BSGatlas

Category

[-]SW 1 Cellular processes

aapA	aimA	albC	albD	alr	alsT	amiE
amj	appA/1	appA/2	appB	appC	appD	appF
araE	araN	araP	araQ	arsB	artP	artQ
artR	asd	aseA	azlC	azlD	bcaP	bceA
bceB	bcrC	besA	bglP	blt	blyA	bmr
bmrA	bmrC	bmrD	braB	brnQ	btr	cadA
capA	capB	capC	capE	chaA	cimH	citH
citM	clpC	copA	copZ	corA	cpaA	cpgA
csbB	csbC	csoR	cstA	cwlA	cwlC	cwlD
cwlH	cwlJ	cwlK	cwlO	cwlP	cwlQ	cwlS
cwlT	cydC	cydD	cypX	czcD	czcO	czrA
dacA	dacB	dacC	dacF	dapA	dapB	dapF
dapG	dat	dctP	ddcA	ddl	dgkA	dgkB
dhbA	dhbB	dhbC	dhbE	dhbF	disA	divIB
divIC	divIVA	dltA	dltB	dltC	dltD	dltE
dppB	dppC	dppD	dppE	dps	dtpT	dynA
ebrA	ebrB	ecsA	ecsB	efeB	efeO	efeU
epsK	exuT	ezrA	fabF	fbpA	fbpB	fbpC
fecC	fecD	fecE	fecF	feuA	feuB	feuC
fhuB	fhuC	fhuD	fhuG	fisB	floA	floT
fluC	fpbN	fpbO	fpbP	fpbQ	frlM	frlN
frlO	fruA	ftsA	ftsE	ftsH	ftsL	ftsW
ftsX	ftsZ	fur	gabP	gamA	gamP	gamR
ganP	ganS	gcaD	gerAB	gerBB	gerKB	ggaA
ggaB	ggt	glcP	glcU	glmM	glmR	glmS
glnH	glnM	glnP	glnQ	glnT	glpF	glpQ
glpT	gltP	gltT	gmuA	gmuB	gmuC	gntP
gpsB	gtaB	gtcA	gutP	hbuT	hmoA	hmoB
hutM	iolF	iolT	iseA	kdgT	khtS	khtT
khtU	kimA	ktrA	ktrB	ktrC	ktrD	lctP
ldcB	ldt	levD	levE	levF	levG	licA
licB	licC	lmrB	lnrL	lnrM	lnrN	lplA
lplB	lplC	ltaS	lutP	lytA	lytB	lytC
lytD	lytE	lytF	lytG	lytH	lytS	lytT
maeN	malP	manP	mbl	mciZ	mdr	mdtP
mdxE	mdxF	mdxG	melC	melD	melE	metN
metP	metQ	mgtE	minC	minD	minJ	mleN
mnaA	mneP	mneS	mntA	mntB	mntC	mntD
mntH	mntR	mpfA	mraY	mreB	mreBH	mreC
mreD	mrgA	mrpA	mrpB	mrpC	mrpD	mrpE
mrpF	mrpG	msmX	mtlA	mtlF	mtrA	murAA
murAB	murB	murC	murD	murE	murF	murG
murJ	murP	murQ	murR	nagA	nagB	nagP
nagZ	narK	nasA	natA	natB	natR	nhaC
nhaK	niaP	noc	nrgA	nupC	nupG	nupN
nupO	nupP	nupQ	oppA	oppB	oppC	oppD
oppF	opuAA	opuAB	opuAC	opuBA	opuBB	opuBC
opuCA	opuCB	opuCC	opuCD	opuD	opuE	patA
pbpA	pbpB	pbpC	pbpD	pbpE	pbpF	pbpG
pbpH	pbpI	pbpX	pbuE	pbuG	pbuO	pbuX
pchR	pdaA	pdaC	pfeT	pftA	pftB	pgcA
pgdS	pghB	pghC	pghL	pghZ	pit	plsX
ponA	psdA	psdB	pstA	pstBA	pstBB	pstC
pstS	ptsA	ptsG	ptsH	ptsI	pucI	pucJ
pucK	putP	pyrP	racA	racE	rasP	rbsA
rbsB	rbsC	rbsD	refZ	reoM	reoY	rhiF
rhiG	rhiL	ribU	rocC	rocE	rodA	rodZ
sacP	sacX	sepF	sftA	skfE	skfF	spoIID
spoIIM	spoIIP	spoVB	spoVD	spoVE	spoVG	spoVV
ssuA	ssuB	ssuC	steT	sufC	sunT	tagA
tagB	tagC	tagD	tagE	tagF	tagG	tagH
tagO	tagT	tagU	tagV	tcyA	tcyB	tcyC
tcyJ	tcyK	tcyL	tcyM	tcyN	tcyP	tetB
thiT	thiU	thiV	thiW	thiX	treP	trpP
tseB	tuaA/1	tuaA/2	tuaB	tuaC	tuaD	tuaE
tuaF	tuaG	tuaH	ugtP	uppS	walH	walI
walJ	walK	walR	wapA	whiA	wprA	xepA
xlyA	xlyB	xynP	yabE	yabM	ybaE	ybaF
ybaR	ybaS	ybbA	ybcL	ybfG	ybgF	ybxA
ybxG	ycbE	ycbK	ycbN	yccK	yceF	yceJ
ycgH	yciB	yckA	yckB	yclH	yclI	ycnB
ycnJ	ycnK	ycsG	ydbJ	ydbK	ydbO	yddS
ydeG	ydeR	ydgF	ydgH	ydgK	ydhB	ydhD
ydiF	ydjM	yecA	yetJ	yfhA	yfhI	yfhO
yfiB	yfiC	yfiG	yfiS	yfiU	yfiY	yfiZ
yfjQ	yfkF	yfkL	yfkT	yflA	yflS	yfmI
yfmM	yfmO	yfmR	yfnC	yfnI	ygaD	yhaP
yhaQ	yhcA	yhcE	yhcG	yhcH	yhcI	yhcJ
yhdT	yhdV	yhfQ	yhfU	yhjB	yhjP	yhjQ
yisK	yisQ	yitG	yjbB	yjkA	yjkB	yjmB
yjnA	yjoB	ykfB	ykfC	ykfD	ykkC	ykkD
yknU	yknV	yknY	yknZ	ykoY	ykpA	ykuQ
ykuR	ykvT	ylaN	ylbI	ylmD	yloB	ymfD
yndE	yneA	yngB	yoaB	yocH	yodF	yodL
yoeA	yojI	ypbE	ypdP	ypnP	yqeW	yqgS
yqgT	yqhB	yqiI	yraO	yrbD	yrhG	yrkA
yrkJ	yrpC	yrrL	yrrS	yrvJ	ytcP	ytcQ
yteP	ythP	ythQ	ytkC	ytlA	ytlC	ytlD
ytnA	ytnM	ytoA	ytpQ	ytrB	ytrC	ytrD
ytrE	ytrF	yuaF	yubA	yueF	yugO	yugS
yuiG	yunE	yurJ	yusV	yvaD	yvaE	yvbW
yvdR	yvdS	yveA	yvfR	yvfS	yvgJ	yvgK
yvgL	yvgM	yvmC	yvrA	yvrB	yvrC	yvrN
yvrO	yvsH	ywbA	ywcA	ywcJ	ywjA	ywrA
ywrB	yxdL	yxdM	yxeB	yxeM	yxeN	yxeO
yxlA	yxlF	yxlG	yybJ	yybK	yybL	yydI
yydJ	yyzE	zagA	zapA	zinT	znuA	znuB
znuC	zur

