-358|V:8580855-8580924(-)0.74PDF
hsa-mir-1284|chr3:71591149-71591211(-)ppt-MIR1062|scaffold_49:1228164-1228226(-)0.81PDF
hsa-mir-204|chr9:73424944-73424988(-)cbr-mir-87|chrV:6389737-6389778(+)0.81PDF
U6-related|chrX:67759312-67759374(-)mmu-mir-362|chrX:7241983-7242046(-)0.70PDF
hsa-mir-676|chrX:69242712-69242771(+)bmo-mir-2796|nscaf2962:167783-167841(+)0.85PDF
U6-related|chr13:80943559-80943636(-)bmo-mir-3385|scaffold772:8756-8831(+)0.72PDF
hsa-mir-361|chrX:85158643-85158707(-)tca-mir-3811c-2|chrLG1:8498728-8498793(+)0.79PDF
hsa-mir-140|chr16:69967004-69967069(+)mmu-mir-3070a|chr12:109587958-109588022(+)0.74PDF
hsa-mir-590|chr7:73605540-73605606(+)mmu-mir-1264|chrX:147010614-147010679(+)0.74PDF
hsa-mir-1269|chr4:67142565-67142629(+)cel-mir-49|X:9989244-9989306(+)0.83PDF
hsa-mir-1252|chr12:79813040-79813099(+)hsa-mir-625|chr14:65937834-65937894(+)0.83PDF
hsa-mir-629|chr15:70371724-70371787(-)hsa-mir-362|chrX:49773573-49773635(+)0.74PDF
hsa-mir-3664|chr11:70718389-70718454(-)crm-mir-71|Crem_Contig68:372790-372850(-)0.74PDF
hsa-mir-3126|chr2:69330822-69330882(+)bmo-mir-2796|nscaf2962:167783-167841(+)0.82PDF
hsa-mir-374a|chrX:73507127-73507182(-)hsa-mir-885|chr3:10436178-10436236(-)0.72PDF
hsa-mir-545|chrX:73506959-73507022(-)cqu-mir-1175|supercont3.86:866115-866178(+)0.76PDF
hsa-mir-421|chrX:73438224-73438284(-)bmo-mir-993b|nscaf2734:2638-2699(-)0.74PDF
hsa-mir-548l|chr11:94199673-94199733(-)mmu-mir-3098|chr6:125195807-125195867(+)0.79PDF
hsa-mir-493|chr14:101335409-101335475(+)mmu-mir-216a|chr11:28757016-28757080(+)0.76PDF
hsa-mir-329-1|chr14:101493112-101493193(+)osa-MIR5538|chr10:21265771-21265854(+)0.76PDF
hsa-mir-409|chr14:101531650-101531707(+)mmu-mir-3072|chr12:109747893-109747951(+)0.72PDF
hsa-mir-411|chr14:101489675-101489732(+)tca-mir-315|chrLG1:1751226-1751284(+)0.82PDF
hsa-mir-135a-2|chr12:97957610-97957671(+)bmo-mir-927|nscaf2575:1011465-1011526(+)0.78PDF
hsa-mir-337|chr14:101340851-101340913(+)hsa-mir-544a|chr14:101515010-101515070(+)0.77PDF
hsa-mir-539|chr14:101513665-101513731(+)hsa-mir-6511a-4|chr16:18437871-18437935(-)0.75PDF
hsa-mir-487a|chr14:101518794-101518854(+)hsa-mir-544a|chr14:101515010-101515070(+)0.85PDF
hsa-mir-656|chr14:101533046-101533125(+)hsa-mir-3199-1|chr22:28316522-28316598(-)0.70PDF
hsa-mir-154|chr14:101526104-101526165(+)hsa-mir-544a|chr14:101515010-101515070(+)0.78PDF
hsa-mir-3157|chr10:97824076-97824148(-)hsa-mir-548f-1|chr10:56367635-56367706(-)0.78PDF
5S_rRNA-related|chr10:98379147-98379205(+)ame-mir-9b|Group15.33:20342-20400(-)0.76PDF
hsa-mir-9-2|chr5:87962681-87962743(-)mmu-mir-3067|chr12:81166165-81166225(+)0.75PDF
hsa-mir-655|chr14:101515908-101515970(+)mmu-mir-3088|chr2:28733286-28733345(+)0.78PDF
hsa-mir-1185-1|chr14:101509327-101509389(+)mmu-mir-3105|chr7:144009267-144009327(+)0.77PDF
U6-related|chr5:85958973-85959030(-)mmu-mir-5617|chrX:20863126-20863182(-)0.74PDF
hsa-mir-136|chr14:101351050-101351112(+)hsa-mir-642a|chr19:46178198-46178260(+)0.70PDF
hsa-mir-382|chr14:101520651-101520712(+)hsa-mir-513c|chrX:146271232-146271293(-)0.72PDF
hsa-mir-412|chr14:101531800-101531858(+)osa-MIR395v|chr09:6605582-6605641(-)0.75PDF
hsa-mir-380|chr14:101491356-101491414(+)hsa-mir-676|chrX:69242714-69242771(+)0.81PDF
hsa-mir-1307|chr10:105154054-105154118(-)bfl-mir-34c-1|Bf_V2_269:1088514-1088576(-)0.75PDF
hsa-mir-3922|chr12:104985422-104985484(+)cel-mir-254|X:11333485-11333547(-)0.78PDF
hsa-mir-1251|chr12:97885670-97885710(+)cbr-mir-87|chrV:6389737-6389778(+)0.73PDF
hsa-mir-541|chr14:101530840-101530906(+)crm-mir-46|Crem_Contig12:1283924-1283990(-)0.75PDF
hsa-mir-1304|chr11:93466855-93466914(-)hsa-mir-526b|chr19:54197660-54197720(+)0.77PDF
hsa-mir-431|chr14:101347362-101347428(+)hsa-mir-493|chr14:101335411-101335476(+)0.77PDF
hsa-mir-376a-1|chr14:101507124-101507184(+)hsa-mir-370|chr14:101377488-101377547(+)0.85PDF
hsa-mir-7-1|chr9:86584684-86584751(-)crm-mir-58a|Crem_Contig6993:66-133(+)0.71PDF
hsa-mir-544|chr14:101515010-101515071(+)hsa-mir-154|chr14:101526103-101526164(+)0.81PDF
hsa-mir-432|chr14:101350832-101350902(+)cqu-mir-9|supercont3.83:64733-64802(+)0.78PDF
hsa-mir-370|chr14:101377485-101377547(+)hsa-mir-544a|chr14:101515010-101515070(+)0.72PDF
hsa-mir-3170|chr13:98860774-98860808(+)osa-MIR1428b|chr01:25389379-25389410(+)0.88PDF
hsa-mir-107|chr10:91352511-91352573(-)hsa-mir-519a-1|chr19:54255662-54255724(+)0.78PDF
hsa-mir-1287|chr10:100154986-100155049(-)cbr-mir-51|chrIV:5734749-5734809(+)0.78PDF
hsa-mir-2277|chr5:92956412-92956477(-)mmu-mir-3070a|chr12:109587958-109588022(+)0.76PDF
hsa-mir-9-3|chr15:89911260-89911325(+)cel-mir-791|X:5809325-5809389(+)0.75PDF
hsa-mir-1255a|chr4:102251481-102251544(-)cel-mir-355|II:11833495-11833556(-)0.80PDF
hsa-mir-379|chr14:101488406-101488467(+)cbr-mir-46|chrIII:7878510-7878572(+)0.80PDF
hsa-mir-302a|chr4:113569340-113569401(-)bmo-mir-9a|nscaf2527:9289-9351(-)0.73PDF
hsa-mir-455|chr9:116971727-116971789(+)mmu-mir-3076|chr14:30572149-30572208(+)0.72PDF
hsa-mir-34b|chr11:111383674-111383734(+)osa-MIR395v|chr09:6605582-6605641(-)0.84PDF
hsa-mir-30b|chr8:135812772-135812835(-)cqu-mir-1175|supercont3.86:866115-866178(+)0.81PDF
hsa-mir-505|chrX:139006316-139006399(-)osa-MIR5538|chr10:21265771-21265854(+)0.77PDF
hsa-mir-3144|chr6:120336335-120336393(+)bfl-mir-2068|Bf_V2_32:1589826-1589883(-)0.90PDF
hY1_RNA-related|chr5:131803874-131803943(+)crm-mir-58a|Crem_Contig6993:66-133(+)0.71PDF
IRES_c-myc_RF00216|chr8:128748443-128748498(+)hsa-mir-676|chrX:69242714-69242771(+)0.77PDF
hsa-mir-3657|chr12:112475428-112475488(-)mmu-mir-1b|chr18:10785486-10785548(+)0.79PDF
hsa-mir-548d-1|chr8:124360288-124360325(-)ppt-MIR1051|scaffold_56:1824653-1824690(+)0.76PDF
hsa-mir-942|chr1:117637275-117637340(+)hsa-mir-500b|chrX:49775286-49775351(+)0.78PDF
hsa-mir-1264|chrX:113887129-113887194(+)cel-mir-49|X:9989244-9989306(+)0.81PDF
hsa-mir-32|chr9:111808509-111808574(-)tca-mir-3811e|chrLG1:8499630-8499695(+)0.72PDF
hsa-mir-1243|chr4:114027985-114028045(+)hsa-mir-519b|chr19:54198478-54198538(+)0.79PDF
hsa-mir-548e|chr10:112748695-112748757(+)mmu-mir-3078|chr14:64591200-64591261(+)0.78PDF
hsa-mir-125b-1|chr11:121970516-121970556(-)cbr-mir-87|chrV:6389737-6389778(+)0.74PDF
hsa-mir-199b|chr9:131007021-131007086(-)cel-mir-791|X:5809325-5809389(+)0.73PDF
hsa-mir-576|chr4:110409868-110409931(+)cqu-mir-1175|supercont3.86:866115-866178(+)0.80PDF
hsa-mir-100|chr11:122022946-122023005(-)mmu-mir-190b|chr3:90070030-90070090(+)0.77PDF
18S_rRNA-related|chr2:133013386-133013474(-)osa-MIR2864|chr12:25631128-25631216(-)0.70PDF
hsa-mir-1277|chrX:117520365-117520425(+)mmu-mir-3104|chr7:141992180-141992241(+)0.79PDF
chr3_Glu_CTC|chr3:125413172-125413241(-)cbr-mir-2225|chrII:1875319-1875386(+)0.74PDF
hsa-mir-335|chr7:130135965-130136025(+)hsa-mir-519b|chr19:54198478-54198538(+)0.74PDF
hsa-mir-490|chr7:136587950-136588013(+)mmu-mir-5615-1|chr10:81104614-81104673(-)0.74PDF
hsa-mir-96|chr7:129414536-129414602(-)mmu-mir-216a|chr11:28757016-28757080(+)0.75PDF
hsa-mir-600|chr9:125873837-125873899(-)hsa-mir-6503|chr11:59976557-59976619(-)0.80PDF
hsa-mir-30d|chr8:135817119-135817184(-)mmu-mir-3108|chr8:108936867-108936931(+)0.75PDF
hsa-mir-652|chrX:109298574-109298640(+)hsa-mir-3200|chr22:31127553-31127621(+)0.73PDF
hsa-mir-29b-1|chr7:130562223-130562290(-)hsa-mir-3200|chr22:31127553-31127621(+)0.73PDF
hsa-mir-592|chr7:126698164-126698224(-)cbr-mir-246|chrIV:5799938-5799999(-)0.86PDF
hsa-mir-181b-2|chr9:127456001-127456062(+)hsa-mir-154|chr14:101526103-101526164(+)0.70PDF
hsa-mir-551b|chr3:168269662-168269722(+)cel-mir-4812|X:15242711-15242770(-)0.86PDF
hsa-mir-145|chr5:148810222-148810287(+)mmu-mir-3070a|chr12:109587958-109588022(+)0.74PDF
hsa-mir-151|chr8:141742682-141742744(-)hsa-mir-642a|chr19:46178198-46178260(+)0.77PDF
hsa-mir-767|chrX:151561917-151561976(-)osa-MIR395v|chr09:6605582-6605641(-)0.76PDF
hsa-mir-199a-2|chr1:172113691-172113756(-)hsa-mir-200a|chr1:1103255-1103319(+)0.73PDF
hsa-mir-153-2|chr7:157367037-157367101(-)tca-mir-3851c|chrLG6:12644179-12644243(+)0.78PDF
chr1_Asp_GTC|chr1:161574597-161574659(+)hsa-mir-3123|chr1:241295577-241295636(+)0.74PDF
hsa-mir-190b|chr1:154166130-154166209(-)ppt-MIR1034|scaffold_202:211339-211420(-)0.78PDF
hsa-mir-105-1|chrX:151560699-151560760(-)hsa-mir-190a|chr15:63116167-63116228(+)0.74PDF
hsa-mir-3919|chr3:159000447-159000512(+)osa-MIR398b|chr07:14597636-14597701(-)0.78PDF
hsa-mir-105-2|chrX:151562892-151562953(-)hsa-mir-190a|chr15:63116167-63116228(+)0.74PDF
mir-548_RF01061|chr5:150512463-150512505(-)cre-MIR912|scaffold_35:929979-930022(-)0.83PDF
hsa-mir-585|chr5:168690616-168690674(-)tca-mir-3840|chrLG3:19008293-19008351(+)0.74PDF
hsa-mir-378|chr5:149112390-149112453(+)hsa-mir-6511a-4|chr16:18437871-18437935(-)0.76PDF
hsa-mir-556|chr1:162312348-162312412(+)cbr-mir-46|chrIII:7878510-7878572(+)0.77PDF
