Genome-wide identification of clusters of microRNA binding sites as microRNA sponge candidates
Searching for miRNA sponge candidates predicted by our pipeline
Selected miRNA sponge candidates
For a visualization of accessibility, binding sites energy, and conservation profiles of the sponge candidate, please click its coordinates to view it in the UCSC genome browser.
For further information about the individual sponge candidates, please click ‘details...’
| miRNA | Cluster size |
Cutoff [?] | Accessibility and target profiles (UCSC genome browser) [?] |
Annotation | SDR [?] | More detail |
|---|---|---|---|---|---|---|
| hsa-miR-7-5p | 76 | 20 | chrX:139865250-139866947(+) | circRNA:hsa_circ_0001946 | 0.791 | details... |
| hsa-miR-4310 | 54 | 26 | chr22:50671491-50673762(-) | protein_coding:TUBGCP6 | 0.000 | details... |
| hsa-miR-376b-5p | 38 | 18 | chr15:101093988-101095732(-) | pseudogene:PRKXP1 | 0.000 | details... |
| hsa-miR-766-5p | 70 | 51 | chrX:139865341-139867009(+) | circRNA:hsa_circ_0001946 | 1.363 | details... |
| hsa-miR-4295 | 35 | 17 | chr16:690762-691826(-) | pseudogene:AL022341.1 | 0.000 | details... |
| hsa-miR-4729 | 44 | 27 | chr16:90060979-90062561(+) | circRNA:hsa_circ_0041137 | 0.460 | details... |
| hsa-miR-190b | 38 | 21 | chr17:412328-413728(+) | antisense:RP5-1029F21.3 | 1.100 | details... |
| hsa-miR-93-3p | 61 | 46 | chr16:90060884-90062555(+) | circRNA:hsa_circ_0041137 | 0.764 | details... |
| hsa-miR-8077 | 52 | 38 | chr17:80211257-80213687(-) | circRNA:hsa_circ_0046395 | 0.000 | details... |
| hsa-miR-545-3p | 32 | 18 | chr10:133771747-133773035(+) | protein_coding:PPP2R2D | 0.574 | details... |
| hsa-miR-4712-3p | 38 | 24 | chr12:50745528-50747302(-) | protein_coding:FAM186A | 0.000 | details... |
| hsa-miR-433-5p | 44 | 30 | chr16:600512-601669(-) | antisense:LA16c-366D1.3 | 0.000 | details... |
| hsa-miR-649 | 30 | 18 | chr8:142262432-142264762(-) | circRNA:hsa_circ_0001829 | 0.000 | details... |
| hsa-miR-219b-5p | 38 | 27 | chr22:21537410-21538848(+) | processed_transcript:FAM230B | 1.329 | details... |
| hsa-miR-6761-5p | 49 | 39 | chr14:107147088-107148903(-) | circRNA:hsa_circ_0033997 | 0.000 | details... |
| hsa-miR-649 | 28 | 18 | chr9:139996161-139997435(+) | circRNA:hsa_circ_0089635 | 0.541 | details... |
| hsa-miR-4668-3p | 27 | 17 | chrX:139865277-139866621(-) | protein_coding:CDR1 | 0.000 | details... |
| hsa-miR-5692b | 20 | 10 | chr3:195607265-195609187(-) | circRNA:hsa_circ_0001377 | 0.000 | details... |
| hsa-miR-34a-3p | 31 | 21 | chr10:133770676-133771926(+) | protein_coding:PPP2R2D | 0.733 | details... |
All predicted sponge candidates
Download all 3673 predicted sponge candidates.