Rfam

[-]RF00001: 5S_rRNA (rRNA)

rrnA-5S (BSGatlas-gene-43)rrnB-5S (BSGatlas-gene-3636)rrnD-5S (BSGatlas-gene-1050)rrnE-5S (BSGatlas-gene-724)rrnG-5S (BSGatlas-gene-220)rrnH-5S (BSGatlas-gene-217)rrnI-5S (BSGatlas-gene-208)
rrnJ-5S (BSGatlas-gene-112)rrnO-5S (BSGatlas-gene-16)rrnW-5S (BSGatlas-gene-124)

[-]RF00005: tRNA (tRNA)

trnA-Ala (BSGatlas-gene-40)trnA-Ile (BSGatlas-gene-39)trnB-Ala (BSGatlas-gene-3627)trnB-Arg (BSGatlas-gene-3629)trnB-Asn (BSGatlas-gene-3617)trnB-Asp (BSGatlas-gene-3622)trnB-Glu (BSGatlas-gene-3615)
trnB-Gly1 (BSGatlas-gene-3631)trnB-Gly2 (BSGatlas-gene-3619)trnB-His (BSGatlas-gene-3620)trnB-Ile2 (BSGatlas-gene-3618)trnB-Leu1 (BSGatlas-gene-3632)trnB-Leu2 (BSGatlas-gene-3630)trnB-Lys (BSGatlas-gene-3633)
trnB-Met1 (BSGatlas-gene-3626)trnB-Met2 (BSGatlas-gene-3623)trnB-Met3 (BSGatlas-gene-3625)trnB-Phe (BSGatlas-gene-3621)trnB-Pro (BSGatlas-gene-3628)trnB-Ser1 (BSGatlas-gene-3624)trnB-Ser2 (BSGatlas-gene-3616)
trnB-Thr (BSGatlas-gene-3634)trnB-Val (BSGatlas-gene-3635)trnD-Asn (BSGatlas-gene-1051)trnD-Asp (BSGatlas-gene-1056)trnD-Cys (BSGatlas-gene-1064)trnD-Gln (BSGatlas-gene-1062)trnD-Glu (BSGatlas-gene-1053)
trnD-Gly (BSGatlas-gene-1063)trnD-His (BSGatlas-gene-1061)trnD-Leu1 (BSGatlas-gene-1065)trnD-Leu2 (BSGatlas-gene-1066)trnD-Met (BSGatlas-gene-1055)trnD-Phe (BSGatlas-gene-1057)trnD-Ser (BSGatlas-gene-1052)
trnD-Thr (BSGatlas-gene-1058)trnD-Trp (BSGatlas-gene-1060)trnD-Tyr (BSGatlas-gene-1059)trnD-Val (BSGatlas-gene-1054)trnE-Arg (BSGatlas-gene-719)trnE-Asp (BSGatlas-gene-726)trnE-Gly (BSGatlas-gene-720)
trnE-Met (BSGatlas-gene-725)trnI-Ala (BSGatlas-gene-214)trnI-Arg (BSGatlas-gene-212)trnI-Asn (BSGatlas-gene-209)trnI-Gly (BSGatlas-gene-211)trnI-Pro (BSGatlas-gene-213)trnI-Thr (BSGatlas-gene-210)
trnJ-Ala (BSGatlas-gene-121)trnJ-Arg (BSGatlas-gene-119)trnJ-Gly (BSGatlas-gene-117)trnJ-Leu1 (BSGatlas-gene-116)trnJ-Leu2 (BSGatlas-gene-118)trnJ-Lys (BSGatlas-gene-115)trnJ-Pro (BSGatlas-gene-120)
trnJ-Thr (BSGatlas-gene-114)trnJ-Val (BSGatlas-gene-113)trnO-Ala (BSGatlas-gene-14)trnO-Ile (BSGatlas-gene-13)trnQ-Arg (BSGatlas-gene-4037)trnS-Asn (BSGatlas-gene-583)trnS-Gln (BSGatlas-gene-586)
trnS-Glu (BSGatlas-gene-585)trnS-Leu1 (BSGatlas-gene-588)trnS-Leu2 (BSGatlas-gene-589)trnS-Lys (BSGatlas-gene-587)trnS-Ser (BSGatlas-gene-584)trnSL-Ala1 (BSGatlas-gene-3659)trnSL-Arg1 (BSGatlas-gene-2162)
trnSL-Arg2 (BSGatlas-gene-3326)trnSL-Gln1 (BSGatlas-gene-2902)trnSL-Gln2 (BSGatlas-gene-240)trnSL-Glu1 (BSGatlas-gene-88)trnSL-Glu2 (BSGatlas-gene-236)trnSL-Gly1 (BSGatlas-gene-1085)trnSL-Met1 (BSGatlas-gene-87)
trnSL-Ser1 (BSGatlas-gene-26)trnSL-Thr1 (BSGatlas-gene-238)trnSL-Tyr1 (BSGatlas-gene-239)trnSL-Val1 (BSGatlas-gene-237)trnSL-Val2 (BSGatlas-gene-1419)trnY-Asp (BSGatlas-gene-4693)trnY-Glu (BSGatlas-gene-4694)
trnY-Lys (BSGatlas-gene-4695)trnY-Phe (BSGatlas-gene-4692)