hsa-mir-224|chrX:151127055-151127124(-)dme-mir-973|X:19445577-19445647(+)0.72PDF
hsa-mir-10b|chr2:177015056-177015117(+)crm-mir-237|Crem_Contig43:596121-596181(+)0.83PDF
hsa-mir-3939|chr6:167411319-167411376(-)cel-mir-794|I:12595694-12595752(+)0.89PDF
hsa-mir-452|chrX:151128108-151128172(-)hsa-mir-34b|chr11:111383673-111383736(+)0.70PDF
chr7_Cys_GCA|chr7:149344030-149344087(-)osa-MIR171h|chr04:28297325-28297382(+)0.71PDF
hsa-mir-671|chr7:150935534-150935596(+)hsa-mir-379|chr14:101488405-101488467(+)0.72PDF
hsa-mir-1294|chr5:153726710-153726772(+)cqu-mir-10|supercont3.12:95999-96062(-)0.79PDF
tRNA_RF00005|chr1:161492944-161493002(+)mmu-mir-5626|chr9:70405694-70405753(-)0.76PDF
hsa-mir-3692|chr6:157950168-157950229(+)hsa-mir-518d|chr19:54238144-54238204(+)0.82PDF
hsa-mir-3912|chr5:170813677-170813740(-)cel-mir-259|V:10539018-10539082(-)0.73PDF
hsa-mir-2114|chrX:149396251-149396308(+)hsa-mir-676|chrX:69242714-69242771(+)0.91PDF
hsa-mir-937|chr8:144895140-144895199(-)hsa-mir-624|chr14:31483864-31483925(-)0.81PDF
hsa-mir-9-1|chr1:156390143-156390207(-)hsa-mir-493|chr14:101335411-101335476(+)0.75PDF
hsa-mir-561|chr2:189162242-189162301(+)ppc-mir-2274|Ppa_Contig180:297859-297920(+)0.79PDF
hsa-mir-153-1|chr2:220158845-220158907(-)hsa-mir-3189|chr19:18497380-18497441(+)0.84PDF
hsa-mir-3129|chr2:189997765-189997828(-)osa-MIR395v|chr09:6605582-6605641(-)0.76PDF
hY4_RNA-related|chr2:201727865-201727956(-)hsa-mir-1294|chr5:153726710-153726803(+)0.73PDF
hsa-mir-181b-1|chr1:198828015-198828078(-)mmu-mir-3075|chr14:25534451-25534513(+)0.71PDF
hsa-mir-1245|chr2:189842819-189842884(+)hsa-mir-585|chr5:168690626-168690689(-)0.77PDF
hsa-mir-135b|chr1:205417448-205417511(-)mmu-mir-3098|chr6:125195807-125195867(+)0.79PDF
hsa-mir-181a-1|chr1:198828196-198828260(-)mmu-mir-329|chr12:109713502-109713565(+)0.73PDF
hsa-mir-28|chr3:188406579-188406645(+)cel-mir-791|X:5809325-5809389(+)0.75PDF
hsa-mir-570|chr3:195426293-195426353(+)hsa-mir-3189|chr19:18497380-18497441(+)0.75PDF
hsa-mir-1537|chr1:236016297-236016356(-)hsa-mir-548ak|chr10:12172759-12172815(-)0.75PDF
hsa-mir-1305|chr4:183090457-183090518(+)mmu-mir-3104|chr7:141992180-141992241(+)0.81PDF
hsa-mir-205|chr1:209605510-209605570(+)cbr-mir-51|chrIV:5734749-5734809(+)0.81PDF
hsa-mir-1278|chr1:193105642-193105703(+)cel-mir-785|X:3004677-3004737(+)0.82PDF
hsa-mir-33b|chr17:17717170-17717230(-)mmu-mir-3098|chr6:125195807-125195867(+)0.79PDF
hsa-mir-320a|chr8:22102485-22102532(-)osa-MIR5536|chr09:9139162-9139210(-)0.77PDF
hsa-mir-1301|chr2:25551518-25551580(-)hsa-mir-6503|chr11:59976557-59976619(-)0.77PDF
chr14_Thr_TGT|chr14:21099297-21099359(-)cel-mir-355|II:11833495-11833556(-)0.71PDF
hsa-mir-491|chr9:20716117-20716175(+)osa-MIR395v|chr09:6605582-6605641(-)0.81PDF
hsa-mir-1915|chr10:21785500-21785560(-)hsa-mir-519b|chr19:54198478-54198538(+)0.83PDF
5S_rRNA-related|chr10:19922599-19922631(-)bmo-mir-2851-2|nscaf2176:345088-345121(+)0.74PDF
28S_rRNA-related|chr19:24183068-24183099(-)osa-MIR1857|chr11:2729893-2729925(+)0.72PDF
hsa-mir-548v|chr8:17539095-17539155(-)hsa-mir-513c|chrX:146271232-146271293(-)0.80PDF
chr9_Met_CAT|chr9:19404030-19404072(+)ppt-MIR1030f|scaffold_435:112787-112823(-)0.74PDF
hsa-mir-130b|chr22:22007594-22007666(+)spu-mir-153|gb0.81PDF
hsa-mir-125b-2|chr21:17962572-17962635(+)mmu-mir-3105|chr7:144009267-144009327(+)0.76PDF
hsa-mir-1306|chr22:20073594-20073655(+)cbr-mir-246|chrIV:5799938-5799999(-)0.84PDF
hsa-mir-3189|chr19:18497379-18497439(+)mmu-mir-3104|chr7:141992180-141992241(+)0.77PDF
hsa-mir-99a|chr21:17911418-17911480(+)mmu-mir-879|chr5:9375712-9375772(+)0.74PDF

Listed below are the profile alignment results for 523 ncRNA from ENCODE dataset (query) with miRNA from miRRPdb (subject)

QuerySubjectScoreAlignment
n-a|chr3:12705808-12705865(+)hsa-mir-885|chr3:10436178-10436236(-)0.81PDF
n-a|chr9:14441124-14441179(+)tca-mir-3871|chrLG7:2957140-2957194(+)0.72PDF
n-a|chr19:2082497-2082527(-)osa-MIR167a|chr12:25443302-25443332(+)0.74PDF
n-a|chr19:13251906-13251958(+)ath-MIR5995b|chr2:10026962-10027034(+)0.73PDF
n-a|chr12:12874013-12874094(+)ath-MIR5648|chr1:11499446-11499563(+)0.71PDF
n-a|chr2:5832515-5832581(+)bfl-mir-124|Bf_V2_32:1879934-1879995(+)0.73PDF
n-a|chr7:6063417-6063466(+)osa-MIR5536|chr09:9139162-9139210(-)0.73PDF
n-a|chr12:12957718-12957764(+)ath-MIR4240|chr4:10711712-10711759(-)0.73PDF
n-a|chr18:12326145-12326180(+)bmo-mir-2775b|nscaf2883:1275550-1275585(-)0.77PDF
n-a|chr19:1136007-1136073(+)bmo-mir-3204b|nscaf1690:5500376-5500441(+)0.75PDF
n-a|chr9:5093212-5093270(+)crm-mir-246-1|Crem_Contig1306:7321-7380(-)0.70PDF
n-a|chr3:5058313-5058386(-)spu-mir-2006|gb0.76PDF
n-a|chrX:12996176-12996244(+)tca-mir-3856|chrLG6:4494303-4494364(+)0.72PDF
n-a|chr19:14126499-14126571(+)tca-mir-3835|chrLG2:3085142-3085211(+)0.70PDF
n-a|chr20:5986767-5986825(+)hsa-mir-4766|chr22:41209895-41209955(-)0.76PDF
n-a|chr18:8891639-8891689(+)bmo-mir-2788|nscaf2829:2326311-2326365(-)0.72PDF
n-a|chr19:811542-811568(+)hsa-mir-3610|chr8:117887000-117887027(-)0.84PDF
n-a|chr4:7059851-7059880(-)ath-MIR1886|chr2:15611873-15611902(+)0.74PDF
n-a|chr8:6602696-6602755(+)bfl-mir-2068|Bf_V2_32:1589826-1589883(-)0.79PDF
RNAz     Sequence        GCUGCCAUGUCUAAGAAGAAAACUUUGGAGAAAAAUUUUCUUCUUAGACAUGGCAACGU
RNAz     Consensus SS    ..((((((((((((((((((((.(((.....))).))))))))))))))))))))....
CMfinder Sequence        CUGCCAUGUCUAAGAAGAAAACUUUGGAGAAAAAUUUUCUUCUUAG
CMfinder Consensus SS    :::::::::<<<<<<<<<<<<-<<<_____>>>->>>>>>>>>>>>
n-a|chr10:5729069-5729135(+)hsa-mir-642a|chr19:46178198-46178260(+)0.71PDF
n-a|chr20:10400309-10400367(-)hsa-mir-518f|chr19:54203282-54203342(+)0.73PDF
n-a|chr11:2965667-2965714(-)ame-mir-3734|Group6.21:301078-301126(+)0.73PDF
n-a|chr19:4445983-4446040(+)bmo-mir-2796|nscaf2962:167783-167841(+)0.84PDF
n-a|chr19:5661691-5661754(+)bmo-mir-3204b|nscaf1690:5500376-5500441(+)0.75PDF
n-a|chr5:9053934-9053998(-)ppc-mir-240|Ppa_Contig140:224093-224156(-)0.79PDF
n-a|chr18:3885359-3885423(-)hsa-mir-516a-2|chr19:54264399-54264464(+)0.78PDF
RNAz     Sequence        CCCUAGUGGCCAGAGGGCUUAUGAUAUAUUGUGAGAGACAUGUCAUAAGCCCUUUGGCCACUAG
RNAz     Consensus SS    ((((.........))))...............................................
CMfinder Sequence        GUGGUCAGAGGGCUUAUGAUAUAUUGUGAGAGCCAUGUCAUAAGCCUUUUGGCCAC
CMfinder Consensus SS    <<<<<<<<<<<<<<<<<<<<<<---<<____>>->>>>>>>>>>>>>>>>>>>>>>
n-a|chr16:3201200-3201248(+)tca-mir-3890|chrLG3:21939384-21939436(-)0.74PDF
n-a|chr10:5136574-5136634(+)hsa-mir-301b|chr22:22007279-22007339(+)0.71PDF
n-a|chr10:3133228-3133281(-)hsa-mir-885|chr3:10436178-10436236(-)0.71PDF
n-a|chr4:1005437-1005473(-)osa-MIR2877|chr04:28400265-28400301(-)0.72PDF
n-a|chr1:8319738-8319817(-)osa-MIR156f|chr08:21475623-21475702(+)0.72PDF
n-a|chr10:1450979-1451040(-)ppc-mir-2233|Ppa_Contig180:297988-298048(+)0.84PDF
n-a|chr19:11646908-11646974(-)hsa-mir-516a-2|chr19:54264399-54264464(+)0.81PDF
n-a|chr19:8509666-8509698(-)hsa-mir-3199-2|chr22:28316514-28316544(+)0.73PDF
n-a|chr12:6611373-6611430(+)ame-mir-9b|Group15.33:20342-20400(-)0.83PDF
n-a|chr20:6168461-6168497(-)ame-mir-3763|GroupUn.1127:12726-12763(+)0.73PDF
n-a|chr10:8094668-8094737(-)bmo-mir-3204b|nscaf1690:5500376-5500441(+)0.71PDF
n-a|chr5:5396443-5396500(+)tca-mir-3871|chrLG7:2957140-2957194(+)0.77PDF
n-a|chr18:5085875-5085920(-)cre-MIR912|scaffold_35:929979-930022(-)0.78PDF
n-a|chr10:494442-494514(+)ath-MIR2939|chr5:19566986-19567060(+)0.71PDF
n-a|chr19:10212889-10212953(+)cbr-mir-64a|chrIII:218927-218991(-)0.80PDF
n-a|chr11:6633559-6633629(+)cel-mir-1020|III:10047655-10047724(-)0.76PDF
n-a|chr11:238025-238110(+)ppt-MIR1034|scaffold_202:211339-211420(-)0.71PDF
n-a|chr19:13263866-13263923(+)ame-mir-3731|Group5.13:407605-407690(+)0.78PDF
n-a|chr1:8085363-8085434(+)osa-MIR399b|chr02:7664038-7664112(-)0.78PDF
n-a|chr5:14208891-14208947(+)mmu-mir-3091|chr2:180257545-180257601(+)0.75PDF
n-a|chr16:2029430-2029484(-)bfl-mir-33-1|Bf_V2_21:4947537-4947596(-)0.71PDF
n-a|chr19:8454188-8454245(-)osa-MIR5514|chr02:22834339-22834382(+)0.82PDF
n-a|chr11:606377-606441(+)tca-mir-3811c-2|chrLG1:8498728-8498793(+)0.80PDF
n-a|chr16:4612575-4612640(-)mmu-mir-344i|chr7:62085233-62085298(-)0.79PDF
n-a|chr19:6172500-6172567(+)osa-MIR5075|chr11:7874360-7874425(-)0.74PDF
n-a|chr11:2151976-2152045(-)cbr-mir-85|chrII:3615939-3616004(-)0.73PDF
n-a|chr17:4458251-4458311(-)hsa-mir-2116|chr15:59463392-59463452(-)0.81PDF
n-a|chr11:10326619-10326664(+)bmo-mir-2841|nscaf2828:3962841-3962887(-)0.74PDF
n-a|chr16:3183071-3183098(-)osa-MIR5162|chr12:16418640-16418668(+)0.71PDF
n-a|chr10:4926782-4926850(+)cbr-mir-44|chrII:8049280-8049348(-)0.80PDF
RNAz     Sequence        AAACUUAUGAAAAGUGACUGUUUUUAAAAGACUAGUCUGAAUCCAAACAGUCCCUUUU_AUAAGUUUGG
RNAz     Consensus SS    ((((((((.(((((.((((((((.....(((....)))......)))))))).))))).))))))))..