[-]SW 1.1 Cell envelope and cell division

alr	amiE	amj	asd	bcrC	blyA	capA
capB	capC	capE	clpC	cpgA	csbB	cwlA
cwlC	cwlD	cwlH	cwlJ	cwlK	cwlO	cwlP
cwlQ	cwlS	cwlT	dacA	dacB	dacC	dacF
dapA	dapB	dapF	dapG	dat	ddcA	ddl
dgkA	dgkB	disA	divIB	divIC	divIVA	dltA
dltB	dltC	dltD	dltE	dynA	ezrA	fabF
fisB	floA	floT	ftsA	ftsE	ftsH	ftsL
ftsW	ftsX	ftsZ	gamA	gamP	gamR	gcaD
ggaA	ggaB	ggt	glmM	glmR	glmS	glpQ
gpsB	gtaB	gtcA	iseA	ldcB	ldt	ltaS
lytA	lytB	lytC	lytD	lytE	lytF	lytG
lytH	lytS	lytT	mbl	mciZ	minC	minD
minJ	mnaA	mraY	mreB	mreBH	mreC	mreD
murAA	murAB	murB	murC	murD	murE	murF
murG	murJ	murP	murQ	murR	nagA	nagB
nagZ	noc	patA	pbpA	pbpB	pbpC	pbpD
pbpE	pbpF	pbpG	pbpH	pbpI	pbpX	pdaA
pdaC	pgcA	pgdS	pghB	pghC	pghL	pghZ
plsX	ponA	racA	racE	rasP	refZ	reoM
reoY	rodA	rodZ	sepF	sftA	spoIID	spoIIM
spoIIP	spoVB	spoVD	spoVE	spoVG	tagA	tagB
tagC	tagD	tagE	tagF	tagG	tagH	tagO
tagT	tagU	tagV	tseB	tuaA/1	tuaA/2	tuaB
tuaC	tuaD	tuaE	tuaF	tuaG	tuaH	ugtP
uppS	walH	walI	walJ	walK	walR	wapA
whiA	wprA	xepA	xlyA	xlyB	yabE	yabM
ybfG	yciB	ydhD	ydjM	yfhO	yfnI	yisK
yjoB	ykfB	ykfC	ykuQ	ykuR	ykvT	ylbI
ylmD	yneA	yngB	yocH	yodL	ypbE	yqgS
yqgT	yqiI	yrpC	yrrL	yrrS	yrvJ	ytkC
yuaF	yubA	yueF	yvgJ	zapA

