Category
[+]SW 1 Cellular processes
[-]SW 1 Cellular processes
[+]SW 1.1 Cell envelope and cell division
[-]SW 1.1 Cell envelope and cell division
[+]SW 1.1.1 Cell wall synthesis
[-]SW 1.1.1 Cell wall synthesis
[+]SW 1.1.1.1 Biosynthesis of peptidoglycan
[-]SW 1.1.1.1 Biosynthesis of peptidoglycan
alr | amj | asd | dapA | dapB | dapF | dapG |
dat | ddl | gcaD | glmM | glmR | glmS | ldcB |
ldt | mraY | murAA | murAB | murB | murC | murD |
murE | murF | murG | murJ | patA | pgcA | racE |
spoVB | spoVE | walJ | yabM | yciB | ykuQ | ykuR |
ylmD | yrpC |
[+]SW 1.1.1.2 Autolytic activity required for peptidoglycan synthesis (cell elongation)
[-]SW 1.1.1.2 Autolytic activity required for peptidoglycan synthesis (cell elongation)
cwlO | ftsE | ftsX | lytE |
[+]SW 1.1.1.3 Biosynthesis of lipoteichoic acid
[-]SW 1.1.1.3 Biosynthesis of lipoteichoic acid
csbB | dgkA | dgkB | ltaS | yfhO | yfnI | yqgS |
yvgJ |
[+]SW 1.1.1.4 Biosynthesis of teichoic acid
[-]SW 1.1.1.4 Biosynthesis of teichoic acid
dltA | dltB | dltC | dltD | dltE | ggaA | ggaB |
gtaB | gtcA | mnaA | pgcA | tagA | tagB | tagC |
tagD | tagE | tagF | tagG | tagH | tagO |
[+]SW 1.1.1.5 Biosynthesis of teichuronic acid
[-]SW 1.1.1.5 Biosynthesis of teichuronic acid
tuaA/1 | tuaA/2 | tuaB | tuaC | tuaD | tuaE | tuaF |
tuaG | tuaH |
[+]SW 1.1.1.6 Export of anionic polymers and attachment to peptidoglycan
[-]SW 1.1.1.6 Export of anionic polymers and attachment to peptidoglycan
tagG | tagH | tagT | tagU | tagV |
[+]SW 1.1.1.7 Penicillin-binding proteins
[-]SW 1.1.1.7 Penicillin-binding proteins
dacA | dacB | dacC | dacF | pbpA | pbpB | pbpC |
pbpD | pbpE | pbpF | pbpG | pbpH | pbpI | pbpX |
ponA | spoVD |
[+]SW 1.1.1.8 Biosynthesis of the carrier lipid undecaprenylphosphate
[-]SW 1.1.1.8 Biosynthesis of the carrier lipid undecaprenylphosphate
bcrC | uppS |
[+]SW 1.1.2 Cell shape
[-]SW 1.1.2 Cell shape
dynA | glmR | lytE | mbl | mreB | mreBH | mreC |
mreD | pbpA | ponA | rodA | rodZ | ugtP | yubA |
yueF |
[+]SW 1.1.3 Cell wall degradation/ turnover
[-]SW 1.1.3 Cell wall degradation/ turnover
amiE | blyA | cwlA | cwlH | cwlK | cwlO | cwlP |
cwlQ | cwlS | cwlT | gamA | gamP | gamR | glpQ |
iseA | lytA | lytB | lytC | lytD | lytE | lytF |
lytG | lytH | lytS | lytT | murP | murQ | murR |
nagA | nagB | nagZ | pbpE | xepA | xlyA | xlyB |
ykvT | yocH | yqgT | yqiI | ytkC |
[+]SW 1.1.3.1 Autolysis
[-]SW 1.1.3.1 Autolysis
blyA | cwlA | cwlH | cwlK | cwlO | cwlP | cwlQ |
cwlS | cwlT | iseA | lytA | lytB | lytC | lytD |
lytE | lytF | lytG | lytS | lytT | pbpE | xepA |
xlyA | xlyB | yocH |
[+]SW 1.1.3.3 Utilization of cell wall components
[-]SW 1.1.3.3 Utilization of cell wall components
amiE | gamA | gamP | gamR | glpQ | murP | murQ |
murR | nagA | nagB | nagZ | yqiI |
[+]SW 1.1.3.6 Cell wall degradation/ turnover/ Additional genes
[-]SW 1.1.3.6 Cell wall degradation/ turnover/ Additional genes
yqiI |
[+]SW 1.1.4 Capsule biosynthesis and degradation
[-]SW 1.1.4 Capsule biosynthesis and degradation
capA | capB | capC | capE | ggt | pgdS | pghB |
pghC | pghL | pghZ |
[+]SW 1.1.5 Cell wall/ other
[-]SW 1.1.5 Cell wall/ other
clpC | cpgA | cwlC | cwlD | cwlJ | lytH | pdaA |
pdaC | reoM | reoY | spoIID | spoIIM | spoIIP | walH |
walI | walK | walR | wapA | wprA | ydjM | ykfB |
ykfC | yqgT | yrrL |
[+]SW 1.1.6 Cell wall/ other/ based on similarity
[-]SW 1.1.6 Cell wall/ other/ based on similarity
yabE | ybfG | ydhD | ylbI | yngB | yrvJ |
[+]SW 1.1.8 Cell division
[-]SW 1.1.8 Cell division
ddcA | disA | divIB | divIC | divIVA | dynA | ezrA |
ftsA | ftsH | ftsL | ftsW | ftsZ | gpsB | mciZ |
minC | minD | minJ | noc | pbpB | plsX | racA |
rasP | refZ | sepF | sftA | spoVG | tseB | ugtP |
walJ | whiA | yisK | yneA | yodL | ypbE | yrrS |
zapA |
[+]SW 1.1.8.2 Other genes
[-]SW 1.1.8.2 Other genes
ddcA | disA | divIB | divIC | divIVA | dynA | ezrA |
ftsA | ftsH | ftsL | ftsW | ftsZ | gpsB | mciZ |
noc | pbpB | plsX | racA | rasP | refZ | sepF |
sftA | spoVG | tseB | ugtP | walJ | whiA | yisK |
yneA | yodL | ypbE | yrrS | zapA |
[+]SW 1.2 Transporters
[-]SW 1.2 Transporters
[+]SW 1.2.1 ABC transporters
[-]SW 1.2.1 ABC transporters
[+]SW 1.2.1.1 Importers
[-]SW 1.2.1.1 Importers
[+]SW 1.2.1.1.1 Uptake of carbon sources
[-]SW 1.2.1.1.1 Uptake of carbon sources
araN | araP | araQ | frlM | frlN | frlO | ganP |
ganS | mdxE | mdxF | mdxG | melC | melD | melE |
msmX | nupN | nupO | nupP | nupQ | rbsA | rbsB |
rbsC | rbsD | rhiF | rhiG | rhiL | ytcP | ytcQ |
yteP | yurJ |
[+]SW 1.2.1.1.2 Uptake of amino acids
[-]SW 1.2.1.1.2 Uptake of amino acids
artP | artQ | artR | glnH | glnM | glnP | glnQ |
metN | metP | metQ | tcyA | tcyB | tcyC | tcyJ |
tcyK | tcyL | tcyM | tcyN | yxeM | yxeN | yxeO |
[+]SW 1.2.1.1.3 Uptake of peptides
[-]SW 1.2.1.1.3 Uptake of peptides
appA/1 | appA/2 | appB | appC | appD | appF | dppB |
dppC | dppD | dppE | oppA | oppB | oppC | oppD |
oppF | ykfD |
[+]SW 1.2.1.1.4 Uptake of compatible solutes for osmoprotection
[-]SW 1.2.1.1.4 Uptake of compatible solutes for osmoprotection
opuAA | opuAB | opuAC | opuBA | opuBB | opuBC | opuCA |
opuCB | opuCC | opuCD |
[+]SW 1.2.1.1.5 Uptake of iron/ siderophores
[-]SW 1.2.1.1.5 Uptake of iron/ siderophores
fecC | fecD | fecE | fecF | feuA | feuB | feuC |
fhuB | fhuC | fhuD | fhuG | fpbN | fpbO | fpbP |
fpbQ | yfhA | yfiY | yfiZ | yhfQ | yusV | yxeB |
[+]SW 1.2.1.1.6 Uptake of ions