CMfinder Sequence        AAACUUAUGAAAAGUGACUGUUUUUAAAAGACUAGUCUGAAUCCAAACAGUCCCUUUUAUAAGUUU
CMfinder Consensus SS    :<<<<<<<<<<----<<<<<<<<-----<<<____>>>------>>>>>>>>--->>>>>>>>>>:
n-a|chr9:3507951-3508000(+)cre-MIR905|scaffold_75:370868-370928(+)0.78PDF
n-a|chr20:5749477-5749513(-)hsa-mir-647|chr20:62574022-62574057(-)0.71PDF
n-a|chr17:8744436-8744465(-)tca-mir-3903|chrLG1:10618057-10618085(+)0.77PDF
n-a|chr17:30819042-30819104(-)tca-mir-3842|chrLG3:559289-559350(+)0.73PDF
n-a|chr21:28290707-28290791(-)hsa-mir-4742|chr1:224585929-224586013(-)0.72PDF
n-a|chr15:33023430-33023485(+)hsa-mir-494|chr14:101495985-101496042(+)0.72PDF
n-a|chr6:27805298-27805348(+)mmu-mir-5618|chr9:7784390-7784440(+)0.74PDF
n-a|chr9:35056625-35056685(-)hsa-mir-885|chr3:10436178-10436236(-)0.78PDF
n-a|chr6:36937723-36937751(-)osa-MIR439j|chr10:15738026-15738054(-)0.81PDF
n-a|chr8:30927617-30927662(+)ath-MIR5656|chr1:1727361-1727408(+)0.72PDF
n-a|chr1:27108555-27108593(+)hsa-mir-4654|chr1:162126906-162126944(+)0.76PDF
n-a|chr21:30375162-30375208(+)hsa-mir-3917|chr1:26232904-26232945(-)0.71PDF
n-a|chr9:29035559-29035621(-)cel-mir-785|X:3004677-3004737(+)0.77PDF
n-a|chr20:37145233-37145270(+)ppt-MIR1030f|scaffold_435:112787-112823(-)0.76PDF
n-a|chr15:33036882-33036938(+)nve-mir-2027|scaffold_241:295192-295245(+)0.76PDF
RNAz     Sequence        ACAUUGUACAGAUGCAGGAUAACAAUGCAGUGUUAUCCUGCAUCUGUACAAUCAA
RNAz     Consensus SS    ..((((((((((((((((((((((......))))))))))))))))))))))...
CMfinder Sequence        GUACAGAUGCAGGAUAACAAUGCAGUGUUAU
CMfinder Consensus SS    ::<<<--<<<<_________>>>>->>>:::
n-a|chr10:31608140-31608189(+)hsa-mir-1248|chr3:186504461-186504508(+)0.72PDF
n-a|chr6:35995542-35995606(+)osa-MIR5525|chr09:3903322-3903385(-)0.74PDF
n-a|chr22:34199997-34200056(-)hsa-mir-676|chrX:69242714-69242771(+)0.75PDF
n-a|chr14:35162612-35162660(+)mmu-mir-374c|chrX:103573085-103573133(+)0.72PDF
n-a|chr22:30403040-30403102(+)hsa-mir-6503|chr11:59976557-59976619(-)0.79PDF
n-a|chrX:28036700-28036760(+)ppc-mir-2274|Ppa_Contig180:297859-297920(+)0.84PDF
RNAz     Sequence        AUAUC___CUUUUCUAGGGCUGAAUA_______ACCAUAUGAAUAU___UAUUCAGCCUUAAAAAAGGAUACU
RNAz     Consensus SS    ........(((((.((((((((((((.......................)))))))))))).)))))......
CMfinder Sequence        UAUCCUUUUCUAGGGCUGAACAACCAUAUGAAUAUUAUUCAGACUUAAAAAAGGAUA
CMfinder Consensus SS    :<<<<<<<<-<<<<<<<<<<_________________>>>>>>>>>>->>>>>>>>:
n-a|chr19:34664115-34664184(-)mmu-mir-5623|chr19:58051167-58051236(+)0.70PDF
n-a|chr5:36606718-36606779(+)hsa-mir-664b|chrX:153996871-153996931(+)0.82PDF
n-a|chr9:34329578-34329648(+)osa-MIR395s|chr04:32437845-32437915(+)0.72PDF
n-a|chr1:28908344-28908384(-)hsa-mir-3184|chr17:28444113-28444149(-)0.71PDF
n-a|chr21:34852498-34852540(+)cbr-mir-87|chrV:6389737-6389778(+)0.72PDF
n-a|chr6:28555569-28555617(-)osa-MIR5536|chr09:9139162-9139210(-)0.80PDF
RNAz     Sequence        GCCU_______________CAGUUGUU________UAGUCACGGAGCACAGAGCCGUGAC__UAAACAACUGU_
RNAz     Consensus SS    .....................................(((.(((.........))).)))..............
CMfinder Sequence        NA
CMfinder Consensus SS    NA
n-a|chr7:27022991-27023022(-)osa-MIR167a|chr12:25443302-25443332(+)0.80PDF
n-a|chr20:34635266-34635341(-)osa-MIR5161|chr12:12081119-12081163(+)0.70PDF
n-a|chr13:31039644-31039683(-)hsa-mir-3917|chr1:26232904-26232945(-)0.76PDF
n-a|chr3:34057485-34057525(+)ath-MIR779|chr2:9560866-9560907(+)0.81PDF
n-a|chr6:30011698-30011724(-)ppt-MIR1048|scaffold_248:120191-120219(-)0.76PDF
n-a|chr7:32027148-32027193(+)ath-MIR4240|chr4:10711712-10711759(-)0.76PDF
n-a|chr1:27237983-27238011(-)osa-MIR5162|chr12:16418640-16418668(+)0.80PDF
n-a|chr17:27919475-27919531(+)tca-mir-3840|chrLG3:19008293-19008351(+)0.78PDF
n-a|chr2:36662751-36662811(+)hsa-mir-520c|chr19:54210722-54210782(+)0.77PDF
RNAz     Sequence        CAAAAGUAAUCGCAGUUUUUGUCAUUACUUUCACUGGCAAAAAC_GC_AUUGCUUUUGCA
RNAz     Consensus SS    ((((((((((.((.((.((((((............)))))).)).)).))))))))))..
CMfinder Sequence        CAAAAGUAAUCGCAGUUUUUGUCAUUACUUUCAAUGGCAAAAACAGCGAUUGCUUUUG
CMfinder Consensus SS    <<<<<<<<<<<<<-<<<<<<<<<<<<______>>>>>>>>>>>>->>>>>>>>>>>>>
n-a|chr21:28208606-28208691(-)osa-MIR156f|chr08:21475623-21475702(+)0.72PDF
n-a|chr19:35820103-35820133(+)osa-MIR439j|chr10:15738111-15738142(-)0.74PDF
n-a|chr14:34034242-34034274(+)hsa-mir-3610|chr8:117887000-117887027(-)0.76PDF
n-a|chr16:30645869-30645900(+)ppt-MIR1048|scaffold_248:120191-120219(-)0.76PDF
n-a|chr6:32938490-32938544(-)tca-mir-3871|chrLG7:2957140-2957194(+)0.81PDF
n-a|chr21:35898994-35899122(-)hsa-mir-548y|chr14:48230208-48230278(-)0.71PDF
n-a|chr20:36151972-36152007(-)bmo-mir-2851-2|nscaf2176:345088-345121(+)0.72PDF
n-a|chr8:33371274-33371333(+)hsa-mir-548ak|chr10:12172759-12172815(-)0.75PDF
n-a|chr13:36919793-36919852(+)hsa-mir-491|chr9:20716116-20716174(+)0.74PDF
n-a|chr13:27259474-27259536(+)mmu-mir-3104|chr7:141992180-141992241(+)0.79PDF
RNAz     Sequence        NA
RNAz     Consensus SS    NA
CMfinder Sequence        UAGCCACUAGCCACAUGUCAGUUCAUGCUUUUAAGGCUAUAUGUGCCUAGUGGCUGCUG
CMfinder Consensus SS    <<<<<<<<<<-<<<<<<<-<<<<___________>>>>>>>>>>>->>>>>>>>>>:::
n-a|chr6:35632500-35632558(-)hsa-mir-518d|chr19:54238144-54238204(+)0.76PDF
RNAz     Sequence        UUUCAACUACUACCUCUAUUAGUAUAACUCCCAAAUCCUAAUAGAGGUAGUAGCUGAA
RNAz     Consensus SS    ..(((.((((((.((((((.....................)))))).)))))).))).
