SARSE

A graphical sequence editor for working with structural alignments of RNA.

The software is now available: Version 1.37 (2007-10-25)
Complete package: sarse-1.37.tar.gz

Citation

For usage of the editor please cite:

Semiautomated improvement of RNA alignments E. S. Andersen, A. Lind-Thomsen, B. Knudsen, S. E. Kristensen, J. H. Havgaard, E. Torarinsson, N. Larsen, C. Zwieb, P. Sestoft, J. Kjems and J. Gorodkin, RNA 13:1850-1859, 2007.

Features

• Basic alignment editing.
• Split view.
• Unlimited undo/redo across sessions.
• Embedded alignment analysis tools e.g. RNAdbtools, pfold, pcluster.
• Extendable with your own commandline tools.
• Interactive overview function.
• Support for fasta, wide-text and column formats.