[-]SW 1.1.1.2 Autolytic activity required for peptidoglycan synthesis (cell elongation)

[-]SW 1.1.1.3 Biosynthesis of lipoteichoic acid

csbB	dgkA	dgkB	ltaS	yfhO	yfnI	yqgS
yvgJ

[-]SW 1.1.1.4 Biosynthesis of teichoic acid

dltA	dltB	dltC	dltD	dltE	ggaA	ggaB
gtaB	gtcA	mnaA	pgcA	tagA	tagB	tagC
tagD	tagE	tagF	tagG	tagH	tagO

[-]SW 1.1.1.5 Biosynthesis of teichuronic acid

tuaA/1	tuaA/2	tuaB	tuaC	tuaD	tuaE	tuaF
tuaG	tuaH

[-]SW 1.1.1.6 Export of anionic polymers and attachment to peptidoglycan

[-]SW 1.1.1.7 Penicillin-binding proteins

dacA	dacB	dacC	dacF	pbpA	pbpB	pbpC
pbpD	pbpE	pbpF	pbpG	pbpH	pbpI	pbpX
ponA	spoVD

[-]SW 1.1.1.8 Biosynthesis of the carrier lipid undecaprenylphosphate

[-]SW 1.1.2 Cell shape

dynA	glmR	lytE	mbl	mreB	mreBH	mreC
mreD	pbpA	ponA	rodA	rodZ	ugtP	yubA
yueF

[-]SW 1.1.3.1 Autolysis

blyA	cwlA	cwlH	cwlK	cwlO	cwlP	cwlQ
cwlS	cwlT	iseA	lytA	lytB	lytC	lytD
lytE	lytF	lytG	lytS	lytT	pbpE	xepA
xlyA	xlyB	yocH

[-]SW 1.1.3.2 Autolysis/ based on similarity

[-]SW 1.1.3.3 Utilization of cell wall components

amiE	gamA	gamP	gamR	glpQ	murP	murQ
murR	nagA	nagB	nagZ	yqiI

[-]SW 1.1.3.4 Endopeptidases

[-]SW 1.1.3.5 N-acetyl-β-D-glucosaminidases

[-]SW 1.1.3.6 Cell wall degradation/ turnover/ Additional genes

[-]SW 1.1.4 Capsule biosynthesis and degradation

capA	capB	capC	capE	ggt	pgdS	pghB
pghC	pghL	pghZ

[-]SW 1.1.5 Cell wall/ other

clpC	cpgA	cwlC	cwlD	cwlJ	lytH	pdaA
pdaC	reoM	reoY	spoIID	spoIIM	spoIIP	walH
walI	walK	walR	wapA	wprA	ydjM	ykfB
ykfC	yqgT	yrrL

[-]SW 1.1.6 Cell wall/ other/ based on similarity

[-]SW 1.1.7 Membrane dynamics

[-]SW 1.1.8 Cell division

ddcA	disA	divIB	divIC	divIVA	dynA	ezrA
ftsA	ftsH	ftsL	ftsW	ftsZ	gpsB	mciZ
minC	minD	minJ	noc	pbpB	plsX	racA
rasP	refZ	sepF	sftA	spoVG	tseB	ugtP
walJ	whiA	yisK	yneA	yodL	ypbE	yrrS
zapA

[-]SW 1.1.8.1 The Min system

[-]SW 1.1.8.2 Other genes

ddcA	disA	divIB	divIC	divIVA	dynA	ezrA
ftsA	ftsH	ftsL	ftsW	ftsZ	gpsB	mciZ
noc	pbpB	plsX	racA	rasP	refZ	sepF
sftA	spoVG	tseB	ugtP	walJ	whiA	yisK
yneA	yodL	ypbE	yrrS	zapA