CMfinder Sequence        UCAACUAUUACCUCUAUUAGUAUAACUCCCAAAUCCUAAUAGAGGUAGUAGCUGA
CMfinder Consensus SS    :::::::::::::::::::::::::::::::::::::::::::::::::::::::
n-a|chr17:28088320-28088359(-)bmo-mir-2808b|nscaf2964:1385681-1385711(+)0.71PDF
n-a|chr19:37019096-37019140(-)osa-MIR167c|chr03:33123590-33123633(+)0.72PDF
n-a|chr14:32545969-32546029(-)hsa-mir-624|chr14:31483864-31483925(-)0.82PDF
n-a|chr6:28849690-28849740(+)tca-mir-3876|chrLG9:8557825-8557875(+)0.78PDF
n-a|chr13:30969815-30969879(+)osa-MIR1879|chr10:5651860-5651927(+)0.71PDF
n-a|chr21:28168655-28168694(+)bmo-mir-2855|nscaf2912:142836-142872(-)0.74PDF
n-a|chr20:34309769-34309828(-)hsa-mir-369|chr14:101531939-101532000(+)0.73PDF
n-a|chr1:27998666-27998703(-)cqu-mir-133|supercont3.1189:55748-55784(+)0.77PDF
n-a|chr16:30418893-30418976(+)ppt-MIR1023e|scaffold_51:960517-960596(+)0.76PDF
n-a|chr19:37569063-37569100(-)ath-MIR779|chr2:9560866-9560907(+)0.71PDF
n-a|chr7:44112974-44113027(-)hsa-mir-548ak|chr10:12172759-12172815(-)0.78PDF
n-a|chr8:40030371-40030493(-)bmo-mir-3384|nscaf1690:1480845-1480966(-)0.70PDF
n-a|chr15:45480123-45480165(-)hsa-mir-3184|chr17:28444113-28444149(-)0.70PDF
n-a|chr17:44272059-44272102(-)osa-MIR5146|chr01:22417283-22417329(+)0.74PDF
n-a|chr4:40504065-40504124(-)mmu-mir-3067|chr12:81166165-81166225(+)0.79PDF
n-a|chr3:48672816-48672892(-)hsa-mir-548y|chr14:48230208-48230278(-)0.71PDF
n-a|chr19:44669257-44669296(+)osa-MIR395l|chr08:3299060-3299093(+)0.71PDF
n-a|chr8:48846117-48846179(-)cbr-mir-51|chrIV:5734749-5734809(+)0.81PDF
n-a|chr12:46753697-46753781(-)osa-MIR1877|chr09:21043496-21043539(+)0.73PDF
n-a|chr20:44992967-44993029(-)osa-MIR395r|chr04:32437703-32437768(+)0.78PDF
n-a|chr22:37880522-37880596(-)hsa-mir-431|chr14:101347359-101347426(+)0.71PDF
n-a|chr13:41342495-41342547(-)nve-mir-2027|scaffold_241:295192-295245(+)0.77PDF
n-a|chr15:39880876-39880901(+)osa-MIR5162|chr12:16418640-16418668(+)0.72PDF
n-a|chr17:40575239-40575274(-)osa-MIR1428b|chr01:25389379-25389410(+)0.75PDF
n-a|chr5:39074428-39074495(-)hsa-mir-6511a-4|chr16:18437871-18437935(-)0.73PDF
n-a|chr17:39684513-39684560(-)hsa-mir-1248|chr3:186504461-186504508(+)0.71PDF
n-a|chr6:42296819-42296849(-)osa-MIR1428f|chr07:5450399-5450430(-)0.84PDF
n-a|chr20:47630203-47630231(+)osa-MIR1428b|chr01:25389379-25389410(+)0.80PDF
n-a|chr15:44828807-44828875(-)osa-MIR319b|chr01:6676582-6676646(-)0.77PDF
n-a|chr17:41150465-41150516(+)hsa-mir-374c|chrX:73438391-73438443(+)0.72PDF
n-a|chr11:47606076-47606109(+)hsa-mir-3199-2|chr22:28316514-28316544(+)0.71PDF
n-a|chr10:47008395-47008445(+)ame-mir-3734|Group6.21:301078-301126(+)0.71PDF
n-a|chr22:43820948-43820975(-)osa-MIR2872|chr11:2520915-2520944(+)0.73PDF
n-a|chr6:44214837-44214895(+)hsa-mir-137|chr1:98511648-98511707(-)0.73PDF
n-a|chr7:45026189-45026221(-)osa-MIR164e|chr03:10541166-10541196(+)0.76PDF
n-a|chrX:48814431-48814508(-)hsa-mir-548al|chr11:74110291-74110367(+)0.82PDF
n-a|chr4:47709037-47709144(+)hsa-mir-518c|chr19:54211992-54212072(+)0.71PDF
n-a|chr2:43453664-43453743(-)ppt-MIR1055|scaffold_391:252837-252876(-)0.74PDF
n-a|chr22:46156409-46156474(+)hsa-mir-516a-2|chr19:54264399-54264464(+)0.78PDF
n-a|chr1:44514151-44514210(+)cbr-mir-246|chrIV:5799938-5799999(-)0.76PDF
n-a|chr19:38534244-38534304(+)tca-mir-3856|chrLG6:4494303-4494364(+)0.75PDF
n-a|chr21:44808624-44808757(-)osa-MIR5080|chr10:2321004-2321074(-)0.72PDF
n-a|chr19:42460219-42460278(+)mmu-mir-5127|chr18:81992012-81992072(-)0.75PDF
n-a|chr19:50083759-50083813(-)hsa-mir-676|chrX:69242714-69242771(+)0.75PDF
n-a|chrX:41916257-41916307(-)mmu-mir-5618|chr9:7784390-7784440(+)0.73PDF
n-a|chrX:41840981-41841013(-)hsa-mir-647|chr20:62574022-62574057(-)0.77PDF
n-a|chr20:49370222-49370274(+)osa-MIR5536|chr09:9139162-9139210(-)0.76PDF
n-a|chr11:46666077-46666124(+)tca-mir-3876|chrLG9:8557825-8557875(+)0.74PDF
n-a|chrX:47695976-47696097(-)hsa-mir-548ac|chr1:117102649-117102719(-)0.71PDF
n-a|chr1:44066138-44066197(+)crm-mir-237|Crem_Contig43:596121-596181(+)0.88PDF
RNAz     Sequence        CUUGGGACUGGGUCAUUCUGUUCCUCGCCAGUGGGAGAGCAGAUGGGGC_CUGGUCCCGAG
RNAz     Consensus SS    (((.((((..((((...((((((((((....)))).))))))....))).)..)))).)))
CMfinder Sequence        CUCAGGACUGGGUCAUUCUGUUCCUCGCCAGUGGGAGAGCAG-UGGGGCCUGGUCCC
CMfinder Consensus SS    ::::<<<<--<<<<---<<<<<<<<<<____>>>>->>>>>>---->>>>-->>>>:
n-a|chr19:50456304-50456333(-)hsa-mir-3199-2|chr22:28316514-28316544(+)0.78PDF
n-a|chr10:50035524-50035593(+)ath-MIR5024|chr1:16766279-16766341(-)0.83PDF
RNAz     Sequence        A_UGACACAGAGAGAGAGAC_G_AAGUAUGUUCACUUUC__UGUCUCUCUCUCUCUGUGUCAGUGUGCAUG
RNAz     Consensus SS    ...........................((((.((((.........................)))).)))).
CMfinder Sequence        ACUGACACAGAGAGAGAGACAGGAAUUAUGUUCACUUUCUGUCUCUCUCUCUCCGUGUCAGU
CMfinder Consensus SS    :<<<<<<<<<<<<<<<<<<<<<<<<<<______>>>>>>>>>>>>>>>>>>>-->>>>>>>:
n-a|chr19:39589840-39589874(+)osa-MIR171i|chr03:21190120-21190156(+)0.72PDF
n-a|chr22:46663670-46663703(-)bmo-mir-2808b|nscaf2964:1385681-1385711(+)0.76PDF
n-a|chr3:47530247-47530310(-)osa-MIR1428a|chr01:13159787-13159850(+)0.84PDF
RNAz     Sequence        AGCAUGGGUGACAAAGCAAGACUGUCUCAAAAAAAUAGGACAGCAUCUCACUGCAUCACCCAG
RNAz     Consensus SS    ....(((((((...((..(((((((((..........))))))..)))..))...))))))).
CMfinder Sequence        NA
CMfinder Consensus SS    NA
n-a|chr17:40729855-40729989(+)osa-MIR5514|chr02:22834339-22834382(+)0.83PDF
n-a|chr19:39408138-39408201(-)ppt-MIR1062|scaffold_49:1228164-1228226(-)0.84PDF
n-a|chr19:49999690-49999740(+)tca-mir-3876|chrLG9:8557825-8557875(+)0.72PDF
n-a|chr6:43445322-43445361(+)cqu-mir-133|supercont3.1189:55748-55784(+)0.74PDF
n-a|chr17:47253535-47253563(+)osa-MIR5162|chr12:16418640-16418668(+)0.77PDF
n-a|chr20:46205611-46205696(+)osa-MIR1428g|chr10:3960346-3960437(+)0.76PDF
n-a|chr8:41128583-41128643(-)mmu-mir-3078|chr14:64591200-64591261(+)0.79PDF
n-a|chr2:42319674-42319758(+)osa-MIR5538|chr10:21265771-21265854(+)0.75PDF
RNAz     Sequence        NA
RNAz     Consensus SS    NA
CMfinder Sequence        CAGUGGCCAAAGUACAAACAUUUGCCCUGGUUCUUUGAGUCUCAGGAAGUUGCACAGGAACCAGGGCAAAUGUUUGUACUC
CMfinder Consensus SS    ::::::::::<<<<<<<<<<<<<<<<<<<<<<<<<<<_______________>>->>>>>>>>>>>>>>>>>>>>>>>>>:
n-a|chr17:43011984-43012047(-)hsa-mir-1271|chr5:175794960-175795021(+)0.78PDF
n-a|chr1:37966535-37966594(-)hsa-mir-676|chrX:69242714-69242771(+)0.86PDF
n-a|chr1:45187859-45187915(+)tca-mir-3890|chrLG3:21939384-21939436(-)0.79PDF
n-a|chr12:40013570-40013614(-)ame-mir-3734|Group6.21:301078-301126(+)0.73PDF
n-a|chr20:49347260-49347294(-)osa-MIR1857|chr11:2729893-2729925(+)0.70PDF
n-a|chr8:50084692-50084759(+)mmu-mir-5621|chr11:115795824-115795886(+)0.73PDF
RNAz     Sequence        GCCUUAGCUUUCACUUCCGGCUUGUGCAAUGUCACAAGGUCAGCCAGAGGUGACAGCUUAGGACGUU
RNAz     Consensus SS    .(((.((((.(((((((.(((.((.((...........))))))).))))))).)))).))).....
CMfinder Sequence        CCUGAGCUUUCACUUCUGGCUUGUGCAGUGUCACAAGGUCAGCCAGAAGUGACAGCUUAGG
CMfinder Consensus SS    <<<<<<<<-<<<<<<<<<<<<<<<<______>>>>----->>>>>>>>>>>>->>>>>>>>
n-a|chr21:44839358-44839418(-)osa-MIR395v|chr09:6605582-6605641(-)0.84PDF
n-a|chrX:41202503-41202567(+)hsa-mir-500b|chrX:49775286-49775351(+)0.73PDF
n-a|chr6:38607155-38607228(+)hsa-mir-3199-1|chr22:28316522-28316598(-)0.77PDF
n-a|chr21:46796165-46796222(+)ame-mir-9b|Group15.33:20342-20400(-)0.71PDF
n-a|chr3:48521762-48521800(+)ath-MIR779|chr2:9560866-9560907(+)0.77PDF
n-a|chr22:41209894-41209951(-)bfl-mir-2068|Bf_V2_32:1589826-1589883(-)0.77PDF
RNAz     Sequence        CCUUCCAAAAGAGCAAUUGCUAUUUAGU__AAAAAAUAAACACCAACUGCUCUUUCAGA
RNAz     Consensus SS    ...((..((((((((.(((...((((..........))))...))).))))))))..))
CMfinder Sequence        AAAGAGCAAUUGCUAUUUAGUAAAAAAUAAACACCAACUGCUCUUU
CMfinder Consensus SS    :<<<<<<<-<<<---<<<<________>>>>--->>>->>>>>>>:
n-a|chr1:43637320-43637379(-)ppc-mir-2274|Ppa_Contig180:297859-297920(+)0.84PDF
n-a|chr14:62214607-62214686(+)hsa-mir-517c|chr19:54244567-54244644(+)0.80PDF
n-a|chr7:64298193-64298269(+)bmo-mir-2790|nscaf2865:1465803-1465878(-)0.76PDF
n-a|chr17:55064828-55064895(-)osa-MIR1861k|chr08:15129830-15129898(-)0.78PDF
n-a|chr7:57257232-57257289(-)tca-mir-3871|chrLG7:2957140-2957194(+)0.77PDF
n-a|chr15:52311759-52311809(-)osa-MIR5536|chr09:9139162-9139210(-)0.76PDF
n-a|chr16:64012786-64012860(-)osa-MIR169o|chr11:6077368-6077443(-)0.78PDF
n-a|chr12:53342901-53342964(+)mmu-mir-3065|chr11:120014780-120014842(+)0.77PDF
n-a|chr15:65067819-65067860(+)cbr-mir-87|chrV:6389737-6389778(+)0.70PDF
n-a|chr1:52082596-52082661(-)osa-MIR395r|chr04:32437703-32437768(+)0.77PDF
n-a|chr15:63282902-63282971(-)cel-mir-1830|II:4371842-4371911(-)0.79PDF
n-a|chr20:52051138-52051167(+)osa-MIR5162|chr12:16418640-16418668(+)0.86PDF
n-a|chr3:51534339-51534410(+)cbr-mir-80|chrIII:13406599-13406667(-)0.74PDF
n-a|chr13:57262632-57262703(+)osa-MIR1875|chr09:17566957-17567024(-)0.72PDF
n-a|chr20:56224498-56224561(-)hsa-mir-6511a-4|chr16:18437871-18437935(-)0.80PDF
n-a|chr14:54415144-54415203(-)hsa-mir-524|chr19:54214269-54214329(+)0.81PDF
n-a|chr18:61056538-61056577(-)osa-MIR812i|chr07:22151358-22151394(+)0.73PDF
n-a|chr11:61602155-61602189(-)bmo-mir-2775b|nscaf2883:1275550-1275585(-)0.72PDF
n-a|chr2:61133777-61133841(-)bmo-mir-3204b|nscaf1690:5500376-5500441(+)0.73PDF
n-a|chr19:54704725-54704767(+)ppt-MIR1030f|scaffold_435:112651-112693(-)0.72PDF
n-a|chr20:60890019-60890060(-)ame-mir-3763|GroupUn.1127:12726-12763(+)0.79PDF
n-a|chr12:52681822-52681923(-)hsa-mir-1273c|chr6:155174503-155174566(+)0.73PDF
n-a|chr2:64068991-64069086(+)osa-MIR5538|chr10:21265771-21265854(+)0.70PDF
n-a|chr19:58629078-58629148(+)cel-mir-1830|II:4371842-4371911(-)0.72PDF
n-a|chr16:55535713-55535738(-)bmo-mir-2813-2|nscaf2838:20617-20643(+)0.88PDF
n-a|chr20:52684956-52685013(-)bmo-mir-2796|nscaf2962:167783-167841(+)0.82PDF
n-a|chr5:56332278-56332312(+)hsa-mir-647|chr20:62574022-62574057(-)0.75PDF
n-a|chr3:51534123-51534177(+)bmo-mir-2777|nscaf2962:512226-512282(-)0.75PDF
n-a|chr22:51039592-51039629(-)ame-mir-3763|GroupUn.1127:12726-12763(+)0.80PDF
n-a|chr16:58534046-58534111(+)cel-mir-790|IV:5566418-5566481(+)0.71PDF
n-a|chr11:63393953-63394038(-)hsa-mir-548y|chr14:48230208-48230278(-)0.71PDF
n-a|chr20:57466445-57466502(+)bfl-mir-2068|Bf_V2_32:1589826-1589883(-)0.75PDF
n-a|chr18:60984347-60984407(-)hsa-mir-1913|chr6:166922853-166922912(-)0.71PDF
n-a|chr15:59063511-59063563(+)hsa-mir-4537|chr14:106325674-106325721(-)0.71PDF
n-a|chr11:60727973-60728006(-)ath-MIR3440b|chr3:6217557-6217588(+)0.70PDF
n-a|chr11:57529326-57529359(+)cre-MIR918|scaffold_6:1014348-1014380(+)0.75PDF
n-a|chr20:52465101-52465160(+)osa-MIR395v|chr09:6605582-6605641(-)0.88PDF
n-a|chr14:53417746-53417787(-)ath-MIR5656|chr1:1727361-1727408(+)0.73PDF
n-a|chr20:52369790-52369861(-)osa-MIR1861e|chr04:6532014-6532082(+)0.80PDF
n-a|chr22:50862786-50862867(+)osa-MIR5080|chr10:2321004-2321074(-)0.79PDF
n-a|chr1:63966759-63966831(-)spu-mir-2006|gb0.76PDF
n-a|chr14:60113680-60113739(-)cel-mir-800|X:380928-380988(-)0.81PDF
RNAz     Sequence        UUUAACCAGCUUGUCACUCUGUGCCCCAUUUAAAAAGCAUAUAGUAGCAAGCUGGAUAA
RNAz     Consensus SS    .(((((((((((((((((.(((((............))))).)))))))))))))))))