[-]SW 1.2.1.1.6 Uptake of ions
mntA | mntB | mntC | mntD | pstA | pstBA | pstBB |
pstC | pstS | ssuA | ssuB | ssuC | yvgL | yvgM |
znuA | znuB | znuC |
[+]SW 1.2.1.2 Exporters
[-]SW 1.2.1.2 Exporters
[+]SW 1.2.1.2.2 Export of antibiotic substances
[-]SW 1.2.1.2.2 Export of antibiotic substances
albC | albD | sunT |
[+]SW 1.2.1.2.3 Export of peptides
[-]SW 1.2.1.2.3 Export of peptides
bceA | bceB | psdA | psdB | skfE | skfF | yknY |
yknZ | yxdL | yxdM | yxlF | yxlG | yydI | yydJ |
[+]SW 1.2.1.2.4 Export of cell wall components
[-]SW 1.2.1.2.4 Export of cell wall components
tagG | tagH |
[+]SW 1.2.1.2.6 Exporters of unknown function
[-]SW 1.2.1.2.6 Exporters of unknown function
ycbN | yclH | yclI | ydbJ | ydbK | yfiB | yfiC |
ygaD | yhaP | yhaQ | yhcE | yhcG | yhcH | yhcI |
yknU | yknV | ythP | ythQ | yvfR | yvfS | yvrN |
yvrO | ywjA | yybJ | yybK | yybL |
[+]SW 1.2.1.3 Regulatory ABC transporters
[-]SW 1.2.1.3 Regulatory ABC transporters
bmrC | bmrD | cydC | cydD | ecsA | ecsB | ftsE |
ftsX | sufC |
[+]SW 1.2.1.4 Unknown ABC transporters
[-]SW 1.2.1.4 Unknown ABC transporters
lplA | lplB | lplC | yckA | yckB | ydiF | yfmM |
yfmR | yhcJ | yhjP | yjkA | yjkB | ykpA | ytlA |
ytlC | ytlD | ytrB | ytrC | ytrD | ytrE | ytrF |
[+]SW 1.2.2 Phosphotransferase system
[-]SW 1.2.2 Phosphotransferase system
bglP | fruA | gamP | gmuA | gmuB | gmuC | levD |
levE | levF | levG | licA | licB | licC | malP |
manP | mtlA | mtlF | murP | nagP | ptsA | ptsG |
ptsH | ptsI | sacP | sacX | treP | ywbA | yyzE |
[+]SW 1.2.2.2 Sugar specific PTS proteins
[-]SW 1.2.2.2 Sugar specific PTS proteins
bglP | fruA | gamP | gmuA | gmuB | gmuC | levD |
levE | levF | levG | licA | licB | licC | malP |
manP | mtlA | mtlF | murP | nagP | ptsA | ptsG |
sacP | sacX | treP | ywbA | yyzE |
[+]SW 1.2.3 ECF transporter
[-]SW 1.2.3 ECF transporter
ribU | thiT | thiU | thiV | thiW | thiX | trpP |
ybaE | ybaF | ybxA | yhfU | yuiG |
[+]SW 1.2.3.1 The general components of the ECF transporters
[-]SW 1.2.3.1 The general components of the ECF transporters
ybaE | ybaF | ybxA |
[+]SW 1.2.3.2 The substrate-specific S components of the ECF transporters
[-]SW 1.2.3.2 The substrate-specific S components of the ECF transporters
ribU | thiT | trpP | yhfU | yuiG |
[+]SW 1.2.4 Transporters/ other
[-]SW 1.2.4 Transporters/ other
[+]SW 1.2.4.1 Amino acid transporters
[-]SW 1.2.4.1 Amino acid transporters
aapA | aimA | alsT | azlC | azlD | bcaP | braB |
brnQ | dctP | gabP | gerAB | gerBB | gerKB | glnT |
gltP | gltT | hutM | opuE | putP | rocC | rocE |
steT | tcyP | ybgF | ybxG | ycgH | ydgF | yecA |
yfkT | yflA | yhjB | yndE | yodF | yrbD | ytnA |
yvbW | yveA | yvsH | ywcA |
[+]SW 1.2.4.1.1 Solute:sodium symporter family
[-]SW 1.2.4.1.1 Solute:sodium symporter family
alsT | glnT | gltT | opuE | putP | yodF | ywcA |
[+]SW 1.2.4.1.3 Alanine or glycine cation symporter family
[-]SW 1.2.4.1.3 Alanine or glycine cation symporter family
alsT | glnT | yflA | yrbD |
[+]SW 1.2.4.1.4 APC superfamily
[-]SW 1.2.4.1.4 APC superfamily
aapA | aimA | bcaP | gabP | gerAB | gerBB | gerKB |
hutM | rocC | rocE | steT | ybgF | ybxG | ycgH |
ydgF | yecA | yfkT | yndE | ytnA | yvbW | yveA |
yvsH |
[+]SW 1.2.4.1.6 Dicarboxylate/amino acid:cation symporter
[-]SW 1.2.4.1.6 Dicarboxylate/amino acid:cation symporter
dctP | gltP | gltT | tcyP |
[+]SW 1.2.4.1.8 Additional amino acid transporters
[-]SW 1.2.4.1.8 Additional amino acid transporters
azlC | azlD |
[+]SW 1.2.4.11 Other exporters
[-]SW 1.2.4.11 Other exporters
blt | bmr | epsK | fluC | mdr | mneS | narK |
ycnB | yhcA | yhdV | ykkC | ykkD | ywrA | ywrB |
[+]SW 1.2.4.12 Other transporters
[-]SW 1.2.4.12 Other transporters
csbC | cstA | dltB | lmrB | mtrA | spoVV | tetB |
ybaS | ybcL | ycbK | yccK | yceJ | ycgH | ycsG |
ydbO | yddS | ydeG | ydeR | ydgH | ydgK | ydhB |
yecA | yfhI | yfiS | yfiU | yfkF | yfkL | yflA |
yfmI | yfmO | yfnC | yhjB | yitG | yjbB | yjnA |
ypdP | yrkJ | ytnM | yunE | yvgK |
[+]SW 1.2.4.15 Multidrug exporters/ based on homology
[-]SW 1.2.4.15 Multidrug exporters/ based on homology
yisQ | yoeA | yojI | ypnP |
[+]SW 1.2.4.3 Carbohydrate transporter
[-]SW 1.2.4.3 Carbohydrate transporter
araE | exuT | glcP | glcU | glpF | glpT | gntP |
gutP | iolF | iolT | kdgT | mdtP | xynP | ycbE |
yfiG | yjmB |
[+]SW 1.2.4.4 Transporter for organic acids
[-]SW 1.2.4.4 Transporter for organic acids
cimH | citH | citM | dctP | gabP | hbuT | lctP |
lutP | maeN | mleN | pftA | pftB | ybaR | yflS |
yoaB | yraO | yrhG |
[+]SW 1.2.4.5 Metal ion transporter
[-]SW 1.2.4.5 Metal ion transporter
arsB | aseA | cadA | chaA | copA | copZ | corA |
czcD | efeO | efeU | khtT | khtU | kimA | ktrA |
ktrB | ktrC | ktrD | mgtE | mntH | mrpA | mrpB |
mrpC | mrpD | mrpE | mrpF | mrpG | nhaK | pfeT |
ycnJ |
[+]SW 1.2.4.6 Nucleotide/ nucleoside transporter
[-]SW 1.2.4.6 Nucleotide/ nucleoside transporter
nupC | nupG | pbuE | pbuG | pbuO | pbuX | pucI |
pucJ | pucK | pyrP | yxlA |
[+]SW 1.3 Homeostasis
[-]SW 1.3 Homeostasis
[+]SW 1.3.1 Metal ion homeostasis (K, Na, Ca, Mg)
[-]SW 1.3.1 Metal ion homeostasis (K, Na, Ca, Mg)
chaA | citM | corA | cpaA | khtS | khtT | khtU |
kimA | ktrA | ktrB | ktrC | ktrD | mgtE | mpfA |
mrpA | mrpB | mrpC | mrpD | mrpE | mrpF | mrpG |
natA | natB | natR | nhaC | nhaK | yetJ | yfjQ |
yhdT | yloB | yqhB | yrkA | yugO | yugS |
[+]SW 1.3.1.1 Magnesium uptake/ efflux
[-]SW 1.3.1.1 Magnesium uptake/ efflux