[-]SW 1.1.9 Cell division/ based on similarity

[-]SW 1.2 Transporters

aapA	aimA	albC	albD	alsT	appA/1	appA/2
appB	appC	appD	appF	araE	araN	araP
araQ	arsB	artP	artQ	artR	aseA	azlC
azlD	bcaP	bceA	bceB	bglP	blt	bmr
bmrA	bmrC	bmrD	braB	brnQ	cadA	chaA
cimH	citH	citM	copA	copZ	corA	csbC
cstA	cydC	cydD	czcD	dctP	dltB	dppB
dppC	dppD	dppE	dtpT	ebrA	ebrB	ecsA
ecsB	efeO	efeU	epsK	exuT	fecC	fecD
fecE	fecF	feuA	feuB	feuC	fhuB	fhuC
fhuD	fhuG	fluC	fpbN	fpbO	fpbP	fpbQ
frlM	frlN	frlO	fruA	ftsE	ftsX	gabP
gamP	ganP	ganS	gerAB	gerBB	gerKB	glcP
glcU	glnH	glnM	glnP	glnQ	glnT	glpF
glpT	gltP	gltT	gmuA	gmuB	gmuC	gntP
gutP	hbuT	hutM	iolF	iolT	kdgT	khtT
khtU	kimA	ktrA	ktrB	ktrC	ktrD	lctP
levD	levE	levF	levG	licA	licB	licC
lmrB	lnrL	lnrM	lnrN	lplA	lplB	lplC
lutP	maeN	malP	manP	mdr	mdtP	mdxE
mdxF	mdxG	melC	melD	melE	metN	metP
metQ	mgtE	mleN	mneP	mneS	mntA	mntB
mntC	mntD	mntH	mrpA	mrpB	mrpC	mrpD
mrpE	mrpF	mrpG	msmX	mtlA	mtlF	mtrA
murP	nagP	narK	nasA	natA	natB	nhaK
niaP	nrgA	nupC	nupG	nupN	nupO	nupP
nupQ	oppA	oppB	oppC	oppD	oppF	opuAA
opuAB	opuAC	opuBA	opuBB	opuBC	opuCA	opuCB
opuCC	opuCD	opuD	opuE	pbuE	pbuG	pbuO
pbuX	pfeT	pftA	pftB	pit	psdA	psdB
pstA	pstBA	pstBB	pstC	pstS	ptsA	ptsG
ptsH	ptsI	pucI	pucJ	pucK	putP	pyrP
rbsA	rbsB	rbsC	rbsD	rhiF	rhiG	rhiL
ribU	rocC	rocE	sacP	sacX	skfE	skfF
spoVV	ssuA	ssuB	ssuC	steT	sufC	sunT
tagG	tagH	tcyA	tcyB	tcyC	tcyJ	tcyK
tcyL	tcyM	tcyN	tcyP	tetB	thiT	thiU
thiV	thiW	thiX	treP	trpP	xynP	ybaE
ybaF	ybaR	ybaS	ybcL	ybgF	ybxA	ybxG
ycbE	ycbK	ycbN	yccK	yceJ	ycgH	yckA
yckB	yclH	yclI	ycnB	ycnJ	ycsG	ydbJ
ydbK	ydbO	yddS	ydeG	ydeR	ydgF	ydgH
ydgK	ydhB	ydiF	yecA	yfhA	yfhI	yfiB
yfiC	yfiG	yfiS	yfiU	yfiY	yfiZ	yfkF
yfkL	yfkT	yflA	yflS	yfmI	yfmM	yfmO
yfmR	yfnC	ygaD	yhaP	yhaQ	yhcA	yhcE
yhcG	yhcH	yhcI	yhcJ	yhdV	yhfQ	yhfU
yhjB	yhjP	yisQ	yitG	yjbB	yjkA	yjkB
yjmB	yjnA	ykfD	ykkC	ykkD	yknU	yknV
yknY	yknZ	ykpA	ymfD	yndE	yoaB	yodF
yoeA	yojI	ypdP	ypnP	yqeW	yraO	yrbD
yrhG	yrkJ	ytcP	ytcQ	yteP	ythP	ythQ
ytlA	ytlC	ytlD	ytnA	ytnM	ytrB	ytrC
ytrD	ytrE	ytrF	yuiG	yunE	yurJ	yusV
yvaD	yvaE	yvbW	yvdR	yvdS	yveA	yvfR
yvfS	yvgK	yvgL	yvgM	yvrA	yvrB	yvrC
yvrN	yvrO	yvsH	ywbA	ywcA	ywcJ	ywjA
ywrA	ywrB	yxdL	yxdM	yxeB	yxeM	yxeN
yxeO	yxlA	yxlF	yxlG	yybJ	yybK	yybL
yydI	yydJ	yyzE	znuA	znuB	znuC