CMfinder Sequence        UAACCAGCUUGUCACUCUGUGCCCCAUUUAAAAAGCAUAUAGUAACAAGCUGGAUA
CMfinder Consensus SS    ::<<<<<<<<<<<<<<-<<<<<____________>>>>>->>>>>>>>>>>>>>::
n-a|chr2:61892496-61892558(+)ame-mir-3790|Group14.24:673069-673132(-)0.73PDF
n-a|chr19:57946692-57946729(+)osa-MIR5795|chr09:11102758-11102798(-)0.75PDF
n-a|chr3:63996227-63996271(-)cbr-mir-87|chrV:6389737-6389778(+)0.76PDF
n-a|chr11:60225112-60225224(-)bmo-mir-3372|scaffold10059:561-653(+)0.73PDF
n-a|chr17:60005474-60005510(+)ame-mir-3763|GroupUn.1127:12726-12763(+)0.74PDF
n-a|chr5:64357640-64357704(+)mmu-mir-3104|chr7:141992180-141992241(+)0.73PDF
n-a|chr17:59940789-59940823(-)osa-MIR1857|chr11:2729893-2729925(+)0.72PDF
n-a|chr15:64673553-64673653(-)ppt-MIR1055|scaffold_391:252837-252876(-)0.73PDF
n-a|chr10:54672475-54672542(+)cbr-mir-80|chrIII:13406599-13406667(-)0.76PDF
n-a|chr9:76365864-76365925(+)mmu-mir-5127|chr18:81992012-81992072(-)0.73PDF
n-a|chr1:76190439-76190523(+)bmo-mir-3001|nscaf2795:3132223-3132308(-)0.70PDF
n-a|chr7:75957248-75957311(-)dme-mir-4965|X:16500158-16500218(+)0.72PDF
n-a|chr10:80412119-80412143(+)ppt-MIR1048|scaffold_248:120191-120219(-)0.79PDF
n-a|chr12:72148441-72148505(-)cbr-mir-85|chrII:3615939-3616004(-)0.74PDF
n-a|chr11:75116673-75116732(+)mmu-mir-3076|chr14:30572149-30572208(+)0.73PDF
n-a|chrX:71492453-71492502(-)osa-MIR1846b|chr11:27244240-27244289(-)0.72PDF
n-a|chr2:75317959-75318022(+)mmu-mir-3085|chr19:42280096-42280160(-)0.76PDF
n-a|chr4:69006937-69006965(-)hsa-mir-4706|chr14:65511411-65511442(+)0.71PDF
n-a|chr17:65945730-65945769(-)osa-MIR812i|chr07:22151358-22151394(+)0.74PDF
n-a|chr7:82564994-82565034(-)ath-MIR831|chr2:10247369-10247411(+)0.71PDF
n-a|chr16:81855195-81855250(-)nve-mir-2027|scaffold_241:295192-295245(+)0.71PDF
n-a|chr5:79948127-79948188(+)hsa-mir-1271|chr5:175794960-175795021(+)0.72PDF
n-a|chr15:73076014-73076070(-)ame-mir-9b|Group15.33:20342-20400(-)0.81PDF
n-a|chr16:81705983-81706046(+)cbr-mir-85|chrII:3615939-3616004(-)0.81PDF
n-a|chr2:85173359-85173425(-)hsa-mir-758|chr14:101492369-101492429(+)0.71PDF
n-a|chr15:69747852-69747884(+)osa-MIR5158|chr08:23990883-23990919(+)0.74PDF
n-a|chr4:76895072-76895149(+)ath-MIR2939|chr5:19566986-19567060(+)0.73PDF
n-a|chr11:79133211-79133270(-)hsa-mir-3152|chr9:18573314-18573370(+)0.80PDF
n-a|chr2:70312371-70312435(+)osa-MIR319b|chr01:6676582-6676646(-)0.77PDF
n-a|chr13:76258914-76258974(+)bfl-mir-96|Bf_V2_186:1109818-1109878(+)0.82PDF
n-a|chr12:84544425-84544478(-)tca-mir-3876|chrLG9:8557825-8557875(+)0.80PDF
n-a|chr1:81817768-81817794(-)ppt-MIR1048|scaffold_248:120191-120219(-)0.79PDF
n-a|chr16:69563692-69563748(+)hsa-mir-1911|chrX:113997755-113997811(+)0.70PDF
n-a|chr2:72376257-72376327(+)cbr-mir-44|chrII:8049280-8049348(-)0.73PDF
n-a|chr12:75641983-75642010(+)hsa-mir-3162|chr11:59362555-59362583(-)0.77PDF
n-a|chr2:68614824-68614859(-)ath-MIR472|chr1:4182134-4182168(-)0.70PDF
n-a|chr9:77791691-77791724(-)osa-MIR167a|chr12:25443302-25443332(+)0.80PDF
n-a|chr2:70456225-70456289(-)ame-mir-92b-2|GroupUn.1203:2330-2390(+)0.71PDF
n-a|chr15:66548888-66548972(+)cre-MIR911|scaffold_7:773098-773178(-)0.79PDF
n-a|chr15:81243503-81243588(+)osa-MIR5538|chr10:21265771-21265854(+)0.77PDF
n-a|chr18:77985720-77985790(-)osa-MIR5075|chr11:7874360-7874425(-)0.72PDF
n-a|chr2:66585389-66585452(-)cte-mir-125|scaffold_135:290567-290628(+)0.76PDF
n-a|chr6:72117050-72117125(-)cel-mir-1830|II:4371842-4371911(-)0.77PDF
n-a|chr2:74153806-74153873(-)hsa-mir-1972-1|chr16:15104186-15104254(-)0.72PDF
n-a|chr13:72680222-72680269(-)bmo-mir-9d|nscaf2176:353056-353103(-)0.83PDF
n-a|chr2:77330289-77330318(+)ppt-MIR1048|scaffold_248:120191-120219(-)0.72PDF
n-a|chr11:84807690-84807757(-)cel-mir-1020|III:10047655-10047724(-)0.78PDF
n-a|chr2:71299407-71299448(+)osa-MIR5158|chr08:23990883-23990919(+)0.72PDF
n-a|chr2:83743125-83743187(+)cel-mir-4812|X:15242711-15242770(-)0.79PDF
n-a|chr12:75874533-75874673(+)osa-MIR2872|chr11:2521152-2521256(+)0.73PDF
n-a|chr17:73031733-73031782(+)tca-mir-3890|chrLG3:21939384-21939436(-)0.70PDF
n-a|chr17:79780680-79780734(-)mmu-mir-5125|chr17:23823303-23823359(+)0.82PDF
n-a|chr17:67095710-67095768(-)bmo-mir-2796|nscaf2962:167783-167841(+)0.81PDF
n-a|chr4:74125147-74125218(-)hsa-mir-6127|chr1:22959780-22959851(-)0.74PDF
n-a|chr1:70687264-70687342(+)ppt-MIR1037|scaffold_100:446986-447064(+)0.74PDF
n-a|chr14:69261939-69261970(-)bmo-mir-3264|nscaf3032:2071806-2071837(+)0.74PDF
n-a|chr13:83675126-83675165(-)bmo-mir-2855|nscaf2912:142836-142872(-)0.71PDF
n-a|chr16:81513507-81513544(+)hsa-mir-548aa-2|chr17:65467656-65467690(+)0.71PDF
n-a|chr4:95572111-95572150(+)osa-MIR1882g|chr11:20362607-20362645(+)0.77PDF
n-a|chr5:93955136-93955209(+)ppt-MIR1223e|scaffold_57:332579-332651(+)0.73PDF
n-a|chr12:104824834-104824896(+)mmu-mir-5616|chr4:149537863-149537922(+)0.74PDF
RNAz     Sequence        UGCUGCAAAGAGCUGCCCAAAACAAAUAUAUAUACUUGUUUUGGG
RNAz     Consensus SS    .(((......)))..((((((((((.((....)).))))))))))
CMfinder Sequence        NA
CMfinder Consensus SS    NA
n-a|chr1:85666853-85666889(+)bmo-mir-2775b|nscaf2883:1275550-1275585(-)0.72PDF
n-a|chr5:95591530-95591562(+)cre-MIR918|scaffold_6:1014348-1014380(+)0.71PDF
n-a|chr15:93443548-93443591(+)bmo-mir-2841|nscaf2828:3962841-3962887(-)0.70PDF
n-a|chr10:88509076-88509104(-)ath-MIR847|chr1:2165569-2165596(+)0.71PDF
n-a|chrX:91454956-91455036(+)osa-MIR395k|chr08:3298667-3298744(+)0.75PDF
n-a|chr1:95643149-95643178(-)hsa-mir-3198-1|chr22:18246994-18247023(-)0.80PDF
n-a|chr1:89357176-89357247(-)osa-MIR1881|chr12:5724937-5725005(+)0.75PDF
n-a|chr5:106773839-106773898(-)crm-mir-239a|Crem_Contig93:351760-351819(-)0.76PDF
n-a|chr12:104341650-104341690(+)osa-MIR5795|chr09:11102758-11102798(-)0.72PDF
n-a|chr15:97127816-97127881(+)cbr-mir-246|chrIV:5799938-5799999(-)0.80PDF
n-a|chr7:106809435-106809492(+)ppt-MIR893|scaffold_348:182953-183006(+)0.78PDF
n-a|chr5:99390218-99390299(+)ppt-MIR2081|scaffold_3:3507268-3507348(+)0.70PDF
n-a|chr15:88918863-88918930(+)bmo-mir-3204b|nscaf1690:5500376-5500441(+)0.71PDF
n-a|chr15:93375111-93375137(-)bmo-mir-2813-2|nscaf2838:20617-20643(+)0.76PDF
n-a|chr15:85697761-85697839(+)ppc-let-7|Ppa_Contig31:197585-197662(+)0.76PDF
RNAz     Sequence        UUUCCUAAUCACAUAUUGCUUCUGAAGUGUGGAAGGGGAAGCAAUGUGUGAUUA_GGAAAAGAAGUGGAAGGAAAUACC
RNAz     Consensus SS    ((((((((((((((((((((((...............))))))))))))))))).)))))...................
CMfinder Sequence        UUUCCUAAUCACAUAUUGCUUCUGAAGUGUGGAAGGGGAAGCAAUGUGUGAUUAGGAAAAGAAGUGG
CMfinder Consensus SS    <<<<<<<<<<<<<<<<<<<<<<<_____________>>>>>>>>>>>>>>>>>>>>>>>::::::::
n-a|chr12:104234957-104235034(-)bmo-mir-3385|scaffold772:8756-8831(+)0.71PDF
n-a|chr8:90898533-90898570(+)ath-MIR779|chr2:9560866-9560907(+)0.79PDF
n-a|chr6:90517806-90517831(-)bmo-mir-2813-2|nscaf2838:20617-20643(+)0.79PDF
n-a|chr3:100467748-100467808(+)osa-MIR5539|chr12:20520344-20520379(-)0.71PDF
n-a|chr11:85347516-85347545(+)bmo-mir-2813-2|nscaf2838:20617-20643(+)0.80PDF
n-a|chr10:88171434-88171475(+)osa-MIR5147|chr02:17044314-17044352(-)0.71PDF
n-a|chrX:107294695-107294726(-)osa-MIR1882g|chr11:20362607-20362645(+)0.73PDF
n-a|chr2:96754614-96754678(-)osa-MIR1879|chr10:5651860-5651927(+)0.76PDF
n-a|chr10:97888142-97888207(-)hsa-mir-519a-1|chr19:54255662-54255724(+)0.74PDF
RNAz     Sequence        GCUAACCAAUAUGUUCAAAACCUGAAAGGAGAUCAAGAGAAACCUUUCAGGUUUUGAACAU_AGAG
RNAz     Consensus SS    ..................................................................