[-]RF00011: RNaseP_bact_b (ribozyme)

rnpB (BSGatlas-gene-2612)

[-]RF00013: 6S (sRNA)

bsrA (BSGatlas-gene-3234)bsrB (BSGatlas-gene-2270)

[-]RF00023: tmRNA (tmRNA)

ssrA (BSGatlas-gene-3937)

[-]RF00028: Intron_gpI (intron)

Intron-gpI (BSGatlas-gene-2365)srdEi (BSGatlas-gene-2368)srdFi (BSGatlas-gene-2363)

[-]RF00039: DicF (asRNA)

DicF (BSGatlas-gene-2850)

[-]RF00050: FMN (riboswitch)

FMN_fswA (BSGatlas-gene-2735)fswB (BSGatlas-gene-2710)

[-]RF00059: TPP (riboswitch)

Thi-box (BSGatlas-gene-1071)TPP_tswA (BSGatlas-gene-1387)TPP_tswB (BSGatlas-gene-1574)TPP_tswC (BSGatlas-gene-3640)TPP_tswE (BSGatlas-gene-1815)

[-]RF00080: yybP-ykoY (riboswitch)

mnrW (BSGatlas-gene-1595)

[-]RF00162: SAM (riboswitch)

mswI (BSGatlas-gene-4526)mswJ (BSGatlas-gene-4529)SAM_mswA (BSGatlas-gene-1414)SAM_mswB (BSGatlas-gene-1567)SAM_mswC (BSGatlas-gene-1611)SAM_mswD (BSGatlas-gene-1614)SAM_mswE (BSGatlas-gene-1842)
SAM_mswF (BSGatlas-gene-2181)SAM_mswG (BSGatlas-gene-3569)SAM_mswH (BSGatlas-gene-3843)SAM_mswK (BSGatlas-gene-1313)

[-]RF00167: Purine (riboswitch)

Purine_aswA (BSGatlas-gene-708)Purine_gswA (BSGatlas-gene-2600)Purine_gswB (BSGatlas-gene-4537)Purine_gswC (BSGatlas-gene-794)Purine_gswD (BSGatlas-gene-800)

[-]RF00168: Lysine (riboswitch)

L-box riboswitch (BSGatlas-gene-3341)Lysine_kswB (BSGatlas-gene-3910)

[-]RF00174: Cobalamin (riboswitch)

srbL (BSGatlas-gene-3891)

[-]RF00177: SSU_rRNA_bacteria (rRNA)

rrnA-16S (BSGatlas-gene-38)rrnB-16S (BSGatlas-gene-3638)rrnD-16S (BSGatlas-gene-1048)rrnE-16S (BSGatlas-gene-722)rrnG-16S (BSGatlas-gene-218)rrnH-16S (BSGatlas-gene-215)rrnI-16S (BSGatlas-gene-206)
rrnJ-16S (BSGatlas-gene-110)rrnO-16S (BSGatlas-gene-12)rrnW-16S (BSGatlas-gene-122)

[-]RF00230: T-box (riboswitch)

pswB (BSGatlas-gene-1558)pswI (BSGatlas-gene-2795)T-box (BSGatlas-gene-135)T-box (BSGatlas-gene-3359)T-box (BSGatlas-gene-4376)T-box_iswA (BSGatlas-gene-1824)T-box_tboH (BSGatlas-gene-3237)
T-box_tboILV (BSGatlas-gene-3322)T-box_tboL (BSGatlas-gene-3543)T-box_tboS (BSGatlas-gene-24)T-box_tboV (BSGatlas-gene-3297)T-box_tboW (BSGatlas-gene-326)T-box_tboWA (BSGatlas-gene-1358)T-box_tboX (BSGatlas-gene-3982)
T-box_tboYB (BSGatlas-gene-4470)tboA (BSGatlas-gene-3217)tboG (BSGatlas-gene-2956)tboT (BSGatlas-gene-3395)tboTA (BSGatlas-gene-4375)tboTB (BSGatlas-gene-4374)tboY (BSGatlas-gene-3477)

[-]RF00234: glmS (riboswitch)

glmS ribozyme (BSGatlas-gene-246)

[-]RF00379: ydaO-yuaA (riboswitch)

c-di-AMP riboswitch, kimA (BSGatlas-gene-524)c-di-AMP riboswitch, ktrA (BSGatlas-gene-3651)

[-]RF00380: ykoK (riboswitch)

swmG (BSGatlas-gene-1580)

[-]RF00442: ykkC-yxkD (riboswitch)

YkkC riboswitch (BSGatlas-gene-1554)ykkC-yxkD_gdwB (BSGatlas-gene-4513)

[-]RF00504: Glycine (riboswitch)

Gly-box (BSGatlas-gene-2882)

