This page contains an overview of webservers, software and databases in relation to publications.
|NEW: RIsearch2 (resource), and RAIN: RNA-protein Association and Interaction Networks (resource).|
Searching RNA-protien interactions in STRING integrated framework
Foldalign 2.5: Parallel version for Foldalign for structural alignment of RNA sequences
Compare RNA-seq data to a database of pre-compiled miRNA RNA-seq profiles
Integrated framework with PETfold to fold and search for RNA-RNA interactions between two multiple alignments of RNA sequences.
Phylogenetic, Evolutionary and Thermodynamic folding of a multiple alignment of RNA sequences. Improved version 2.0 now available resulting in a significant speed improvement
Differential and coherent processing: Analyzing RNAseq data for pattern differences from different samples
Databases / data resources
miRNA-Disease associations inferred from Protein-dicease associations
Annotation of structured RNAs in the pig genome by sequence, structrure homology, RNAseq data and de novo predictions
Supplementary data for the paper A study of alternative splicing in the pig
Pairwise local and global structural alignment of RNA sequences.
Visualize the information content of DNA and RNA sequence and structure alignment.
Supplementary material for the paper The tedious task of finding homologous noncoding RNA genes.
CMfinder predicted conserved RNA structures in the ENCODE regions using RNA structure constraints.
Porcine EST assembly, expression and SNP data.
Predicted conserved RNA structures in corresponding region between human and mouse unalignable in primary sequence.
Signal recognition particle database (local mirror). Includes structural alignment of the SRP RNA sequences.