CMfinder Sequence        UAUGUUCAAAACCUGAAAGGAGAUCAAGAGAAACCUUUCAGGUUUUGAACAUA
CMfinder Consensus SS    :<<<<<<<<<<<<<<<<<<<---<<____>>-->>>>>>>>>>>>>>>>>>>:
n-a|chr7:99020616-99020650(-)ath-MIR862|chr2:10718103-10718136(+)0.73PDF
n-a|chr10:104725551-104725606(+)hsa-mir-1909|chr19:1816173-1816230(-)0.74PDF
n-a|chr15:99327664-99327725(+)mmu-mir-3104|chr7:141992180-141992241(+)0.83PDF
n-a|chr4:99416917-99416987(-)cel-mir-1020|III:10047655-10047724(-)0.70PDF
n-a|chr16:85951957-85952023(+)osa-MIR1428a|chr01:13159787-13159850(+)0.74PDF
n-a|chr8:97370963-97371034(+)ppt-MIR1223e|scaffold_57:332579-332651(+)0.75PDF
n-a|chr11:85989376-85989440(+)cbr-mir-85|chrII:3615939-3616004(-)0.81PDF
n-a|chr16:89626882-89626947(-)osa-MIR319b|chr01:6676582-6676646(-)0.77PDF
n-a|chr14:106326531-106326592(-)cel-mir-4812|X:15242711-15242770(-)0.81PDF
RNAz     Sequence        AG____CUCAGCUCAGCUCA_____ACCCAGUUCA_____ACUCAG_________CCCAGUUCAGCUCAGCUCAGCCCA
RNAz     Consensus SS    .........((((.((((.............................................)))).)))).......
CMfinder Sequence        GUUCAACUCAGCCCAGUUCAGCUCAGCUCAGC
CMfinder Consensus SS    ::::::::::<<--<<_____>>-->>:::::
n-a|chr15:99440505-99440547(+)osa-MIR5795|chr09:11102758-11102798(-)0.73PDF
n-a|chr14:93214938-93214972(-)ppt-MIR1051|scaffold_56:1824653-1824690(+)0.70PDF
n-a|chr5:93903320-93903363(-)cre-MIR910|scaffold_17:966156-966199(+)0.72PDF
n-a|chr1:85599488-85599545(+)bfl-mir-2068|Bf_V2_32:1589826-1589883(-)0.83PDF
RNAz     Sequence        AGUUGCCUUUUUGUUCCCAUGCUGGUUAAGCCUAGCAUAGGCACCAAAAAGCAACAA
RNAz     Consensus SS    .(((((.((((.((.((.((((((........)))))).)).)).)))).)))))..
CMfinder Sequence        GUUGCCUUUUUGUUCCCAUGCUG-UUuAAGCCUAGCAUAGGCACCAAAAAGCAAC
CMfinder Consensus SS    <<<<<-<<<<<<--<<-<<<<<<<__.____>>>>>>>->>--->>>>>>>>>>>
n-a|chr13:93142395-93142473(+)hsa-mir-518c|chr19:54211992-54212072(+)0.71PDF
n-a|chr5:95223065-95223131(-)crm-mir-46|Crem_Contig12:1283924-1283990(-)0.74PDF
n-a|chr5:93855553-93855640(+)ppt-MIR166e|scaffold_36:478480-478566(-)0.70PDF
RNAz     Sequence        NA
RNAz     Consensus SS    NA
CMfinder Sequence        UGAGUAUAUGUGCUUAUAUAUAUGCGUAUAUUUAAUAAACAGAUAAAGGAGCUUAUAUGUGUAUAAGCAUAUAUACUCAUU
CMfinder Consensus SS    <<<<<<<<<<<<<<<<<<<<<<<--<<<_________________________>>>>>>>>>>>>>>>>>>>>>>>>>>::
n-a|chr12:109042144-109042210(-)mmu-mir-344f|chr7:62046181-62046248(-)0.75PDF
RNAz     Sequence        UGGCCACACUUGGCUCCUUUAAUGGGGCUAAAGGAGCUUUAACUCCGUUAAAGGAGGCAAGUGUGG
RNAz     Consensus SS    .....(((((((.((((((((((((((((.....)))))......))))))))))).)))))))..
CMfinder Sequence        UUGGCUCCUUUAAUGGGGCUAAAGGAGCUUUAA
CMfinder Consensus SS    ::<<<<<<<<<<_______>>>>>>>>>>::::
n-a|chr6:105046138-105046160(-)hsa-mir-4502|chr13:115039353-115039382(+)0.72PDF
n-a|chr8:99405892-99405955(-)hsa-mir-34b|chr11:111383673-111383736(+)0.76PDF
RNAz     Sequence        GCUCCCUAGUCUACUGGAGGAUAAGAGACCUUUAUAUCCUCUUAUCCUCCAGUAGGCUGGGGA
RNAz     Consensus SS    .....(((((((((((((((((((((.............)))))))))))))))))))))...
CMfinder Sequence        CCCUAGUCUACUGGAGGAUAAGAGACCUUUAUAUCCUCUUAUCCUCCAGUAGGCUGGGG
CMfinder Consensus SS    <<<<<<<<<<<<<<<<<<<<<<<<___________>>>>>>>>>>>>>>>>>>>>>>>>
n-a|chr7:92242649-92242715(-)bfl-mir-252b|Bf_V2_101:1038254-1038320(+)0.77PDF
n-a|chr1:98510826-98510886(-)ppc-mir-2274|Ppa_Contig180:297859-297920(+)0.74PDF
n-a|chrX:106938596-106938633(-)osa-MIR5147|chr02:17044314-17044352(-)0.74PDF
n-a|chr15:85923833-85923892(+)mmu-mir-3104|chr7:141992180-141992241(+)0.81PDF
n-a|chr3:98691200-98691321(+)bmo-mir-3384|nscaf1690:1480845-1480966(-)0.78PDF
n-a|chr10:102121546-102121617(+)hsa-mir-219-2|chr9:131154912-131154979(-)0.70PDF
RNAz     Sequence        AGAUGUCCAGCCACAAUUCUCGGUU_____GGCCGCAG__ACUCGUACAAGAAUUGCGUUUGGACAAUCAGU
RNAz     Consensus SS    .((((((((..(.(((((((((((.......))))..............))))))).)..))))).)))...
CMfinder Sequence        UGUCCAGCCACAAUUCUCGGUUGGCCGCAGACUCGUACAAGAAUUGCGUUUGGACAAUCAG
CMfinder Consensus SS    <<<<<<<---<<<<<<<-<<____>>------------->>>>>>>--->>>>>>>:::::
n-a|chr7:88657071-88657132(-)hsa-mir-3189|chr19:18497380-18497441(+)0.80PDF
n-a|chr12:104825438-104825498(+)osa-MIR5525|chr09:3903322-3903385(-)0.81PDF
n-a|chr13:97079481-97079549(+)osa-MIR5157a|chr08:21473455-21473524(-)0.78PDF
n-a|chr4:89996220-89996251(+)osa-MIR1857|chr11:2729893-2729925(+)0.72PDF
n-a|chr9:93909955-93909992(-)osa-MIR1428f|chr07:5450399-5450430(-)0.71PDF
n-a|chr10:103662351-103662421(-)osa-MIR398b|chr07:14597636-14597701(-)0.70PDF
RNAz     Sequence        AGAGCAAACAAAGAGCUGUGGUAGAAAGUGAUUUGCAACCUUACUUUCUACCACAGCUCUUUGUCUGCAA
RNAz     Consensus SS    ...(((.(((((.((((.(((..((((.(((.........))).))))..))).)))).))))).)))..
CMfinder Sequence        GCAAACAAAG.AGCUGUGGUAGAAAGUGAUUUGCAACCUUACUUUCUACCACAGCUC.UUUGUCUGC
CMfinder Consensus SS    <<<-<<<<<<.<<<<<<<<<<<<<<<<<<_________>>>>>>>>>>>>>>>>>>>.>>>>>->>>
n-a|chr6:120144252-120144312(+)mmu-mir-3098|chr6:125195807-125195867(+)0.82PDF
n-a|chr1:115268842-115268883(-)hsa-mir-636|chr17:74732541-74732583(-)0.72PDF
n-a|chr12:115479485-115479548(+)osa-MIR5075|chr11:7874360-7874425(-)0.82PDF
n-a|chr11:122022828-122022867(-)osa-MIR171i|chr03:21190120-21190156(+)0.76PDF
n-a|chrX:123530141-123530177(-)osa-MIR1431|chr01:4765491-4765525(-)0.77PDF
n-a|chr3:122692547-122692608(-)cel-mir-49|X:9989244-9989306(+)0.83PDF
n-a|chr4:111119730-111119771(-)cqu-mir-133|supercont3.1189:55748-55784(+)0.74PDF
n-a|chr8:124025697-124025735(-)cbr-mir-87|chrV:6389737-6389778(+)0.77PDF
n-a|chr5:134164846-134164893(+)ame-mir-3764|Group11.35:218239-218280(-)0.73PDF
n-a|chr3:120768497-120768552(+)bmo-mir-2796|nscaf2962:167783-167841(+)0.80PDF
RNAz     Sequence        CUUAUCCUGCAAGGUGCU_CAGAGA__AGGCCUGUAGCACCUUGCAGGAUAAGGC
RNAz     Consensus SS    ((((((((((((((((((((((.........))))))))))))))))))))))..
CMfinder Sequence        NA
CMfinder Consensus SS    NA
n-a|chr7:112090514-112090572(+)crm-mir-237|Crem_Contig43:596121-596181(+)0.75PDF
n-a|chr10:121718033-121718093(+)hsa-mir-544a|chr14:101515010-101515070(+)0.90PDF
n-a|chr11:126173840-126173907(-)mmu-mir-1264|chrX:147010614-147010679(+)0.76PDF
n-a|chr5:123095929-123096006(-)osa-MIR169o|chr11:6077368-6077443(-)0.70PDF
n-a|chr9:131154912-131154977(+)ppt-MIR1062|scaffold_49:1228164-1228226(-)0.85PDF
n-a|chr9:128509401-128509436(+)osa-MIR395l|chr08:3299060-3299093(+)0.73PDF
n-a|chr9:135996571-135996629(-)ame-mir-9b|Group15.33:20342-20400(-)0.74PDF
n-a|chr1:112962108-112962164(+)osa-MIR5504|chr10:17156969-17157026(-)0.75PDF
n-a|chr10:134753824-134753884(-)hsa-mir-105-1|chrX:151560703-151560762(-)0.76PDF
RNAz     Sequence        CUGUCAAGCUUGCACAAAACUGAUUUGAAUAGGAUAUGAAUCAGUUU_UGUGCAAGCUUAA
RNAz     Consensus SS    .....(((((((((((((((((((((...........)))))))))).)))))))))))..
CMfinder Sequence        CUGUCAAGCUUGCACAAAACUGAUUUGAAUAGGAUAUGAAUCAGUUUUGUGCAAGCUUA
CMfinder Consensus SS    :::::<<<<<<<<<<<<<<<<<<<<<___________>>>>>>>>>>>>>>>>>>>>>:
n-a|chr9:130743559-130743601(+)osa-MIR5795|chr09:11102758-11102798(-)0.73PDF
n-a|chr3:129035077-129035130(-)osa-MIR399e|chr01:30476623-30476675(-)0.77PDF
n-a|chr12:122240782-122240851(-)osa-MIR1861e|chr04:6532014-6532082(+)0.79PDF
n-a|chr12:111021055-111021093(-)osa-MIR2866|chr03:7330614-7330693(-)0.72PDF
n-a|chr2:113089281-113089309(-)bmo-mir-2808b|nscaf2964:1385681-1385711(+)0.85PDF
n-a|chr9:113826640-113826666(+)osa-MIR2871a|chr05:3877072-3877101(+)0.79PDF
n-a|chr4:119644632-119644661(-)osa-MIR5162|chr12:16418640-16418668(+)0.79PDF
n-a|chr7:126859163-126859235(-)ath-MIR2939|chr5:19566986-19567060(+)0.70PDF
n-a|chr12:120967999-120968033(+)bmo-mir-2775b|nscaf2883:1275550-1275585(-)0.77PDF
n-a|chr9:128230314-128230375(-)hsa-mir-487a|chr14:101518792-101518852(+)0.83PDF
n-a|chr12:132405752-132405780(+)hsa-mir-3199-2|chr22:28316514-28316544(+)0.77PDF
n-a|chr3:124953806-124953859(-)tca-mir-3876|chrLG9:8557825-8557875(+)0.74PDF
n-a|chr12:121312437-121312496(-)hsa-mir-450a-2|chrX:133674557-133674616(-)0.79PDF
RNAz     Sequence        ACAUGCCUUGCUUCCAAUAUGACAUCAAUAUUCCUGUCGAUGUCACAUUGGAAGCAGAG
RNAz     Consensus SS    .......(((((((((((.(((((((.(((....))).))))))).)))))))))))..
