Genome-wide identification of clusters of microRNA binding sites as microRNA sponge candidates



Searching for miRNA sponge candidates predicted by our pipeline has been disabled

Selected miRNA sponge candidates


For a visualization of accessibility, binding sites energy, and conservation profiles of the sponge candidate, please click its coordinates to view it in the UCSC genome browser.

miRNA Cluster
size
Cutoff [?] Accessibility and target profiles
(UCSC genome browser) [?]
Annotation SDR [?] More detail
hsa-miR-7-5p7620chrX:139865250-139866947(+)circRNA:hsa_circ_0001946 0.791
hsa-miR-43105426chr22:50671491-50673762(-)protein_coding:TUBGCP6 0.000
hsa-miR-376b-5p3818chr15:101093988-101095732(-)pseudogene:PRKXP1 0.000
hsa-miR-766-5p7051chrX:139865341-139867009(+)circRNA:hsa_circ_0001946 1.363
hsa-miR-42953517chr16:690762-691826(-)pseudogene:AL022341.1 0.000
hsa-miR-47294427chr16:90060979-90062561(+)circRNA:hsa_circ_0041137 0.460
hsa-miR-190b3821chr17:412328-413728(+)antisense:RP5-1029F21.31.100
hsa-miR-93-3p6146chr16:90060884-90062555(+)circRNA:hsa_circ_0041137 0.764
hsa-miR-80775238chr17:80211257-80213687(-)circRNA:hsa_circ_0046395 0.000
hsa-miR-545-3p3218chr10:133771747-133773035(+)protein_coding:PPP2R2D0.574
hsa-miR-4712-3p3824chr12:50745528-50747302(-)protein_coding:FAM186A0.000
hsa-miR-433-5p4430chr16:600512-601669(-)antisense:LA16c-366D1.30.000
hsa-miR-6493018chr8:142262432-142264762(-)circRNA:hsa_circ_00018290.000
hsa-miR-219b-5p3827chr22:21537410-21538848(+)processed_transcript:FAM230B1.329
hsa-miR-6761-5p4939chr14:107147088-107148903(-)circRNA:hsa_circ_00339970.000
hsa-miR-6492818chr9:139996161-139997435(+)circRNA:hsa_circ_00896350.541
hsa-miR-4668-3p2717chrX:139865277-139866621(-)protein_coding:CDR10.000
hsa-miR-5692b2010chr3:195607265-195609187(-)circRNA:hsa_circ_00013770.000
hsa-miR-34a-3p3121chr10:133770676-133771926(+)protein_coding:PPP2R2D0.733

All predicted sponge candidates


Download all 3673 predicted sponge candidates.