citM | mgtE | mpfA | yfjQ | yhdT | yqhB | yrkA |
yugS |
[+]SW 1.3.1.2 Sodium uptake/ export
[-]SW 1.3.1.2 Sodium uptake/ export
mrpA | mrpB | mrpC | mrpD | mrpE | mrpF | mrpG |
natA | natB | natR | nhaC | nhaK |
[+]SW 1.3.1.3 Potassium uptake/ export
[-]SW 1.3.1.3 Potassium uptake/ export
cpaA | khtS | khtT | khtU | kimA | ktrA | ktrB |
ktrC | ktrD | yugO |
[+]SW 1.3.1.4 Metal ion homeostasis/ Other
[-]SW 1.3.1.4 Metal ion homeostasis/ Other
chaA | corA | yetJ | yloB |
[+]SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo)
[-]SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo)
copA | copZ | csoR | czcD | czcO | czrA | mneP |
mneS | mntA | mntB | mntC | mntD | mntH | mntR |
yceF | ycnJ | ycnK | yhjQ | ykoY | yvgL | yvgM |
zagA | zinT | znuA | znuB | znuC | zur |
[+]SW 1.3.3 Acquisition of iron
[-]SW 1.3.3 Acquisition of iron
besA | btr | cypX | dhbA | dhbB | dhbC | dhbE |
dhbF | dps | efeB | efeO | efeU | fbpA | fbpB |
fbpC | fecC | fecD | fecE | fecF | feuA | feuB |
feuC | fhuB | fhuC | fhuD | fhuG | fpbN | fpbO |
fpbP | fpbQ | fur | hmoA | hmoB | mrgA | pchR |
ybbA | yfhA | yfiY | yfiZ | yhfQ | ylaN | ymfD |
ytpQ | yusV | yvmC | yxeB |
[+]SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores
[-]SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores
fecC | fecD | fecE | fecF | feuA | feuB | feuC |
fhuB | fhuC | fhuD | fhuG | fpbN | fpbO | fpbP |
fpbQ | yfhA | yfiY | yfiZ | yhfQ | yusV | yxeB |
[+]SW 1.3.3.2 Elemental iron transport system
[-]SW 1.3.3.2 Elemental iron transport system
efeB | efeO | efeU |
[+]SW 1.3.3.3 Acquisition of iron / Other
[-]SW 1.3.3.3 Acquisition of iron / Other
besA | btr | cypX | dhbA | dhbB | dhbC | dhbE |
dhbF | dps | fbpA | fbpB | fbpC | fur | hmoA |
hmoB | mrgA | pchR | ybbA | yhfQ | ylaN | ymfD |
ytpQ | yvmC |
[+]SW 1.3.4 Acquisition of iron/ based on similarity
[-]SW 1.3.4 Acquisition of iron/ based on similarity
ytoA |
[+]SW 2 Metabolism
[-]SW 2 Metabolism
[+]SW 2.1 Electron transport and ATP synthesis
[-]SW 2.1 Electron transport and ATP synthesis
[+]SW 2.1.1 Regulators of electron transport
[-]SW 2.1.1 Regulators of electron transport
arfM | fnr | resD | resE | rex |
[+]SW 2.1.2 Respiration
[-]SW 2.1.2 Respiration
cccA | cccB | ccdA | ctaC | ctaD | ctaE | ctaF |
ctaG | cydA | cydB | cydC | cydD | narG | narH |
narI | narJ | narK | nasD | nasE | nasF | ndh |
ndhF | qcrA | qcrB | qcrC | qoxA | qoxB | qoxC |
qoxD | resA | resB | resC | sco | yojN | ythA |
ythB | ywcJ |
[+]SW 2.1.2.1 Terminal oxidases
[-]SW 2.1.2.1 Terminal oxidases
ctaC | ctaD | ctaE | ctaF | ctaG | cydA | cydB |
cydC | cydD | qoxA | qoxB | qoxC | qoxD | sco |
ythA | ythB |
[+]SW 2.1.2.2 Anaerobic respiration
[-]SW 2.1.2.2 Anaerobic respiration
narG | narH | narI | narJ | narK | nasD | nasE |
nasF | ywcJ |
[+]SW 2.1.2.3 Anaerobic respiration/based on similarity
[-]SW 2.1.2.3 Anaerobic respiration/based on similarity
yojN |
[+]SW 2.1.2.4 Respiration/ other
[-]SW 2.1.2.4 Respiration/ other
cccA | cccB | ccdA | ndh | ndhF | qcrA | qcrB |
qcrC | resA | resB | resC |
[+]SW 2.1.3 Electron transport/ other
[-]SW 2.1.3 Electron transport/ other
cypC | etfA | etfB | fatR | fer | hmp | nfrA |
tlp | trxA | trxB | ycnD | yetO | yjiB | ykuN |
ykuP | yosR | yrhJ | yumC |
[+]SW 2.1.4 Electron transport/ other/ based on similarity
[-]SW 2.1.4 Electron transport/ other/ based on similarity
ahpA | cypA | hypO | ycgT | ydbP | ydeQ | ydfQ |
yhfW | yjgC | yneN | yoaE | yodC | yrkL | ytpP |
yusE | yutJ | ywrO | yyaE |
[+]SW 2.1.5 ATP synthesis
[-]SW 2.1.5 ATP synthesis
ackA | atpA | atpB | atpC | atpD | atpE | atpF |
atpG | atpH | atpI | pgk | sucC | sucD |
[+]SW 2.1.5.2 Substrate-level phosphorylation
[-]SW 2.1.5.2 Substrate-level phosphorylation
ackA | pgk | sucC | sucD |
[+]SW 2.2 Carbon metabolism
[-]SW 2.2 Carbon metabolism
[+]SW 2.2.1 Carbon core metabolism
[-]SW 2.2.1 Carbon core metabolism
ackA | alsD | alsR | alsS | bdhA | ccpC | ccpN |
cggR | citB | citG | citZ | eno | fbaA | fbp |
gapA | gapB | glcT | glpX | gndA | icd | lctP |
ldh | mdh | mgsA | odhA | odhB | pckA | pdhA |
pdhB | pdhC | pdhD | pfkA | pgi | pgk | pgm |
pta | ptsG | pycA | pyk | rex | rpe | sdhA |
sdhB | sdhC | sucC | sucD | tkt | tpi | ykgB |
yqfL | ywjH | ywlF | zwf |
[+]SW 2.2.1.2 Gluconeogenesis
[-]SW 2.2.1.2 Gluconeogenesis
ccpN | eno | fbaA | fbp | gapB | glpX | pckA |
pgi | pgk | pgm | tpi | yqfL |
[+]SW 2.2.1.3 Pentose phosphate pathway
[-]SW 2.2.1.3 Pentose phosphate pathway
gndA | rpe | tkt | ykgB | ywjH | ywlF | zwf |
[+]SW 2.2.1.4 TCA cycle
[-]SW 2.2.1.4 TCA cycle
ccpC | citB | citG | citZ | icd | mdh | odhA |
odhB | pdhA | pdhB | pdhC | pdhD | pycA | sdhA |
sdhB | sdhC | sucC | sucD |
[+]SW 2.2.2 Utilization of specific carbon sources
[-]SW 2.2.2 Utilization of specific carbon sources
[+]SW 2.2.2.1 Utilization of organic acids
[-]SW 2.2.2.1 Utilization of organic acids
acsA | acuA | acuC | cimH | citH | citM | citS |
citT | cstA | dctB | dctP | dctR | dctS | lutA |
lutB | lutC | lutP | lutR | maeA | maeN | malK |
malR | malS | mleA | mleN | pftA | pftB | ybaR |
yflS | yoaB | yraO | ytsJ |
[+]SW 2.2.2.14 Utilization of glucarate/galactarate
[-]SW 2.2.2.14 Utilization of glucarate/galactarate
ycbC | ycbD | ycbE | ycbF | ycbG | ycbH |
[+]SW 2.2.2.15 Utilization of hexuronate
[-]SW 2.2.2.15 Utilization of hexuronate
exuR | exuT | kdgA | kdgK | kdgR | kdgT | kduD |
