Welcome to the BSGatlas

Version 1.1

On this website we provide access to our annotation integration efforts for Bacillus subtilis 168. We integrated the gene annotations from BsubCyc, Rfam, RefSeq, SubtiWiki, and some additional resources (see manuscript for details). Each gene indicates from which reources its annotation stem from, and links to the respective resources are provided where applicable. The integration overall improved the annotation of non-coding RNAs (ncRNA) in B. subtilis. Based on public transcription start sites (TSS) and termination sites (TTS), we created a comprehensive annotation of operons, transcripts, and transcriptional units (TU) for 93% of the genes in the genome. We provide the BSGatlas in form of a UCSC browser hub, a downloadable GFF3 file, an excel table, and as a light-weight interactive quick browser directly on this side.

Citation

BSGatlas: An enhanced annotation integration of the Bacillus subtilis genome with enhanced information access
Geissler AS, Anthon C, Alkan F, González-Tortuero E, Poulsen LD, Kallehauge TK, Breüner A, Seemann SE, Vinther J, Gorodkin J . Microbial Genomics, 2021, Accepted

Recent Changes

Jan 15, 2021: Fix rfam outlinks + polished gRNA detail page in browser
Nov 13, 2020: Updated to v1.1
July 25, 2020: Added excel file download option
July 30, 2019: Created public interface of the BSGatlas version 1.0

License

Due to the external resources, this repository's content has *mixed licenses*.