[-]SW 1.2.1 ABC transporters

albC	albD	appA/1	appA/2	appB	appC	appD
appF	araN	araP	araQ	artP	artQ	artR
bceA	bceB	bmrA	bmrC	bmrD	cydC	cydD
dppB	dppC	dppD	dppE	ecsA	ecsB	fecC
fecD	fecE	fecF	feuA	feuB	feuC	fhuB
fhuC	fhuD	fhuG	fpbN	fpbO	fpbP	fpbQ
frlM	frlN	frlO	ftsE	ftsX	ganP	ganS
glnH	glnM	glnP	glnQ	lnrL	lnrM	lnrN
lplA	lplB	lplC	mdxE	mdxF	mdxG	melC
melD	melE	metN	metP	metQ	mntA	mntB
mntC	mntD	msmX	natA	natB	nupN	nupO
nupP	nupQ	oppA	oppB	oppC	oppD	oppF
opuAA	opuAB	opuAC	opuBA	opuBB	opuBC	opuCA
opuCB	opuCC	opuCD	psdA	psdB	pstA	pstBA
pstBB	pstC	pstS	rbsA	rbsB	rbsC	rbsD
rhiF	rhiG	rhiL	skfE	skfF	ssuA	ssuB
ssuC	sufC	sunT	tagG	tagH	tcyA	tcyB
tcyC	tcyJ	tcyK	tcyL	tcyM	tcyN	ycbN
yckA	yckB	yclH	yclI	ydbJ	ydbK	ydiF
yfhA	yfiB	yfiC	yfiY	yfiZ	yfmM	yfmR
ygaD	yhaP	yhaQ	yhcE	yhcG	yhcH	yhcI
yhcJ	yhfQ	yhjP	yjkA	yjkB	ykfD	yknU
yknV	yknY	yknZ	ykpA	ytcP	ytcQ	yteP
ythP	ythQ	ytlA	ytlC	ytlD	ytrB	ytrC
ytrD	ytrE	ytrF	yurJ	yusV	yvfR	yvfS
yvgL	yvgM	yvrA	yvrB	yvrC	yvrN	yvrO
ywjA	yxdL	yxdM	yxeB	yxeM	yxeN	yxeO
yxlF	yxlG	yybJ	yybK	yybL	yydI	yydJ
znuA	znuB	znuC

[-]SW 1.2.1.1.2 Uptake of amino acids

artP	artQ	artR	glnH	glnM	glnP	glnQ
metN	metP	metQ	tcyA	tcyB	tcyC	tcyJ
tcyK	tcyL	tcyM	tcyN	yxeM	yxeN	yxeO

[-]SW 1.2.1.1.3 Uptake of peptides

appA/1	appA/2	appB	appC	appD	appF	dppB
dppC	dppD	dppE	oppA	oppB	oppC	oppD
oppF	ykfD

[-]SW 1.2.1.1.4 Uptake of compatible solutes for osmoprotection

opuAA	opuAB	opuAC	opuBA	opuBB	opuBC	opuCA
opuCB	opuCC	opuCD

[-]SW 1.2.1.1.5 Uptake of iron/ siderophores

fecC	fecD	fecE	fecF	feuA	feuB	feuC
fhuB	fhuC	fhuD	fhuG	fpbN	fpbO	fpbP
fpbQ	yfhA	yfiY	yfiZ	yhfQ	yusV	yxeB

[-]SW 1.2.1.1.6 Uptake of ions

mntA	mntB	mntC	mntD	pstA	pstBA	pstBB
pstC	pstS	ssuA	ssuB	ssuC	yvgL	yvgM
znuA	znuB	znuC

[-]SW 1.2.1.1.7 Uptake of cofactors

[-]SW 1.2.1.2.1 Efflux of antibiotics

[-]SW 1.2.1.2.2 Export of antibiotic substances

[-]SW 1.2.1.2.3 Export of peptides

bceA	bceB	psdA	psdB	skfE	skfF	yknY
yknZ	yxdL	yxdM	yxlF	yxlG	yydI	yydJ

[-]SW 1.2.1.2.4 Export of cell wall components

[-]SW 1.2.1.2.5 Export of ions

[-]SW 1.2.1.2.6 Exporters of unknown function

ycbN	yclH	yclI	ydbJ	ydbK	yfiB	yfiC
ygaD	yhaP	yhaQ	yhcE	yhcG	yhcH	yhcI
yknU	yknV	ythP	ythQ	yvfR	yvfS	yvrN
yvrO	ywjA	yybJ	yybK	yybL

[-]SW 1.2.1.3 Regulatory ABC transporters

bmrC	bmrD	cydC	cydD	ecsA	ecsB	ftsE
ftsX	sufC

[-]SW 1.2.1.4 Unknown ABC transporters

lplA	lplB	lplC	yckA	yckB	ydiF	yfmM
yfmR	yhcJ	yhjP	yjkA	yjkB	ykpA	ytlA
ytlC	ytlD	ytrB	ytrC	ytrD	ytrE	ytrF

[-]SW 1.2.2 Phosphotransferase system

bglP	fruA	gamP	gmuA	gmuB	gmuC	levD
levE	levF	levG	licA	licB	licC	malP
manP	mtlA	mtlF	murP	nagP	ptsA	ptsG
ptsH	ptsI	sacP	sacX	treP	ywbA	yyzE

[-]SW 1.2.2.1 General PTS proteins

[-]SW 1.2.2.2 Sugar specific PTS proteins

bglP	fruA	gamP	gmuA	gmuB	gmuC	levD
levE	levF	levG	licA	licB	licC	malP
manP	mtlA	mtlF	murP	nagP	ptsA	ptsG
sacP	sacX	treP	ywbA	yyzE