CMfinder Sequence        UUGCUUCCAAUAUGGCAUCAAUAUUCCUGUCGAUGUCACACUGGAAGCAG
CMfinder Consensus SS    <<<<<<<<<<<-<<<<<<<-<<<____>>>->>>>>>>->>>>>>>>>>>
n-a|chr3:122295158-122295227(+)bfl-mir-34c-1|Bf_V2_269:1088514-1088576(-)0.71PDF
n-a|chr7:138728844-138728904(-)mmu-mir-3078|chr14:64591200-64591261(+)0.77PDF
n-a|chr13:111367643-111367703(-)osa-MIR5540|chr01:35551694-35551761(-)0.70PDF
n-a|chr5:118691392-118691420(-)hsa-mir-4419b|chr12:128729079-128729111(+)0.72PDF
n-a|chr6:111611320-111611348(+)hsa-mir-3199-2|chr22:28316514-28316544(+)0.76PDF
n-a|chr11:122026903-122026967(-)osa-MIR1428a|chr01:13159787-13159850(+)0.80PDF
n-a|chr3:123303861-123303908(-)ath-MIR870|chr5:21395550-21395629(-)0.77PDF
n-a|chr3:125094236-125094305(+)osa-MIR1861k|chr08:15129830-15129898(-)0.77PDF
n-a|chr9:137700480-137700534(+)bfl-mir-2068|Bf_V2_32:1589826-1589883(-)0.84PDF
n-a|chr5:130547619-130547672(+)osa-MIR5514|chr02:22834339-22834382(+)0.82PDF
n-a|chr2:122758756-122758815(+)osa-MIR319b|chr01:6676582-6676646(-)0.77PDF
n-a|chrX:125864878-125864905(-)bmo-mir-2813-2|nscaf2838:20617-20643(+)0.73PDF
n-a|chr12:133443275-133443341(-)hsa-mir-516a-2|chr19:54264399-54264464(+)0.79PDF
n-a|chr1:113230668-113230722(+)mmu-mir-3091|chr2:180257545-180257601(+)0.76PDF
RNAz     Sequence        UGCCCCCAGACUGGGCUCAGUGUCCC__UCUGUGGCACUGAGCCCCUCU__GUGG____CCG
RNAz     Consensus SS    ............((((((((((((.........)))))))))).))................
CMfinder Sequence        GGGCUCAGUGUCCCUCUGUGGCACUGAGCCC
CMfinder Consensus SS    <<<<<<<<<<<<_______>>>>>>>>>>>>
n-a|chr8:122114324-122114350(-)osa-MIR396b|chr06:3668737-3668765(+)0.71PDF
n-a|chr12:121232074-121232110(-)osa-MIR5147|chr02:17044314-17044352(-)0.70PDF
n-a|chr12:109336038-109336090(+)tca-mir-3871|chrLG7:2957140-2957194(+)0.71PDF
n-a|chr1:121356566-121356602(-)hsa-mir-3184|chr17:28444113-28444149(-)0.73PDF
n-a|chr9:132175559-132175610(-)hsa-mir-548ak|chr10:12172759-12172815(-)0.71PDF
n-a|chr1:149909462-149909504(+)cbr-mir-87|chrV:6389737-6389778(+)0.74PDF
n-a|chr4:146483383-146483420(+)osa-MIR5340|chr02:5683422-5683456(-)0.71PDF
n-a|chr1:150336039-150336107(-)osa-MIR2875|chr08:27089356-27089426(+)0.75PDF
n-a|chrX:152716636-152716672(-)ath-MIR4240|chr4:10711573-10711607(-)0.75PDF
n-a|chr6:157733480-157733553(-)ath-MIR5645c|chr3:14742730-14742804(+)0.74PDF
n-a|chr7:139246315-139246356(-)osa-MIR5795|chr09:11102758-11102798(-)0.73PDF
n-a|chr5:176722871-176722908(+)ath-MIR163|chr1:24884066-24884102(+)0.71PDF
n-a|chr8:142318386-142318479(-)bmo-mir-3326|scaffold418:171282-171375(+)0.71PDF
n-a|chr5:150603589-150603653(-)bfl-mir-34c-1|Bf_V2_269:1088514-1088576(-)0.87PDF
n-a|chr9:139901976-139902038(-)crm-mir-237|Crem_Contig43:596121-596181(+)0.87PDF
n-a|chr6:143382674-143382714(-)bmo-mir-2855|nscaf2912:142836-142872(-)0.72PDF
n-a|chr5:140812434-140812489(+)hsa-mir-676|chrX:69242714-69242771(+)0.71PDF
n-a|chr3:160152672-160152740(+)osa-MIR395q|chr04:32437560-32437625(+)0.73PDF
n-a|chr1:153963237-153963298(+)hsa-mir-2116|chr15:59463392-59463452(-)0.72PDF
n-a|chr9:140024244-140024301(+)bmo-mir-2796|nscaf2962:167783-167841(+)0.83PDF
n-a|chr6:142334797-142334860(+)cbr-mir-85|chrII:3615939-3616004(-)0.73PDF
n-a|chr1:157042972-157043006(+)osa-MIR5158|chr08:23990883-23990919(+)0.77PDF
n-a|chr7:156401961-156402018(+)bmo-mir-2822-1|nscaf1690:3605487-3605539(-)0.73PDF
n-a|chr6:140971516-140971554(-)hsa-mir-3917|chr1:26232904-26232945(-)0.72PDF
n-a|chr8:144815258-144815314(-)hsa-mir-570|chr3:195426296-195426352(+)0.80PDF
n-a|chr1:160309851-160309887(-)osa-MIR812i|chr07:22151358-22151394(+)0.74PDF
n-a|chr6:159240334-159240371(-)osa-MIR5147|chr02:17044314-17044352(-)0.72PDF
n-a|chr1:171482117-171482295(+)mmu-mir-3063|chr11:95963298-95963372(-)0.77PDF
n-a|chr1:173833811-173833874(-)hsa-mir-494|chr14:101495985-101496042(+)0.71PDF
n-a|chr5:168342402-168342468(-)mmu-mir-5134|chr17:24234534-24234597(-)0.73PDF
n-a|chr8:141522201-141522238(+)ath-MIR5645f|chr5:14946892-14946931(-)0.75PDF
n-a|chrX:142525812-142525876(-)mmu-mir-344i|chr7:62085233-62085298(-)0.87PDF
n-a|chr2:140979213-140979272(-)osa-MIR5504|chr10:17156969-17157026(-)0.74PDF
n-a|chr1:162499238-162499390(+)ppt-MIR2084|scaffold_3:3110270-3110339(+)0.70PDF
n-a|chr5:142306556-142306626(+)spu-mir-153|gb0.86PDF
n-a|chr5:156944584-156944612(-)ppt-MIR1048|scaffold_248:120191-120219(-)0.77PDF
n-a|chr6:165285353-165285410(-)bfl-mir-33-2|Bf_V2_21:4947959-4948018(-)0.75PDF
n-a|chr1:150601525-150601562(-)osa-MIR5147|chr02:17044314-17044352(-)0.71PDF
n-a|chr8:146227266-146227324(-)hsa-mir-3152|chr9:18573314-18573370(+)0.87PDF
n-a|chr3:152181137-152181206(+)hsa-mir-3135a|chr3:20179066-20179133(+)0.78PDF
n-a|chr1:178646897-178646957(+)bfl-mir-34c-1|Bf_V2_269:1088514-1088576(-)0.85PDF
RNAz     Sequence        AGAGUUAACUUGAAAUGGACUAAUUUUUCCACUAGUUAGUCCAUUUCAAGUUAACUCUGU
RNAz     Consensus SS    (((((((((((((((((((((((((........)))))))))))))))))))))))))..
CMfinder Sequence        AGAGUUAACUCAAAAUGGACUAAUUUUUCCACUAGUUAGUCCAUUUCAAGUUAACUCU
CMfinder Consensus SS    :<<<<<<<<<-<<<<<<<<<<<<<<________>>>>>>>>>>>>>>->>>>>>>>>:
n-a|chr8:141475109-141475153(+)cre-MIR912|scaffold_35:929979-930022(-)0.83PDF
n-a|chr5:142562552-142562578(-)hsa-mir-3162|chr11:59362555-59362583(-)0.76PDF
n-a|chr6:142693754-142693820(+)hsa-mir-301a|chr17:57228507-57228573(-)0.75PDF
n-a|chr4:163191209-163191234(-)osa-MIR5162|chr12:16418640-16418668(+)0.76PDF
n-a|chr6:146864640-146864705(-)osa-MIR5075|chr11:7874360-7874425(-)0.84PDF
n-a|chr4:170997539-170997570(-)osa-MIR2871a|chr05:3877072-3877101(+)0.75PDF
n-a|chr8:143407876-143407943(-)osa-MIR5075|chr11:7874360-7874425(-)0.81PDF
n-a|chr1:161696591-161696742(-)osa-MIR1428e|chr03:23075359-23075459(+)0.70PDF
n-a|chr1:150849338-150849378(+)ath-MIR5645f|chr5:14946892-14946931(-)0.71PDF
n-a|chr6:142308570-142308638(-)hsa-mir-6511b-1|chr16:2156677-2156746(-)0.76PDF
n-a|chr1:152009419-152009450(-)hsa-mir-3162|chr11:59362555-59362583(-)0.73PDF
n-a|chr5:176980351-176980407(-)hsa-mir-518e|chr19:54233106-54233165(+)0.83PDF
n-a|chr3:169814904-169814976(-)tca-mir-3870|chrLG5:12805214-12805284(-)0.76PDF
n-a|chr1:178712689-178712748(+)hsa-mir-570|chr3:195426296-195426352(+)0.81PDF
RNAz     Sequence        UUGAUGUUGCCACGGAACUAAUUUAAGUU_AAAAAAAUUGGUUCUGUGGCAACAUCGAUA
RNAz     Consensus SS    ((((((((((((((((((((((((..........))))))))))))))))))))))))..
CMfinder Sequence        UUGAUGUUGCCAUGGAACUAAUUUAAGUUAAAAAAAUUAGUUCUGUGGCAACAUCGA
CMfinder Consensus SS    :<<<<<<<<<<<<<<<<<<<<<<<_________>>>>>>>>>>>>>>>>>>>>>>>:
n-a|chr3:149089580-149089648(-)hsa-mir-548t|chr4:174189315-174189382(+)0.73PDF
n-a|chr1:182991687-182991740(+)mmu-mir-5617|chrX:20863126-20863182(-)0.70PDF
n-a|chr2:197519667-197519742(-)osa-MIR169o|chr11:6077368-6077443(-)0.71PDF
n-a|chr2:242524376-242524404(-)bmo-mir-2808b|nscaf2964:1385681-1385711(+)0.82PDF
n-a|chr3:189900520-189900616(+)ath-MIR5648|chr1:11499446-11499563(+)0.71PDF
n-a|chr2:217001883-217001948(+)bfl-mir-124|Bf_V2_32:1879934-1879995(+)0.78PDF
n-a|chr3:187482291-187482342(+)bmo-mir-9d|nscaf2176:353056-353103(-)0.71PDF
n-a|chr2:191745546-191745612(+)hsa-mir-548y|chr14:48230208-48230278(-)0.73PDF
n-a|chr2:240273427-240273488(-)cbr-mir-246|chrIV:5799938-5799999(-)0.89PDF
n-a|chr2:189839174-189839234(+)hsa-mir-362|chrX:49773573-49773635(+)0.72PDF
RNAz     Sequence        UC__________CU_U___UUUGCACAAAGAGUCU_CAUGUCUGAUAUUUAGACAUGAUGAGCUUUGUGCAAA
RNAz     Consensus SS    ...................(((((((((((......(((((((((...))))))))).....)))))))))))
CMfinder Sequence        UUGCACAAAGAGUCUCAUGUCUGAUAUUUAGACAUGAUGAGCUUUGUGCAA
CMfinder Consensus SS    :<<<<<<<<<----<<<<<<<<<<___>>>>>>>>>>---->>>>>>>>>:
n-a|chr3:186288031-186288090(-)mmu-mir-3104|chr7:141992180-141992241(+)0.80PDF
n-a|chr1:224585930-224586015(-)ppt-MIR166e|scaffold_36:478480-478566(-)0.71PDF
n-a|chr2:219144848-219144910(-)cel-mir-355|II:11833495-11833556(-)0.85PDF
n-a|chr1:214673355-214673416(-)hsa-mir-518f|chr19:54203282-54203342(+)0.82PDF
RNAz     Sequence        AGAAUGAGAAAAUGUCACACAUUGUC__CAAAUGUCCACAAAUGUGUGACAUUUUCUCAUU
RNAz     Consensus SS    ..((((((((((((((...............................))))))))))))))
