Genome-wide identification of clusters of microRNA binding sites as microRNA sponge candidates
Searching for miRNA sponge candidates predicted by our pipeline has been disabled
Selected miRNA sponge candidates
For a visualization of accessibility, binding sites energy, and conservation profiles of the sponge candidate, please click its coordinates to view it in the UCSC genome browser.
| miRNA | Cluster size |
Cutoff [?] | Accessibility and target profiles (UCSC genome browser) [?] |
Annotation | SDR [?] | More detail |
|---|---|---|---|---|---|---|
| hsa-miR-7-5p | 76 | 20 | chrX:139865250-139866947(+) | circRNA:hsa_circ_0001946 | 0.791 | |
| hsa-miR-4310 | 54 | 26 | chr22:50671491-50673762(-) | protein_coding:TUBGCP6 | 0.000 | |
| hsa-miR-376b-5p | 38 | 18 | chr15:101093988-101095732(-) | pseudogene:PRKXP1 | 0.000 | |
| hsa-miR-766-5p | 70 | 51 | chrX:139865341-139867009(+) | circRNA:hsa_circ_0001946 | 1.363 | |
| hsa-miR-4295 | 35 | 17 | chr16:690762-691826(-) | pseudogene:AL022341.1 | 0.000 | |
| hsa-miR-4729 | 44 | 27 | chr16:90060979-90062561(+) | circRNA:hsa_circ_0041137 | 0.460 | |
| hsa-miR-190b | 38 | 21 | chr17:412328-413728(+) | antisense:RP5-1029F21.3 | 1.100 | |
| hsa-miR-93-3p | 61 | 46 | chr16:90060884-90062555(+) | circRNA:hsa_circ_0041137 | 0.764 | |
| hsa-miR-8077 | 52 | 38 | chr17:80211257-80213687(-) | circRNA:hsa_circ_0046395 | 0.000 | |
| hsa-miR-545-3p | 32 | 18 | chr10:133771747-133773035(+) | protein_coding:PPP2R2D | 0.574 | |
| hsa-miR-4712-3p | 38 | 24 | chr12:50745528-50747302(-) | protein_coding:FAM186A | 0.000 | |
| hsa-miR-433-5p | 44 | 30 | chr16:600512-601669(-) | antisense:LA16c-366D1.3 | 0.000 | |
| hsa-miR-649 | 30 | 18 | chr8:142262432-142264762(-) | circRNA:hsa_circ_0001829 | 0.000 | |
| hsa-miR-219b-5p | 38 | 27 | chr22:21537410-21538848(+) | processed_transcript:FAM230B | 1.329 | |
| hsa-miR-6761-5p | 49 | 39 | chr14:107147088-107148903(-) | circRNA:hsa_circ_0033997 | 0.000 | |
| hsa-miR-649 | 28 | 18 | chr9:139996161-139997435(+) | circRNA:hsa_circ_0089635 | 0.541 | |
| hsa-miR-4668-3p | 27 | 17 | chrX:139865277-139866621(-) | protein_coding:CDR1 | 0.000 | |
| hsa-miR-5692b | 20 | 10 | chr3:195607265-195609187(-) | circRNA:hsa_circ_0001377 | 0.000 | |
| hsa-miR-34a-3p | 31 | 21 | chr10:133770676-133771926(+) | protein_coding:PPP2R2D | 0.733 |
All predicted sponge candidates
Download all 3673 predicted sponge candidates.