kduI | uxaA | uxaB | uxaC | uxuA | yjmB | yjmC |
yjmD | yjmF |
[+]SW 2.2.2.16 Utilization of inositol
[-]SW 2.2.2.16 Utilization of inositol
iolA | iolB | iolC | iolD | iolE | iolF | iolG |
iolH | iolI | iolJ | iolQ | iolR | iolS | iolT |
iolU | iolW | iolX | yfiG |
[+]SW 2.2.2.17 Utilization of amino sugars
[-]SW 2.2.2.17 Utilization of amino sugars
frlB | frlD | frlM | frlN | frlO | frlR | gamA |
gamP | gamR | murP | murQ | murR | nagA | nagB |
nagP | nagR | yurJ |
[+]SW 2.2.2.18 Utilization of beta-glucosides
[-]SW 2.2.2.18 Utilization of beta-glucosides
bglA | bglH | bglP | licT | yckE |
[+]SW 2.2.2.19 Utilization of sucrose
[-]SW 2.2.2.19 Utilization of sucrose
fruC | sacA | sacB | sacP | sacT | sacX | sacY |
[+]SW 2.2.2.21 Utilization of melibiose
[-]SW 2.2.2.21 Utilization of melibiose
melA | melC | melD | melE | melR | msmX |
[+]SW 2.2.2.23 Utilization of starch/ maltodextrin
[-]SW 2.2.2.23 Utilization of starch/ maltodextrin
amyE | amyX | glcK | maa | malL | mdxE | mdxF |
mdxG | msmX | pgcM | yvdE | yvdF |
[+]SW 2.2.2.24 Utilization of galactan
[-]SW 2.2.2.24 Utilization of galactan
ganA | ganB | ganP | ganQ | ganR | ganS | msmX |
[+]SW 2.2.2.25 Utilization of glucomannan
[-]SW 2.2.2.25 Utilization of glucomannan
gmuA | gmuB | gmuC | gmuD | gmuE | gmuF | gmuG |
gmuR |
[+]SW 2.2.2.26 Utilization of pectin
[-]SW 2.2.2.26 Utilization of pectin
lplD | msmX | rhgR | rhiF | rhiG | rhiL | rhiN |
ybcM | yesT | yesV | yesW | yesX | yesY | yesZ |
yetA | ytcP | ytcQ | yteP | yteR |
[+]SW 2.2.2.27 Utilization of other polymeric carbohydrates
[-]SW 2.2.2.27 Utilization of other polymeric carbohydrates
bglC | bglS | csn | levB | levD | levE | levF |
levG | levR | licA | licB | licC | licH | licR |
licT | pel | pelB | pelC | sacC | senS | xynC |
xynD | ysdC | yugT |
[+]SW 2.2.2.28 Utilization of other pentoses and hexoses
[-]SW 2.2.2.28 Utilization of other pentoses and hexoses
ydaE |
[+]SW 2.2.2.3 Utilization of glycerol/ glycerol-3-phosphate
[-]SW 2.2.2.3 Utilization of glycerol/ glycerol-3-phosphate
glpD | glpF | glpK | glpP | glpQ | glpT |
[+]SW 2.2.2.5 Utilization of xylan/ xylose
[-]SW 2.2.2.5 Utilization of xylan/ xylose
araE | xylA | xylB | xylR | xynA | xynB | xynP |
[+]SW 2.2.2.6 Utilization of arabinan/ arabinose/ arabitol
[-]SW 2.2.2.6 Utilization of arabinan/ arabinose/ arabitol
abf2 | abfA | abn2 | abnA | araA | araB | araD |
araE | araN | araP | araQ | araR |
[+]SW 2.2.2.7 Utilization of fructose
[-]SW 2.2.2.7 Utilization of fructose
fruA | fruK | fruR | levD | levE | levF | levG |
levR |
[+]SW 2.3 Amino acid/ nitrogen metabolism
[-]SW 2.3 Amino acid/ nitrogen metabolism
[+]SW 2.3.1 Biosynthesis/ acquisition of amino acids
[-]SW 2.3.1 Biosynthesis/ acquisition of amino acids
[+]SW 2.3.1.1 Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation
[-]SW 2.3.1.1 Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation
alsT | glnA | glnH | glnK | glnL | glnM | glnP |
glnQ | glnR | glnT | gltA | gltB | gltC | gltT |
nrgA | nrgB | tnrA |
[+]SW 2.3.1.10 Biosynthesis/ acquisition of methionine/ S-adenosylmethionine
[-]SW 2.3.1.10 Biosynthesis/ acquisition of methionine/ S-adenosylmethionine
hom | luxS | metA | metC | metE | metI | metK |
metN | metP | metQ | mtnA | mtnB | mtnD | mtnE |
mtnK | mtnN | mtnU | mtnW | mtnX | patB |
[+]SW 2.3.1.11 Biosynthesis/ acquisition of methionine/ S-adenosylmethionine/ based on similarity
[-]SW 2.3.1.11 Biosynthesis/ acquisition of methionine/ S-adenosylmethionine/ based on similarity
ybgG | yitJ | yoaD | yxjG | yxjH |
[+]SW 2.3.1.12 Biosynthesis/ acquisition of branched-chain amino acids
[-]SW 2.3.1.12 Biosynthesis/ acquisition of branched-chain amino acids
azlB | azlC | azlD | bcaP | braB | brnQ | ilvA |
ilvB | ilvC | ilvD | ilvH | leuA | leuB | leuC |
leuD | yabJ | ybgE | ywaA |
[+]SW 2.3.1.13 Biosynthesis/ acquisition of aromatic amino acids
[-]SW 2.3.1.13 Biosynthesis/ acquisition of aromatic amino acids
aroA | aroB | aroC | aroD | aroE | aroF | aroH |
aroK | hisC | mtrB | pabA | pheA | rtpA | trpA |
trpB | trpC | trpD | trpE | trpF | trpP | tyrA |
[+]SW 2.3.1.14 Biosynthesis/ acquisition of histidine
[-]SW 2.3.1.14 Biosynthesis/ acquisition of histidine
hisA | hisB | hisD | hisF | hisG | hisH | hisI |
hisJ | hutM | prs |
[+]SW 2.3.1.15 Biosynthesis/acquisition of L- and D-alanine
[-]SW 2.3.1.15 Biosynthesis/acquisition of L- and D-alanine
alaT | alr | dat | ytnA |
[+]SW 2.3.1.2 Biosynthesis/ acquisition of proline
[-]SW 2.3.1.2 Biosynthesis/ acquisition of proline
proA | proB | proG | proH | proI | proJ | putP |
[+]SW 2.3.1.4 Biosynthesis/ acquisition of arginine
[-]SW 2.3.1.4 Biosynthesis/ acquisition of arginine
ahrC | argB | argC | argD | argF | argG | argH |
argJ | artP | artQ | artR | carA | carB | rocC |
rocE | sr1 |
[+]SW 2.3.1.5 Biosynthesis/ acquisition of aspartate/ asparagine
[-]SW 2.3.1.5 Biosynthesis/ acquisition of aspartate/ asparagine
asnB | asnH | asnO | aspB | yveA |
[+]SW 2.3.1.6 Biosynthesis/ acquisition of lysine/ threonine
[-]SW 2.3.1.6 Biosynthesis/ acquisition of lysine/ threonine
asd | bcaP | dapA | dapB | dapF | dapG | hom |
lysA | lysC | patA | thrB | thrC | thrD | thrR |
ybxG | ykuR | yvsH |
[+]SW 2.3.1.7 Biosynthesis/ acquisition of lysine/ threonine/ based on similarity
[-]SW 2.3.1.7 Biosynthesis/ acquisition of lysine/ threonine/ based on similarity
ykuQ |
[+]SW 2.3.1.8 Biosynthesis/ acquisition of serine/ glycine/ alanine