CMfinder Sequence        AUGAGAAAAUGUCACACAUUGUCCGCAAAUGUCCACAAAUGUGGGACAUUUUCUCAU
CMfinder Consensus SS    :<<<<<<<<<<<<<<<<<<___________________>>>>>>>>>>>>>>>>>>:
n-a|chr1:212782101-212782129(+)hsa-mir-4492|chr11:118781469-118781496(+)0.73PDF
n-a|chr2:187350979-187351053(+)hsa-mir-548al|chr11:74110291-74110367(+)0.74PDF
n-a|chr1:207217192-207217226(-)osa-MIR5340|chr02:5683422-5683456(-)0.70PDF
n-a|chr2:211421515-211421549(+)osa-MIR1854|chr08:7857379-7857408(-)0.71PDF
n-a|chr1:243509488-243509549(+)ppc-mir-2233|Ppa_Contig180:297988-298048(+)0.79PDF
RNAz     Sequence        AUUGUUCUUUGGUCUUUCAGCCAUGACCUGACCUUCUGUCUGUGAGACCAAAGAGCUACUU
RNAz     Consensus SS    ..........((((..(((....)))...))))............................
CMfinder Sequence        GUUCUUUGGUCUUUCAGCCAUGACCUGACCUUCUGUCUGUGAGACCAAAGAAC
CMfinder Consensus SS    <<<<<<<<<<<<<-<<<-<<-<<________>>>>->>>->>>>>>>>>>>>>
n-a|chr1:207103724-207103760(-)bmo-mir-2855|nscaf2912:142836-142872(-)0.78PDF
n-a|chr1:206907408-206907475(+)osa-MIR5157a|chr08:21473455-21473524(-)0.77PDF
n-a|chr1:229206971-229207031(+)osa-MIR5525|chr09:3903322-3903385(-)0.72PDF
n-a|chr2:211469887-211469970(+)ath-MIR870|chr5:21395550-21395629(-)0.75PDF
n-a|chr3:183523934-183524001(+)osa-MIR319b|chr01:6676582-6676646(-)0.80PDF
RNAz     Sequence        UAAGGCCAUCGUAAGUUGAAAAUAUCCUAAGUC_AAAAAUGAUAUUUUCAACUU_ACGAUGGGUUUUUC
RNAz     Consensus SS    .(((.(((((((((((((((((((((..............)))))))))))))).))))))).)))...
CMfinder Sequence        AUCGUAAGUUGAAAAUAUCCUAAGUCAAAAAUGAUAUUUUCAACUUACGAUGGGUUU
CMfinder Consensus SS    <<<<<<<<<<<<<<<<<<<_____________>>>>>>>>>>>>>>>>>>>::::::
n-a|chr1:193126395-193126457(+)hsa-mir-524|chr19:54214269-54214329(+)0.84PDF
RNAz     Sequence        G___CCUGUUCGUAAAUGUUAGUGCAUUAUUA___UACAUUGCACUAACAUUUAUGAACAG_CAG
RNAz     Consensus SS    .................................................................
CMfinder Sequence        CUGUUCGUAAAUGUUAGUGGAUUAUUACAUUACAUUGCACUAACGUUUAUGAACAG
CMfinder Consensus SS    <<<<<<<<<<<<<<<<<<<__________________>>>>>>>>>>>>>>>>>>>
n-a|chr2:190243472-190243512(+)ppt-MIR1051|scaffold_56:1824653-1824690(+)0.73PDF
n-a|chr1:243959581-243959637(-)cel-mir-1834|IV:6660451-6660508(-)0.89PDF
n-a|chr3:188358330-188358381(+)osa-MIR399e|chr01:30476623-30476675(-)0.73PDF
n-a|chr2:209136489-209136519(+)hsa-mir-3199-2|chr22:28316514-28316544(+)0.77PDF
n-a|chr1:244615161-244615191(-)osa-MIR5162|chr12:16418640-16418668(+)0.74PDF
n-a|chr1:235691696-235691720(+)bmo-mir-2813-2|nscaf2838:20617-20643(+)0.73PDF
n-a|chr2:225368484-225368519(-)osa-MIR5158|chr08:23990883-23990919(+)0.78PDF
n-a|chr1:202311302-202311339(+)hsa-mir-4706|chr14:65511411-65511442(+)0.73PDF
n-a|chr2:232227433-232227491(+)mmu-mir-3098|chr6:125195807-125195867(+)0.83PDF
n-a|chr2:233415201-233415255(-)bmo-mir-2777|nscaf2962:512226-512282(-)0.73PDF
n-a|chr2:217540033-217540164(-)osa-MIR5151|chr05:3661567-3661614(-)0.70PDF
n-a|chr1:186651060-186651097(-)osa-MIR812i|chr07:22151358-22151394(+)0.75PDF
n-a|chr3:185634914-185634987(-)osa-MIR395f|chr04:31619676-31619748(-)0.75PDF
n-a|chr17:20841720-20841781(+)hsa-mir-519b|chr19:54198478-54198538(+)0.82PDF
RNAz     Sequence        AUAAUAGUCUCCAACUCUGAUUGGUUAAGAUUGUGCAAUCAGAGAUGGAGAUUAUUAUCCA
RNAz     Consensus SS    (((((((((((((.(((((((((............))))))))).)))))))))))))...
CMfinder Sequence        CUCCAACUCUGAUUGGUUAAGAUUGUGCAAUCAGAGAUGGAA
CMfinder Consensus SS    <<<<<-<<<<<<<<<____________>>>>>>>>>->>>>>
n-a|chr9:20411156-20411223(-)osa-MIR398b|chr07:14597636-14597701(-)0.71PDF
n-a|chr17:20904488-20904598(-)bmo-mir-3295|scaffold10686:125-183(+)0.70PDF
n-a|chr16:19615419-19615472(-)nve-mir-2027|scaffold_241:295192-295245(+)0.79PDF
n-a|chr6:21997944-21998002(-)tca-mir-3876|chrLG9:8557825-8557875(+)0.70PDF
n-a|chr17:17399674-17399710(-)bmo-mir-2855|nscaf2912:142836-142872(-)0.71PDF
n-a|chrX:21520309-21520371(+)bmo-mir-993a|nscaf2853:2425130-2425192(+)0.81PDF
RNAz     Sequence        UACAGUAGGCACAGAAUCCCACUGUCAU__________UUUUUAUAAUAGUGGGAUUCUGUGCCUAUUGUA_G
RNAz     Consensus SS    .........................................................................
CMfinder Sequence        UACAGUAGGCACAGAAUCCCACUGCCAUUUUUUAUAAUAGUGGGAUUCUGUGCCUAUUGUA
CMfinder Consensus SS    :<<<<<<<<<<<<<<<<<<<<<<<<___________>>>>>>>>>>>>>>>>>>>>>>>>:
n-a|chr10:20700474-20700560(+)ppt-MIR1034|scaffold_202:211339-211420(-)0.70PDF
n-a|chr19:18794505-18794564(+)hsa-mir-522|chr19:54254479-54254539(+)0.74PDF
n-a|chr8:22465672-22465711(-)ame-mir-3763|GroupUn.1127:12726-12763(+)0.81PDF
n-a|chr2:15369889-15369920(+)osa-MIR439j|chr10:15738111-15738142(-)0.75PDF
n-a|chr22:18907218-18907245(-)osa-MIR5162|chr12:16418640-16418668(+)0.85PDF
n-a|chr12:21671602-21671660(+)bmo-mir-2796|nscaf2962:167783-167841(+)0.80PDF
n-a|chr2:21504972-21505057(-)ppt-MIR2084|scaffold_3:3110270-3110339(+)0.73PDF
n-a|chr6:16129316-16129346(+)osa-MIR164e|chr03:10541166-10541196(+)0.71PDF
n-a|chr18:22006292-22006375(-)bmo-mir-2807a-1|nscaf2990:99000-99075(-)0.71PDF
n-a|chr19:16435634-16435683(+)mmu-mir-374c|chrX:103573085-103573133(+)0.76PDF
n-a|chr2:20648572-20648618(+)bmo-mir-2849-2|nscaf2901:1007827-1007870(+)0.71PDF
n-a|chr2:24163214-24163287(-)ame-mir-87-1|Group13.15:479010-479081(-)0.72PDF
n-a|chr17:25805483-25805510(-)osa-MIR5162|chr12:16418640-16418668(+)0.80PDF
n-a|chr17:22028770-22028834(+)cel-mir-355|II:11833495-11833556(-)0.76PDF
n-a|chr17:19412018-19412066(+)bmo-mir-9d|nscaf2176:353056-353103(-)0.86PDF
n-a|chr6:21686029-21686089(+)hsa-mir-1913|chr6:166922853-166922912(-)0.88PDF
RNAz     Sequence        CACUCACCUCCUGCUCUGUGGCCUGUUAGGAAUCGGGCCACACAGCAGAGGGUGAGCAGC
RNAz     Consensus SS    ..(((((((.(((((.(((((((((........))))))))).))))).)))))))....
CMfinder Sequence        CUCACUUCCUGUUCUGUGGCCUGUUAGGAAUCGGGCCACACAGCAGAGGGUGAG
CMfinder Consensus SS    <<<<<<--<<<<<<<<<<<<<<<________>>>>>>>>>>>>>>>-->>>>>>
n-a|chrX:24096463-24096525(+)mmu-mir-3104|chr7:141992180-141992241(+)0.83PDF
n-a|chr4:21466321-21466382(-)hsa-mir-664b|chrX:153996871-153996931(+)0.82PDF
n-a|chr16:15024681-15024737(+)hsa-mir-3130-2|chr2:207647967-207648022(+)0.75PDF
n-a|chr9:16705053-16705101(-)ath-MIR5656|chr1:1727361-1727408(+)0.77PDF
n-a|chrX:20081146-20081183(-)ppt-MIR1051|scaffold_56:1824653-1824690(+)0.76PDF
n-a|chr5:17353808-17353872(-)ppt-MIR166i|scaffold_127:459143-459211(+)0.75PDF
n-a|chr16:16423166-16423222(+)hsa-mir-3130-2|chr2:207647967-207648022(+)0.75PDF
n-a|chrX:15510171-15510230(-)cbr-mir-51|chrIV:5734749-5734809(+)0.89PDF
RNAz     Sequence        CAUCUGUCAGCCUCACUGGUAGCACCCAUGAGGUAGUUGCUACCAAUGAGGCUGACAGA
RNAz     Consensus SS    ..(((((((((((...((.(((((.((....))....))))).))...)))))))))))
CMfinder Sequence        CUGUCAGCCUCACUGGUAGCACCCAUGAGGUAGUUGCUACCAAUGAGGCUGACAG
CMfinder Consensus SS    <<<<<<<<<<<<-<<<<<<<<-<<____>>---->>>>>>>>->>>>>>>>>>>>
n-a|chr20:17946512-17946548(+)hsa-mir-548ac|chr1:117102649-117102719(-)0.73PDF
n-a|chr5:17156037-17156102(-)hsa-mir-616|chr12:57912958-57913023(-)0.74PDF
n-a|chr7:26231465-26231505(-)ath-MIR831|chr2:10247369-10247411(+)0.72PDF
n-a|chr5:17304667-17304736(-)mmu-mir-669j|chr2:10477940-10478010(+)0.70PDF
RNAz     Sequence        GAACGGUGUGCAUGAAAAUUCCAG_CAUAAAGACAGAAACAUAACUGGAA_UUUCAUGCACACCGUUCUGA
RNAz     Consensus SS    (((((((((((((((((.((((((....................)))))).)))))))))))))))))...
CMfinder Sequence        CGGUGUGCAUGAAAAUUCCAGCAUAAAGACAGAAACAUAACUGGAA-UUUCAUGCACACUGUU
CMfinder Consensus SS    <<<<<<<<<<<<<<<<<<<<<___________________>>>>>>>>>>>>>>>>>>>>>::
n-a|chr14:24563362-24563418(+)ame-mir-9b|Group15.33:20342-20400(-)0.77PDF
n-a|chr20:17950661-17950695(+)bmo-mir-2775b|nscaf2883:1275550-1275585(-)0.79PDF
n-a|chr12:14935725-14935777(-)bmo-mir-2822-1|nscaf1690:3605487-3605539(-)0.73PDF
n-a|chr16:18473206-18473262(-)hsa-mir-3130-2|chr2:207647967-207648022(+)0.75PDF
n-a|chr7:14665920-14665980(-)bfl-mir-124|Bf_V2_32:1879934-1879995(+)0.79PDF
n-a|chr6:24650873-24650929(-)bmo-mir-2b|nscaf1690:7673859-7673918(-)0.73PDF
n-a|chr8:18067633-18067671(+)ppt-MIR1030f|scaffold_435:112787-112823(-)0.73PDF
n-a|chr9:21536235-21536291(-)ppt-MIR1055|scaffold_391:252837-252876(-)0.70PDF
n-a|chr15:25278804-25278926(+)bmo-mir-3384|nscaf1690:1480845-1480966(-)0.80PDF
n-a|chr17:16875399-16875428(-)bmo-mir-2813-2|nscaf2838:20617-20643(+)0.76PDF
n-a|chr1:23636298-23636366(-)cel-mir-355|II:11833495-11833556(-)0.70PDF
n-a|chr11:15997795-15997839(+)bmo-mir-9d|nscaf2176:353056-353103(-)0.73PDF
n-a|chr16:22432237-22432265(-)osa-MIR2872|chr11:2520915-2520944(+)0.75PDF