[-]RF00515: PyrR (riboswitch)

PyrR_pyaA (BSGatlas-gene-1829)PyrR_pyaB (BSGatlas-gene-1831)PyrR_pyaC (BSGatlas-gene-1833)

[-]RF00516: ylbH (riboswitch)

ylbH_csfG (BSGatlas-gene-1775)

[-]RF00555: L13_leader (riboswitch)

ldlM (BSGatlas-gene-196)

[-]RF00556: L19_leader (riboswitch)

NA (BSGatlas-gene-1891)

[-]RF00557: L10_leader (riboswitch)

L10-leader_ldlJ (BSGatlas-gene-147)

[-]RF00558: L20_leader (riboswitch)

NA (BSGatlas-gene-3387)

[-]RF00559: L21_leader (riboswitch)

ldlU (BSGatlas-gene-3283)

[-]RF01410: BsrC (sRNA)

bsrC (BSGatlas-gene-514)BsrC (BSGatlas-gene-631)

[-]RF01411: BsrF (sRNA)

bsrF (BSGatlas-gene-2247)

[-]RF01412: BsrG (sRNA)

bsrG (BSGatlas-gene-2530)BsrG (BSGatlas-gene-3046)BsrG (BSGatlas-gene-3049)SR5 (BSGatlas-gene-2238)

[-]RF01491: rli54 (riboswitch)

rli54 (BSGatlas-gene-4774)

[-]RF01494: rliD (asRNA)

rliD (BSGatlas-gene-1961)

[-]RF01690: Bacillaceae-1 (sRNA)

Bacillaceae-1 (BSGatlas-gene-1047)Bacillaceae-1 (BSGatlas-gene-11)Bacillaceae-1 (BSGatlas-gene-3639)Bacillaceae-1 (BSGatlas-gene-374)Bacillaceae-1 (BSGatlas-gene-42)Bacillaceae-1 (BSGatlas-gene-4282)Bacillaceae-1 (BSGatlas-gene-559)
Bacillaceae-1 (BSGatlas-gene-721)

[-]RF01691: Bacillus-plasmid (sRNA)

Bacillus-plasmid (BSGatlas-gene-601)

[-]RF01735: epsC (riboswitch)

epsC (BSGatlas-gene-4016)

[-]RF01749: pan (riboswitch)

pan (BSGatlas-gene-2641)

[-]RF01764: yjdF (riboswitch)

yjdF (BSGatlas-gene-1434)

[-]RF01766: cspA (riboswitch)

cspA (BSGatlas-gene-1107)cspA (BSGatlas-gene-2581)cspA (BSGatlas-gene-628)

[-]RF01820: RsaE (sRNA)

roxS (BSGatlas-gene-1375)

[-]RF01854: Bacteria_large_SRP (SRP)

scr (BSGatlas-gene-32)

[-]RF02273: FsrA (sRNA)

fsrA (BSGatlas-gene-1678)

[-]RF02370: Trp_leader_2 (riboswitch)

Trp-leader-2 (BSGatlas-gene-2667)

[-]RF02371: PyrG_leader (riboswitch)

PyrG-leader (BSGatlas-gene-4330)

[-]RF02376: SR1 (sRNA)

srrA (BSGatlas-gene-1735)

[-]RF02377: SurA (sRNA)

surA (BSGatlas-gene-2094)

[-]RF02378: SurC (sRNA)

surC (BSGatlas-gene-2978)

[-]RF02449: ncr1015 (sRNA)

ncr1015 (BSGatlas-gene-2215)

[-]RF02450: ncr1175 (sRNA)

rnaC (BSGatlas-gene-3184)

[-]RF02451: ncr1241 (sRNA)

ncr1241 (BSGatlas-gene-3691)

[-]RF02452: ncr1575 (sRNA)

ncr1575 (BSGatlas-gene-688)

[-]RF02453: ncr952 (sRNA)

ncr952 (BSGatlas-gene-1999)

[-]RF02454: ncr982 (sRNA)

ncrF (BSGatlas-gene-2099)

[-]RF02514: 5_ureB_sRNA (sRNA)

5-ureB-sRNA (BSGatlas-gene-4272)

[-]RF02541: LSU_rRNA_bacteria (rRNA)

rrnA-23S (BSGatlas-gene-41)rrnB-23S (BSGatlas-gene-3637)rrnD-23S (BSGatlas-gene-1049)rrnE-23S (BSGatlas-gene-723)rrnG-23S (BSGatlas-gene-219)rrnH-23S (BSGatlas-gene-216)rrnI-23S (BSGatlas-gene-207)
rrnJ-23S (BSGatlas-gene-111)rrnO-23S (BSGatlas-gene-15)rrnW-23S (BSGatlas-gene-123)

[-]RF02675: Ysr141 (sRNA)

Ysr141 (BSGatlas-gene-4776)

[-]RF02746: AsrC (asRNA)

AsrC (BSGatlas-gene-4775)

[-]RF02892: SR6_antitoxin (asRNA)

apbT (BSGatlas-gene-2467)