[-]SW 2.3.1.8 Biosynthesis/ acquisition of serine/ glycine/ alanine
aimA | bcaP | glyA | serA | serB | serC | ybxG |
yrbD |
[+]SW 2.3.1.9 Biosynthesis/ acquisition of cysteine
[-]SW 2.3.1.9 Biosynthesis/ acquisition of cysteine
ascR | cysE | cysK | mccA | mccB | tcyA | tcyB |
tcyC | tcyJ | tcyK | tcyL | tcyM | tcyN | tcyP |
yxeM | yxeN | yxeO |
[+]SW 2.3.2 Utilization of amino acids
[-]SW 2.3.2 Utilization of amino acids
[+]SW 2.3.2.1 Utilization of glutamine/ glutamate
[-]SW 2.3.2.1 Utilization of glutamine/ glutamate
alsT | glnH | glnK | glnL | glnM | glnP | glnQ |
glnT | glsA | gltT | gudB | rocG | ylaM |
[+]SW 2.3.2.10 Utilization of gamma-amino butyric acid
[-]SW 2.3.2.10 Utilization of gamma-amino butyric acid
gabD | gabP | gabR | gabT |
[+]SW 2.3.2.4 Utilization of arginine/ ornithine
[-]SW 2.3.2.4 Utilization of arginine/ ornithine
ahrC | rocA | rocB | rocC | rocD | rocE | rocF |
rocG | rocR | sr1 |
[+]SW 2.3.2.5 Utilization of histidine
[-]SW 2.3.2.5 Utilization of histidine
hutG | hutH | hutI | hutM | hutP | hutU |
[+]SW 2.3.2.6 Utilization of asparagine/ aspartate
[-]SW 2.3.2.6 Utilization of asparagine/ aspartate
ansA | ansB | ansR | ansZ | yveA |
[+]SW 2.3.2.7 Utilization of alanine/ serine
[-]SW 2.3.2.7 Utilization of alanine/ serine
adeR | aimA | ald | sdaAA | sdaAB | yrbD |
[+]SW 2.3.2.8 Utilization of threonine/ glycine
[-]SW 2.3.2.8 Utilization of threonine/ glycine
bcaP | gcvH | gcvPA | gcvPB | gcvT | kbl | tdh |
ybxG |
[+]SW 2.3.2.9 Utilization of branched-chain amino acids
[-]SW 2.3.2.9 Utilization of branched-chain amino acids
azlB | azlC | azlD | bcaP | bcd | bkdAA | bkdAB |
bkdB | bkdR | buk | citB | lpdV | mmgA | mmgB |
mmgC | mmgD | mmgE | mmgF | ptb | yngE | yngF |
yngG | yngH | yngHB | yngI | yngJ |
[+]SW 2.3.3 Utilization of nitrogen sources other than amino acids
[-]SW 2.3.3 Utilization of nitrogen sources other than amino acids
[+]SW 2.3.3.1 Utilization of nitrate/ nitrite
[-]SW 2.3.3.1 Utilization of nitrate/ nitrite
nasA | nasB | nasC | nasD | nasE | nasF |
[+]SW 2.3.3.3 Utilization of amino sugars
[-]SW 2.3.3.3 Utilization of amino sugars
frlB | frlD | frlM | frlN | frlO | frlR | gamA |
gamP | gamR | murP | murQ | murR | nagA | nagB |
nagP | nagR | yurJ |
[+]SW 2.3.3.4 Utilization of peptides
[-]SW 2.3.3.4 Utilization of peptides
appB | appC | appD | appF | dppA | dppB | dppC |
dppD | dppE | dtpT | oppA | oppB | oppC | oppD |
oppF | papA | papB | pepT | ykfD |
[+]SW 2.3.3.5 Utilization of proteins
[-]SW 2.3.3.5 Utilization of proteins
aprE | aprX | bpr | epr | ispA | mpr | nprB |
nprE | vpr |
[+]SW 2.4 Lipid metabolism
[-]SW 2.4 Lipid metabolism
[+]SW 2.4.1 Utilization of lipids
[-]SW 2.4.1 Utilization of lipids
acdA | acsA | acuA | acuC | cotR | etfA | etfB |
fadA | fadB | fadE | fadF | fadG | fadH | fadM |
fadN | fadR | glpD | glpP | glpQ | glpT | lcfA |
lcfB | lip | lipB | lipC | nap | pnbA | scoA |
scoB | ybfK | yhdW | yqiK |
[+]SW 2.4.1.1 Utilization of phospholipids
[-]SW 2.4.1.1 Utilization of phospholipids
cotR | glpD | glpP | glpQ | glpT | lipC |
[+]SW 2.4.1.2 Utilization of phospholipids/ based on similarity
[-]SW 2.4.1.2 Utilization of phospholipids/ based on similarity
yhdW | yqiK |
[+]SW 2.4.1.3 Utilization of fatty acids
[-]SW 2.4.1.3 Utilization of fatty acids
acdA | acsA | acuA | acuC | etfA | etfB | fadA |
fadB | fadE | fadF | fadG | fadH | fadM | fadN |
fadR | lcfA | lcfB | scoA | scoB |
[+]SW 2.4.1.4 Utilization of lipids/ other
[-]SW 2.4.1.4 Utilization of lipids/ other
lip | lipB | nap | pnbA | ybfK |
[+]SW 2.4.2 Biosynthesis of lipids
[-]SW 2.4.2 Biosynthesis of lipids
accA | accB | accC | accD | acpA | acpS | birA |
cdsA | clsA | degV | dxs | fabD | fabF | fabG |
fabHA | fabHB | fabI | fabL | fakA | fapR | fni |
gpsA | ispC | ispD | ispE | ispF | ispG | ispH |
mprF | nudF | pgpB | pgsA | plsC | plsX | plsY |
psd | pssA | uppS | ycsD | yhdN | yhfR | yisP |
yitS | yqhY | yqiD | ywiE | ywjE | ywpB |
[+]SW 2.4.2.1 Biosynthesis of fatty acids
[-]SW 2.4.2.1 Biosynthesis of fatty acids
accA | accB | accC | accD | acpA | acpS | birA |
fabD | fabF | fabG | fabHA | fabHB | fabI | fabL |
fapR | plsC | plsX | ycsD | yhdN | yqhY | ywpB |
[+]SW 2.4.2.2 Biosynthesis of phospholipids
[-]SW 2.4.2.2 Biosynthesis of phospholipids
cdsA | clsA | degV | fakA | gpsA | mprF | pgpB |
pgsA | plsY | psd | pssA | yitS | ywiE | ywjE |
[+]SW 2.4.2.3 Biosynthesis of isoprenoids
[-]SW 2.4.2.3 Biosynthesis of isoprenoids
dxs | fni | ispC | ispD | ispE | ispF | ispG |
ispH | nudF | uppS | yhfR | yisP | yqiD |
[+]SW 2.4.3 Lipid metabolism/ other
[-]SW 2.4.3 Lipid metabolism/ other
cypC | des | desK | desR | fatR | gtaB | pcrB |
pgcA | ugtP | yetO | yjiB | yrhJ |
[+]SW 2.5 Nucleotide metabolism
[-]SW 2.5 Nucleotide metabolism
[+]SW 2.5.1 Utilization of nucleotides
[-]SW 2.5.1 Utilization of nucleotides
adeC | deoR | dra | drm | nucB | nupC | pdp |
pucA | pucB | pucC | pucD | pucE | pucF | pucG |
pucH | pucI | pucJ | pucK | pucL | pucM | pucR |
[+]SW 2.5.2 Biosynthesis/ acquisition of nucleotides
[-]SW 2.5.2 Biosynthesis/ acquisition of nucleotides
[+]SW 2.5.2.1 Biosynthesis/ acquisition of purine nucleotides
[-]SW 2.5.2.1 Biosynthesis/ acquisition of purine nucleotides
adk | gmk | guaA | guaB | nupG | nupN | nupO |
nupP | nupQ | pbuG | pbuX | prs | purA | purB |
purC | purD | purE | purF | purH | purK | purL |
