Genome-wide identification of clusters of microRNA binding sites as microRNA sponge candidates



Searching for miRNA sponge candidates predicted by our pipeline
microRNA name:
(example: #1)

Selected miRNA sponge candidates


For a visualization of accessibility, binding sites energy, and conservation profiles of the sponge candidate, please click its coordinates to view it in the UCSC genome browser.

For further information about the individual sponge candidates, please click ‘details...’

miRNA Cluster
size
Cutoff [?] Accessibility and target profiles
(UCSC genome browser) [?]
Annotation SDR [?] More detail
hsa-miR-7-5p7620chrX:139865250-139866947(+)circRNA:hsa_circ_0001946 0.791details...
hsa-miR-43105426chr22:50671491-50673762(-)protein_coding:TUBGCP6 0.000details...
hsa-miR-376b-5p3818chr15:101093988-101095732(-)pseudogene:PRKXP1 0.000details...
hsa-miR-766-5p7051chrX:139865341-139867009(+)circRNA:hsa_circ_0001946 1.363details...
hsa-miR-42953517chr16:690762-691826(-)pseudogene:AL022341.1 0.000details...
hsa-miR-47294427chr16:90060979-90062561(+)circRNA:hsa_circ_0041137 0.460details...
hsa-miR-190b3821chr17:412328-413728(+)antisense:RP5-1029F21.31.100details...
hsa-miR-93-3p6146chr16:90060884-90062555(+)circRNA:hsa_circ_0041137 0.764details...
hsa-miR-80775238chr17:80211257-80213687(-)circRNA:hsa_circ_0046395 0.000details...
hsa-miR-545-3p3218chr10:133771747-133773035(+)protein_coding:PPP2R2D0.574details...
hsa-miR-4712-3p3824chr12:50745528-50747302(-)protein_coding:FAM186A0.000details...
hsa-miR-433-5p4430chr16:600512-601669(-)antisense:LA16c-366D1.30.000details...
hsa-miR-6493018chr8:142262432-142264762(-)circRNA:hsa_circ_00018290.000details...
hsa-miR-219b-5p3827chr22:21537410-21538848(+)processed_transcript:FAM230B1.329details...
hsa-miR-6761-5p4939chr14:107147088-107148903(-)circRNA:hsa_circ_00339970.000details...
hsa-miR-6492818chr9:139996161-139997435(+)circRNA:hsa_circ_00896350.541details...
hsa-miR-4668-3p2717chrX:139865277-139866621(-)protein_coding:CDR10.000details...
hsa-miR-5692b2010chr3:195607265-195609187(-)circRNA:hsa_circ_00013770.000details...
hsa-miR-34a-3p3121chr10:133770676-133771926(+)protein_coding:PPP2R2D0.733details...

All predicted sponge candidates


Download all 3673 predicted sponge candidates.