[-]SW 1.2.3 ECF transporter

ribU	thiT	thiU	thiV	thiW	thiX	trpP
ybaE	ybaF	ybxA	yhfU	yuiG

[-]SW 1.2.3.1 The general components of the ECF transporters

[-]SW 1.2.3.2 The substrate-specific S components of the ECF transporters

[-]SW 1.2.3.3 Class I ECF transporter

[-]SW 1.2.4.1.1 Solute:sodium symporter family

[-]SW 1.2.4.1.3 Alanine or glycine cation symporter family

[-]SW 1.2.4.1.4 APC superfamily

aapA	aimA	bcaP	gabP	gerAB	gerBB	gerKB
hutM	rocC	rocE	steT	ybgF	ybxG	ycgH
ydgF	yecA	yfkT	yndE	ytnA	yvbW	yveA
yvsH

[-]SW 1.2.4.1.5 BCAA transporters

[-]SW 1.2.4.1.6 Dicarboxylate/amino acid:cation symporter

[-]SW 1.2.4.1.7 Sodium-solute symporter

[-]SW 1.2.4.1.8 Additional amino acid transporters

[-]SW 1.2.4.10 Siderophore exporters

[-]SW 1.2.4.11 Other exporters

blt	bmr	epsK	fluC	mdr	mneS	narK
ycnB	yhcA	yhdV	ykkC	ykkD	ywrA	ywrB

[-]SW 1.2.4.13 Metal ion exporters

[-]SW 1.2.4.14 Multidrug exporters

[-]SW 1.2.4.15 Multidrug exporters/ based on homology

[-]SW 1.2.4.2 Peptide transporter

[-]SW 1.2.4.3 Carbohydrate transporter

araE	exuT	glcP	glcU	glpF	glpT	gntP
gutP	iolF	iolT	kdgT	mdtP	xynP	ycbE
yfiG	yjmB

[-]SW 1.2.4.4 Transporter for organic acids

cimH	citH	citM	dctP	gabP	hbuT	lctP
lutP	maeN	mleN	pftA	pftB	ybaR	yflS
yoaB	yraO	yrhG

[-]SW 1.2.4.5 Metal ion transporter

arsB	aseA	cadA	chaA	copA	copZ	corA
czcD	efeO	efeU	khtT	khtU	kimA	ktrA
ktrB	ktrC	ktrD	mgtE	mntH	mrpA	mrpB
mrpC	mrpD	mrpE	mrpF	mrpG	nhaK	pfeT
ycnJ

[-]SW 1.2.4.6 Nucleotide/ nucleoside transporter

nupC	nupG	pbuE	pbuG	pbuO	pbuX	pucI
pucJ	pucK	pyrP	yxlA

[-]SW 1.2.4.7 Transporter for cofactors

[-]SW 1.2.4.8 Uptake of other small ions

[-]SW 1.2.4.9 Uptake of compatible solutes

[-]SW 1.3.1.1 Magnesium uptake/ efflux

citM	mgtE	mpfA	yfjQ	yhdT	yqhB	yrkA
yugS

[-]SW 1.3.1.2 Sodium uptake/ export

mrpA	mrpB	mrpC	mrpD	mrpE	mrpF	mrpG
natA	natB	natR	nhaC	nhaK

[-]SW 1.3.1.3 Potassium uptake/ export

cpaA	khtS	khtT	khtU	kimA	ktrA	ktrB
ktrC	ktrD	yugO

[-]SW 1.3.1.4 Metal ion homeostasis/ Other

[-]SW 1.3.2.1 Copper

[-]SW 1.3.2.2 Manganese

mneP	mneS	mntA	mntB	mntC	mntD	mntH
mntR	yceF	ykoY

[-]SW 1.3.2.3 Zinc

czcD	czrA	zagA	zinT	znuA	znuB	znuC
zur

[-]SW 1.3.2.4 Trace metals/ Other

[-]SW 1.3.3.2 Elemental iron transport system

[-]SW 1.3.3.3 Acquisition of iron / Other

besA	btr	cypX	dhbA	dhbB	dhbC	dhbE
dhbF	dps	fbpA	fbpB	fbpC	fur	hmoA
hmoB	mrgA	pchR	ybbA	yhfQ	ylaN	ymfD
ytpQ	yvmC