purM | purN | purQ | purR | purS | purT | ykkE |
[+]SW 2.5.2.2 Biosynthesis/ acquisition of purine nucleotides/ based on similarity
[-]SW 2.5.2.2 Biosynthesis/ acquisition of purine nucleotides/ based on similarity
pbuO |
[+]SW 2.5.2.3 Purine salvage and interconversion
[-]SW 2.5.2.3 Purine salvage and interconversion
apt | dck | deoD | dgk | guaC | guaD | hprT |
pupG | xpt |
[+]SW 2.5.2.4 Biosynthesis/ acquisition of pyrimidine nucleotides
[-]SW 2.5.2.4 Biosynthesis/ acquisition of pyrimidine nucleotides
cmk | prs | pyrAA | pyrAB | pyrB | pyrC | pyrD |
pyrE | pyrF | pyrG | pyrH | pyrK | pyrP | pyrR |
tdk | thyA | thyB | tmk | udk | upp |
[+]SW 2.5.2.5 Biosynthesis/ acquisition of nucleotides/ other
[-]SW 2.5.2.5 Biosynthesis/ acquisition of nucleotides/ other
nrdE | nrdEB | nrdEB | nrdF | nrdI | rnr | yhcR |
[+]SW 2.5.2.6 Biosynthesis/ acquisition of nucleotides/ other/ based on similarity
[-]SW 2.5.2.6 Biosynthesis/ acquisition of nucleotides/ other/ based on similarity
yutK | yxlA |
[+]SW 2.5.3 Metabolism of signalling nucleotides
[-]SW 2.5.3 Metabolism of signalling nucleotides
cdaA | cdaR | cdaS | dgcK | dgcP | dgcW | disA |
gdpP | nahA | pdeH | pgpH | radA | relA | sasA |
sasB | ycnB | yfkN | yhcA |
[+]SW 2.5.4 Nucleotide metabolism/ other
[-]SW 2.5.4 Nucleotide metabolism/ other
cdd | ndk | pbuE | yjcG | yncF | yosS | ypgQ |
yqeK | ytlP |
[+]SW 2.6 Additional metabolic pathways
[-]SW 2.6 Additional metabolic pathways
[+]SW 2.6.1 Biosynthesis of cell wall components
[-]SW 2.6.1 Biosynthesis of cell wall components
[+]SW 2.6.1.1 Biosynthesis of peptidoglycan
[-]SW 2.6.1.1 Biosynthesis of peptidoglycan
alr | amj | asd | dapA | dapB | dapF | dapG |
dat | ddl | gcaD | glmM | glmR | glmS | ldcB |
ldt | mraY | murAA | murAB | murB | murC | murD |
murE | murF | murG | murJ | patA | pgcA | racE |
spoVB | spoVE | walJ | yabM | yciB | ykuQ | ykuR |
ylmD | yrpC |
[+]SW 2.6.1.2 Biosynthesis of lipoteichoic acid
[-]SW 2.6.1.2 Biosynthesis of lipoteichoic acid
csbB | dgkA | dgkB | ltaS | yfhO | yfnI | yqgS |
yvgJ |
[+]SW 2.6.1.3 Biosynthesis of teichoic acid
[-]SW 2.6.1.3 Biosynthesis of teichoic acid
dltA | dltB | dltC | dltD | dltE | ggaA | ggaB |
gtaB | gtcA | mnaA | pgcA | tagA | tagB | tagC |
tagD | tagE | tagF | tagG | tagH | tagO |
[+]SW 2.6.1.4 Biosynthesis of teichuronic acid
[-]SW 2.6.1.4 Biosynthesis of teichuronic acid
tuaA/1 | tuaA/2 | tuaB | tuaC | tuaD | tuaE | tuaF |
tuaG | tuaH |
[+]SW 2.6.1.5 Biosynthesis of the carrier lipid undecaprenylphosphate
[-]SW 2.6.1.5 Biosynthesis of the carrier lipid undecaprenylphosphate
bcrC | uppS |
[+]SW 2.6.2 Biosynthesis of cofactors
[-]SW 2.6.2 Biosynthesis of cofactors
[+]SW 2.6.2.1 Biosynthesis/ acquisition of biotin
[-]SW 2.6.2.1 Biosynthesis/ acquisition of biotin
bioA | bioB | bioD | bioF | bioI | bioW | birA |
yhfU |
[+]SW 2.6.2.10 Biosynthesis of molybdopterin
[-]SW 2.6.2.10 Biosynthesis of molybdopterin
moaA | moaB | moaD | moaE | mobA | mobB | moeA |
moeB | ydiG |
[+]SW 2.6.2.11 Biosynthesis of NAD(P)
[-]SW 2.6.2.11 Biosynthesis of NAD(P)
nadA | nadB | nadC | nadD | nadE | nadF | nadR |
niaP | nifS | pncA | pncB | ytdI |
[+]SW 2.6.2.12 Biosynthesis of pyridoxal phosphate
[-]SW 2.6.2.12 Biosynthesis of pyridoxal phosphate
pdxK | pdxS | pdxT |
[+]SW 2.6.2.13 Biosynthesis/ acquisition of cobalamine (B12))
[-]SW 2.6.2.13 Biosynthesis/ acquisition of cobalamine (B12))
yvqK | yvrA | yvrB | yvrC |
[+]SW 2.6.2.2 Biosynthesis/ acquisition of riboflavin/ FAD
[-]SW 2.6.2.2 Biosynthesis/ acquisition of riboflavin/ FAD
ribA | ribC | ribD | ribE | ribH | ribU | ycsE |
yitU | ywtE |
[+]SW 2.6.2.3 Biosynthesis/ acquisition of thiamine
[-]SW 2.6.2.3 Biosynthesis/ acquisition of thiamine
dxs | tenA | tenI | thiC | thiD | thiE | thiF |
thiG | thiL | thiM | thiO | thiS | thiT | thiU |
thiV | thiW | thiX | ylmB | yloS |
[+]SW 2.6.2.4 Biosynthesis of coenzyme A
[-]SW 2.6.2.4 Biosynthesis of coenzyme A
coaA | coaX | panB | panC | panD | ylbQ | yloI |
ytaG |
[+]SW 2.6.2.5 Biosynthesis of folate
[-]SW 2.6.2.5 Biosynthesis of folate
dfrA | folB | folC | folE | folEB | folK | pabA |
pabB | pabC | sul |
[+]SW 2.6.2.6 Biosynthesis of heme/ siroheme
[-]SW 2.6.2.6 Biosynthesis of heme/ siroheme
ctaA | ctaB | ctaO | gsaB | hemA | hemB | hemC |
hemD | hemE | hemH | hemL | hemN | hemQ | hemX |
hemY | hemZ | sirB | ylnD | ylnF |
[+]SW 2.6.2.7 Biosynthesis and scavenging of lipoic acid
[-]SW 2.6.2.7 Biosynthesis and scavenging of lipoic acid
gcvH | lipA | lipL | lipM | lplJ |
[+]SW 2.6.2.8 Biosynthesis of menaquinone
[-]SW 2.6.2.8 Biosynthesis of menaquinone
hepS | hepT | menA | menB | menC | menD | menE |
menF | menH |
[+]SW 2.6.2.9 Biosynthesis of menaquinone/ based on similarity
[-]SW 2.6.2.9 Biosynthesis of menaquinone/ based on similarity
ytxM |
[+]SW 2.6.3 Phosphate metabolism
[-]SW 2.6.3 Phosphate metabolism
glpQ | phoA | phoB | phoD | phoP | phoR | phy |
pit | ppaC | pstA | pstBA | pstBB | pstC | pstS |
sapB | tatAD | tatCD | yqeW | yurI |
[+]SW 2.6.4 Sulfur metabolism
[-]SW 2.6.4 Sulfur metabolism
ascR | cmoI | cmoJ | cmoO | cymR | cysC | cysH |
cysI | cysJ | cysL | cysP | defB | mtrA | ribR |
sat | snaA | snaB | sndA | sndB | ssuA | ssuB |
ssuC | ssuD | yisZ | yitA | yitB | yxeK | yxeM |
yxeN | yxeO |
[+]SW 2.6.4.1 Conversion of S-methyl cysteine to cysteine
[-]SW 2.6.4.1 Conversion of S-methyl cysteine to cysteine
ascR | cmoI | cmoJ | cmoO | defB | ribR | snaA |