[-]SW 1.3.4 Acquisition of iron/ based on similarity

[-]SW 1.3.5 PH homeostasis

[-]SW 2 Metabolism

abf2	abfA	abn2	abnA	accA	accB	accC
accD	acdA	ackA	acoA	acoB	acoC	acoL
acoR	acpA	acpK	acpS	acsA	acuA	acuC
adeC	adeR	adk	ahpA	ahrC	aimA	alaT
albA	albB	albC	albD	albE	albF	albG
ald	alr	alsD	alsR	alsS	alsT	amj
amyE	amyX	ansA	ansB	ansR	ansZ	appB
appC	appD	appF	aprE	aprX	apt	araA
araB	araD	araE	araN	araP	araQ	araR
arfM	argB	argC	argD	argF	argG	argH
argJ	aroA	aroB	aroC	aroD	aroE	aroF
aroH	aroK	artP	artQ	artR	ascR	asd
asnB	asnH	asnO	aspB	atpA	atpB	atpC
atpD	atpE	atpF	atpG	atpH	atpI	azlB
azlC	azlD	bacA	bacB	bacC	bacD	bacE
bacF	bacG	bcaP	bcd	bcrC	bdhA	besA
bglA	bglC	bglH	bglP	bglS	bioA	bioB
bioD	bioF	bioI	bioW	birA	bkdAA	bkdAB
bkdB	bkdR	blt	bltD	bltR	bpr	bpsA
bpsB	braB	brnQ	bshA	bshB1	bshB2	bshC
btr	buk	carA	carB	catD	catE	cccA
cccB	ccdA	ccpC	ccpN	cdaA	cdaR	cdaS
cdd	cdsA	cggR	cimH	citB	citG	citH
citM	citS	citT	citZ	clsA	cmk	cmoI
cmoJ	cmoO	coaA	coaX	cotR	cpgA	csbB
csn	cstA	ctaA	ctaB	ctaC	ctaD	ctaE
ctaF	ctaG	ctaO	cydA	cydB	cydC	cydD
cymR	cypA	cypC	cypX	cysC	cysE	cysH
cysI	cysJ	cysK	cysL	cysP	dapA	dapB
dapF	dapG	dat	dck	dctB	dctP	dctR
dctS	ddl	defB	degV	deoD	deoR	des
desK	desR	dfrA	dgcK	dgcP	dgcW	dgk
dgkA	dgkB	dhbA	dhbB	dhbC	dhbE	dhbF
disA	dltA	dltB	dltC	dltD	dltE	dppA
dppB	dppC	dppD	dppE	dps	dra	drm
dtpT	dxs	efeB	efeO	efeU	eno	epr
etfA	etfB	exuR	exuT	fabD	fabF	fabG
fabHA	fabHB	fabI	fabL	fadA	fadB	fadE
fadF	fadG	fadH	fadM	fadN	fadR	fakA
fapR	fatR	fbaA	fbp	fbpA	fbpB	fbpC
fecC	fecD	fecE	fecF	fer	feuA	feuB
feuC	fhuB	fhuC	fhuD	fhuG	fni	fnr
folB	folC	folE	folEB	folK	fpbN	fpbO
fpbP	fpbQ	fra	frlB	frlD	frlM	frlN
frlO	frlR	fruA	fruC	fruK	fruR	fur
gabD	gabP	gabR	gabT	galE	galK	galM
galT	gamA	gamP	gamR	ganA	ganB	ganP
ganQ	ganR	ganS	gapA	gapB	gbsA	gbsB
gbsR	gcaD	gcvH	gcvPA	gcvPB	gcvT	gdpP
ggaA	ggaB	glcK	glcT	glgA	glgB	glgC
glgD	glgP	glmM	glmR	glmS	glnA	glnH
glnK	glnL	glnM	glnP	glnQ	glnR	glnT
glpD	glpF	glpK	glpP	glpQ	glpT	glpX
glsA	gltA	gltB	gltC	gltT	glvR	glyA
gmk	gmuA	gmuB	gmuC	gmuD	gmuE	gmuF
gmuG	gmuR	gndA	gntK	gntP	gntR	gntZ
gpsA	gsaB	gtaB	gtcA	guaA	guaB	guaC
guaD	gudB	gutB	gutP	gutR	hemA	hemB
hemC	hemD	hemE	hemH	hemL	hemN	hemQ
hemX	hemY	hemZ	hepS	hepT	hisA	hisB
hisC	hisD	hisF	hisG	hisH	hisI	hisJ
hmoA	hmoB	hmp	hom	hprT	hutG	hutH
hutI	hutM	hutP	hutU	hypO	icd	ilvA
ilvB	ilvC	ilvD	ilvH	iolA	iolB	iolC
iolD	iolE	iolF	iolG	iolH	iolI	iolJ
iolQ	iolR	iolS	iolT	iolU	iolW	iolX
ispA	ispC	ispD	ispE	ispF	ispG	ispH
kbl	kdgA	kdgK	kdgR	kdgT	kduD	kduI