sndA |
[+]SW 2.6.4.2 sulfur metabolism/ general
[-]SW 2.6.4.2 sulfur metabolism/ general
cymR | cysC | cysH | cysI | cysJ | cysL | cysP |
mtrA | sat | ssuA | ssuB | ssuC | ssuD | yisZ |
yitA | yitB |
[+]SW 2.6.4.3 Conversion of S-(2-succino)cysteine to cysteine
[-]SW 2.6.4.3 Conversion of S-(2-succino)cysteine to cysteine
snaB | sndB | yxeK | yxeM | yxeN | yxeO |
[+]SW 2.6.5 Iron metabolism
[-]SW 2.6.5 Iron metabolism
[+]SW 2.6.5.1 Acquisition of iron / Other
[-]SW 2.6.5.1 Acquisition of iron / Other
besA | btr | cypX | dhbA | dhbB | dhbC | dhbE |
dhbF | dps | fbpA | fbpB | fbpC | fur | hmoA |
hmoB | mrgA | pchR | ybbA | yhfQ | ylaN | ymfD |
ytpQ | yvmC |
[+]SW 2.6.5.2 Acquisition of iron/ based on similarity
[-]SW 2.6.5.2 Acquisition of iron/ based on similarity
ytoA |
[+]SW 2.6.5.3 Biosynthesis of iron-sulfur clusters
[-]SW 2.6.5.3 Biosynthesis of iron-sulfur clusters
fra | sufA | sufB | sufC | sufD | sufS | sufU |
yitW |
[+]SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores
[-]SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores
fecC | fecD | fecE | fecF | feuA | feuB | feuC |
fhuB | fhuC | fhuD | fhuG | fpbN | fpbO | fpbP |
fpbQ | yfhA | yfiY | yfiZ | yhfQ | yusV | yxeB |
[+]SW 2.6.5.5 Elemental iron transport system
[-]SW 2.6.5.5 Elemental iron transport system
efeB | efeO | efeU |
[+]SW 2.6.6 Miscellaneous metabolic pathways
[-]SW 2.6.6 Miscellaneous metabolic pathways
[+]SW 2.6.6.1 Biosynthesis of antibacterial compounds
[-]SW 2.6.6.1 Biosynthesis of antibacterial compounds
[+]SW 2.6.6.2 Biosynthesis of bacillithiol
[-]SW 2.6.6.2 Biosynthesis of bacillithiol
bshA | bshB1 | bshB2 | bshC |
[+]SW 2.6.6.4 Biosynthesis of glycine betaine
[-]SW 2.6.6.4 Biosynthesis of glycine betaine
gbsA | gbsB | gbsR |
[+]SW 2.6.6.6 Metabolism of polyamines
[-]SW 2.6.6.6 Metabolism of polyamines
blt | bltD | bltR | paiA | speA | speB | speD |
speE |
[+]SW 2.6.6.7 Biosynthesis of rhamnose (for the exosporium)
[-]SW 2.6.6.7 Biosynthesis of rhamnose (for the exosporium)
spsI | spsJ | spsK | spsL |
[+]SW 2.6.6.8 Biosynthesis of legionaminic acid (for spore crust))
[-]SW 2.6.6.8 Biosynthesis of legionaminic acid (for spore crust))
spsC | spsD | spsE | spsG | yodU | ypqP |
[+]SW 2.7 Detoxification reactions
[-]SW 2.7 Detoxification reactions
catD | catE | cpgA | pncB | pxpA | pxpB | pxpC |
snaB | sndB | yabJ | yflK | yxeK |
[+]SW 3 Information processing
[-]SW 3 Information processing
[+]SW 3.1 Genetics
[-]SW 3.1 Genetics
[+]SW 3.1.1 DNA replication
[-]SW 3.1.1 DNA replication
dnaA | dnaB | dnaC | dnaD | dnaE | dnaG | dnaI |
dnaN | dnaX | exoR | holA | holB | ligA | ligB |
polA | polC | priA | recD2 | recJ | recQ | rnhB |
rnhC | rtp | sirA | ssbA | ssbB | topB | xtmA |
xtmB | yabA |
[+]SW 3.1.2 DNA replication/ based on similarity
[-]SW 3.1.2 DNA replication/ based on similarity
yorI | yorL | ypdQ |
[+]SW 3.1.3 DNA condensation/ segregation
[-]SW 3.1.3 DNA condensation/ segregation
codV | gyrA | gyrB | hbs | parA | parB | parC |
parE | ripX | scpA | scpB | sftA | smc | spoIIIE |
topA | topB | whiA |
[+]SW 3.1.4 DNA restriction/ modification
[-]SW 3.1.4 DNA restriction/ modification
mtbP | ydiO | ydiP | ydiR | ydiS | ydjA |
[+]SW 3.1.5 DNA repair/ recombination
[-]SW 3.1.5 DNA repair/ recombination
[+]SW 3.1.5.3 Spore-encoded non-homologous end joining system
[-]SW 3.1.5.3 Spore-encoded non-homologous end joining system
ligD | ykoV |
[+]SW 3.1.5.5 Oxidized guanine (GO) DNA repair system
[-]SW 3.1.5.5 Oxidized guanine (GO) DNA repair system
mutM | mutY | rppH |
[+]SW 3.1.5.6 Other proteins
[-]SW 3.1.5.6 Other proteins
[+]SW 3.1.6 DNA repair/ recombination/ based on similarity
[-]SW 3.1.6 DNA repair/ recombination/ based on similarity
aag | recJ | recQ | yefB | yefC | yfjP | yhaO |
yhaZ | yjcD | yjhB | yneB | yobH | yorK | yozK |
yozL | ypvA | yqxK |
[+]SW 3.1.7 Genetic competence
[-]SW 3.1.7 Genetic competence
[+]SW 3.1.8 Genetics/ other/ based on similarity
[-]SW 3.1.8 Genetics/ other/ based on similarity
bstC | hit | yonN | yorS | yqhH | yqiB | yqiC |
ytxK | ywqA |
[+]SW 3.1.9 Newly identified competence genes
[-]SW 3.1.9 Newly identified competence genes
cpgA | cysE | glyA | gpsA | greA | ndh | pdhB |
pdhC | pdxS | pdxT | pfkA | pgi | pgk | prmC |
ptsI | purB | pyrF | rplK | tpi | tsaC | yfhF |
yjlC | ykcB | yqhH | ytrA | ywlF |
[+]SW 3.2 RNA synthesis and degradation
[-]SW 3.2 RNA synthesis and degradation
[+]SW 3.2.1 Transcription
[-]SW 3.2.1 Transcription
greA | mfd | nusA | nusB | nusG | rho | rpoA |
rpoB | rpoC | rpoE | rpoY | rsoA | sigA | sigB |
sigD | sigE | sigF | sigG | sigH | sigI | sigK |
sigKC | sigL | sigM | sigO | sigV | sigW | sigX |
sigY | sigZ | xpf | ylaC | yloH | yonO |
[+]SW 3.2.1.2 Sigma factors
[-]SW 3.2.1.2 Sigma factors
rsoA | sigA | sigB | sigD | sigE | sigF | sigG |
sigH | sigI | sigK | sigKC | sigL | sigM | sigO |
sigV | sigW | sigX | sigY | sigZ | xpf | ylaC |
[+]SW 3.2.1.3 Transcription elongation/ termination
[-]SW 3.2.1.3 Transcription elongation/ termination
greA | mfd | nusA | nusB | nusG | rho |
[+]SW 3.2.4 RNases
[-]SW 3.2.4 RNases
eno | mrnC | nahA | ndoA | nrnA | nrnB | pnpA |
rimM | rnc | rnhB | rnhC | rnjA | rnjB | rnmV |
rnpA | rnpB | rnr | rny | rnz | rph | rppH |
SR7P | yaaT | yacP | yhaM | yhcR | ylbF | ymcA |
yqfG | yurI |
[+]SW 3.2.4.2 Endoribonucleases
[-]SW 3.2.4.2 Endoribonucleases
mrnC | ndoA | rnc | rnhB | rnhC | rnjB | rnmV |
rnpA | rny | rnz | yacP | yhcR | yqfG | yurI |
[+]SW 3.2.4.5 Effectors of RNA degradation
[-]SW 3.2.4.5 Effectors of RNA degradation
eno | SR7P | yaaT | ylbF | ymcA |
[+]SW 3.3 Protein synthesis, modification and degradation
[-]SW 3.3 Protein synthesis, modification and degradation
[+]SW 3.3.1 Translation
[-]SW 3.3.1 Translation
[+]SW 3.3.1.1 Ribosomal RNA
[-]SW 3.3.1.1 Ribosomal RNA
[+]SW 3.3.1.10 Aminoacyl-tRNA synthetases
[-]SW 3.3.1.10 Aminoacyl-tRNA synthetases
alaS | argS | asnS | aspS | cysS | gatA | gatB |
gatC | gltX | glyQ | glyS | hisS | hisZ | ileS |
leuS | lysS | metS | pheS | pheT | proS | serS |
thrS | thrZ | trpS | tyrS | tyrZ | valS | ytpR |
[+]SW 3.3.1.11 Translation factors
[-]SW 3.3.1.11 Translation factors
efp | frr | fusA | infA | infB | infC | prfA |
prfB | rbfA | tsf | tufA | ylaG |
[+]SW 3.3.1.12 Translation/ other
[-]SW 3.3.1.12 Translation/ other
brfA | deaD | defA | dtd | map | mifM | rqcH |
rsfS | smpB | spoVC | ssrA | yflG | yqeT |
[+]SW 3.3.1.13 Translation/ other/ based on similarity
[-]SW 3.3.1.13 Translation/ other/ based on similarity
prmC | yabO | ydiD | yjcK | ylxS | ynaD | yqeI |
[+]SW 3.3.1.14 Translation factor modification and maturation
[-]SW 3.3.1.14 Translation factor modification and maturation
gsaB | yaaO | yfkA | ymfI | ynbB | ywlG |
[+]SW 3.3.1.2 rRNA modification and maturation
[-]SW 3.3.1.2 rRNA modification and maturation
gidB | ksgA | mrnC | rimM | rlmCD | rluB | rnc |
rnmV | yacO | ypuI | yqeU | yqfG | ysgA |
[+]SW 3.3.1.3 rRNA modification and maturation/ based on similarity
[-]SW 3.3.1.3 rRNA modification and maturation/ based on similarity
yabC | yfjO | yhcT | yjbO | ylbH | yloM | yloN |
ylyB | ypsC | yqxC | yrrK | ytzG | ywbD | yydA |
[+]SW 3.3.1.4 Ribosomal proteins
[-]SW 3.3.1.4 Ribosomal proteins
[+]SW 3.3.1.5 Ribosomal protein/ based on similarity
[-]SW 3.3.1.5 Ribosomal protein/ based on similarity
rplGA | yfjL | ypfD |
[+]SW 3.3.1.6 Ribosome assembly
[-]SW 3.3.1.6 Ribosome assembly
cpgA | cshA | cshB | era | obg | prp | rbgA |
yaaA | yfmL | yphC | yqeH | ysxC |
[+]SW 3.3.1.7 tRNA
[-]SW 3.3.1.7 tRNA
[+]SW 3.3.1.8 tRNA modification and maturation
[-]SW 3.3.1.8 tRNA modification and maturation
cca | cspR | fmt | folD | folE | folEB | gidA |
miaA | nifZ | queA | queC | queD | queE | queF |
queG | rnpA | rnpB | rnz | rph | tgt | thdF |
thiI | tilS | tmcAL | trmB | trmD | trmFO | trmK |
trmN6 | trmR | trmU | truA | truB | tsaB | tsaC |
tsaD | tsaE | yaaJ | yacF | yfjN | yloN | ymcB |
yqeV | yrrN | yrrO | yrvM | yrvO |
[+]SW 3.3.1.9 tRNA modification and maturation/ based on similarity
[-]SW 3.3.1.9 tRNA modification and maturation/ based on similarity
yjdI |
[+]SW 3.3.2 Chaperones/ protein folding
[-]SW 3.3.2 Chaperones/ protein folding
bdbA | bdbB | bdbC | bdbD | dnaJ | dnaK | groEL |
groES | grpE | htpG | ppiB | tig |
[+]SW 3.3.3 Chaperone/ protein folding/ based on similarity
[-]SW 3.3.3 Chaperone/ protein folding/ based on similarity
yacC | yvdR | yvdS |
[+]SW 3.3.4 Protein modification
[-]SW 3.3.4 Protein modification
[+]SW 3.3.4.2 Protein kinases
[-]SW 3.3.4.2 Protein kinases
[+]SW 3.3.4.4 Protein phosphatases
[-]SW 3.3.4.4 Protein phosphatases
cheC | fliY | prpC | prpE | ptpZ | rapA | rapB |
rapC | rapD | rapE | rapF | rapG | rapH | rapI |
rapJ | rapK | rsbP | rsbU | rsbX | spo0E | spoIIE |
yfkJ | yisI | ywlE |
[+]SW 3.3.4.5 Protein acetylases/ deacetylases
[-]SW 3.3.4.5 Protein acetylases/ deacetylases
acuA | acuC | srtN | ydgE | yfmK |
[+]SW 3.3.4.6 Protein acetylase/ deacetylase/ based on similarity
[-]SW 3.3.4.6 Protein acetylase/ deacetylase/ based on similarity
ydiD | yjcK | ynaD |
[+]SW 3.3.4.8 Protein modification/ other
[-]SW 3.3.4.8 Protein modification/ other
cheR | comQ | gsaB | pcp | prmC | yaaO | yfkA |
ymfI | ynbB | yolJ | yqeT | ywlG | yydG |
[+]SW 3.3.5 Protein secretion
[-]SW 3.3.5 Protein secretion
[+]SW 3.3.6 Protein secretion/ based on similarity
[-]SW 3.3.6 Protein secretion/ based on similarity
yacD | yobE | yoqW |
[+]SW 3.3.7 Proteolysis
[-]SW 3.3.7 Proteolysis
aprE | bpr | clpC | clpE | clpP | clpQ | clpX |
clpY | ctpA | ctpB | ctsR | ddcP | epr | ftsH |
gpr | htpX | htrA | htrB | htrC | immA | ipi |
ispA | lonA | lonB | mecA | mlpA | mpr | nprB |
nprE | prp | prsW | rasP | spoIIGA | spoIVFB | tepA |
vpr | wprA | yabG | yirB | yjbH | ylzJ | ypbH |
ypwA | yqgP | yraA | yydH |
[+]SW 3.3.7.2 Extracellular feeding proteases
[-]SW 3.3.7.2 Extracellular feeding proteases
aprE | bpr | epr | mpr | nprB | nprE | vpr |
[+]SW 3.3.7.3 Proteolysis during sporulation/ germination
[-]SW 3.3.7.3 Proteolysis during sporulation/ germination
gpr | spoIIGA | spoIVFB | tepA | ylzJ |
[+]SW 3.3.7.4 Additional proteins involved in proteolysis
[-]SW 3.3.7.4 Additional proteins involved in proteolysis
clpC | clpE | clpP | clpQ | clpX | clpY | ctpA |
ctpB | ctsR | ddcP | ftsH | htpX | immA | ipi |
ispA | lonA | lonB | mecA | mlpA | prp | prsW |
rasP | yabG | yirB | yjbH | ypbH | ypwA | yqgP |
yraA | yydH |
[+]SW 3.4 Regulation of gene expression
[-]SW 3.4 Regulation of gene expression
[+]SW 3.4.1 Sigma factors and their control
[-]SW 3.4.1 Sigma factors and their control
[+]SW 3.4.1.1 Sigma factors
[-]SW 3.4.1.1 Sigma factors
rsoA | sigA | sigB | sigD | sigE | sigF | sigG |
sigH | sigI | sigK | sigKC | sigL | sigM | sigO |
sigV | sigW | sigX | sigY | sigZ | xpf | ylaC |