lcfA	lcfB	lctP	ldcB	ldh	ldt	leuA
leuB	leuC	leuD	levB	levD	levE	levF
levG	levR	licA	licB	licC	licH	licR
licT	lip	lipA	lipB	lipC	lipL	lipM
lpdV	lplD	lplJ	ltaS	lutA	lutB	lutC
lutP	lutR	luxS	lysA	lysC	maa	maeA
maeN	malA	malK	malL	malP	malR	malS
manA	manP	manR	mccA	mccB	mdh	mdxE
mdxF	mdxG	melA	melC	melD	melE	melR
menA	menB	menC	menD	menE	menF	menH
metA	metC	metE	metI	metK	metN	metP
metQ	mgsA	mleA	mleN	mmgA	mmgB	mmgC
mmgD	mmgE	mmgF	mnaA	moaA	moaB	moaD
moaE	mobA	mobB	moeA	moeB	mpr	mprF
mraY	mrgA	msmX	mtlA	mtlD	mtlF	mtlR
mtnA	mtnB	mtnD	mtnE	mtnK	mtnN	mtnU
mtnW	mtnX	mtrA	mtrB	murAA	murAB	murB
murC	murD	murE	murF	murG	murJ	murP
murQ	murR	nadA	nadB	nadC	nadD	nadE
nadF	nadR	nagA	nagB	nagP	nagR	nahA
nap	narG	narH	narI	narJ	narK	nasA
nasB	nasC	nasD	nasE	nasF	ndh	ndhF
ndk	nfrA	niaP	nifS	nos	nprB	nprE
nrdE	nrdEB	nrdEB	nrdF	nrdI	nrgA	nrgB
ntdA	ntdB	ntdC	ntdR	nucB	nudF	nupC
nupG	nupN	nupO	nupP	nupQ	odhA	odhB
oppA	oppB	oppC	oppD	oppF	pabA	pabB
pabC	paiA	panB	panC	panD	papA	papB
patA	patB	pbuE	pbuG	pbuO	pbuX	pckA
pcrB	pdeH	pdhA	pdhB	pdhC	pdhD	pdp
pdxK	pdxS	pdxT	pel	pelB	pelC	pepT
pfeT	pfkA	pftA	pftB	pgcA	pgcM	pgi
pgk	pgm	pgpB	pgpH	pgsA	pheA	phoA
phoB	phoD	phoP	phoR	phy	pit	pksB
pksC	pksD	pksE	pksF	pksG	pksH	pksI
pksJ	pksL	pksM	pksN	pksR	pksS	plsC
plsX	plsY	pmi	pnbA	pncA	pncB	ppaC
ppsA	ppsB	ppsC	ppsD	ppsE	proA	proB
proG	proH	proI	proJ	prs	psd	pssA
pstA	pstBA	pstBB	pstC	pstS	pta	ptb
ptsG	pucA	pucB	pucC	pucD	pucE	pucF
pucG	pucH	pucI	pucJ	pucK	pucL	pucM
pucR	pupG	purA	purB	purC	purD	purE
purF	purH	purK	purL	purM	purN	purQ
purR	purS	purT	putB	putC	putP	putR
pxpA	pxpB	pxpC	pycA	pyk	pyrAA	pyrAB
pyrB	pyrC	pyrD	pyrE	pyrF	pyrG	pyrH
pyrK	pyrP	pyrR	qcrA	qcrB	qcrC	qoxA
qoxB	qoxC	qoxD	racE	radA	rbsA	rbsB
rbsC	rbsD	rbsK	rbsR	relA	resA	resB
resC	resD	resE	rex	rhaA	rhaB	rhaEW
rhaM	rhaR	rhgR	rhiF	rhiG	rhiL	rhiN
ribA	ribC	ribD	ribE	ribH	ribR	ribU
rnr	rocA	rocB	rocC	rocD	rocE	rocF
rocG	rocR	rpe	rtpA	sacA	sacB	sacC
sacP	sacT	sacX	sacY	sapB	sasA	sasB
sat	sboA	sboX	sco	scoA	scoB	sdaAA
sdaAB	sdhA	sdhB	sdhC	senS	serA	serB
serC	sfp/1	sfp/2	sirB	snaA	snaB	sndA
sndB	speA	speB	speD	speE	spoVB	spoVE
spoVFA	spoVFB	spsC	spsD	spsE	spsG	spsI
spsJ	spsK	spsL	sr1	srfAA	srfAB	srfAC
srfAD	ssuA	ssuB	ssuC	ssuD	sucC	sucD
sufA	sufB	sufC	sufD	sufS	sufU	sul
sunA	sunT	tagA	tagB	tagC	tagD	tagE
tagF	tagG	tagH	tagO	tatAD	tatCD	tcyA
tcyB	tcyC	tcyJ	tcyK	tcyL	tcyM	tcyN
tcyP	tdh	tdk	tenA	tenI	thiC	thiD
thiE	thiF	thiG	thiL	thiM	thiO	thiS
thiT	thiU	thiV	thiW	thiX	thrB	thrC
thrD	thrR	thyA	thyB	tkt	tlp	tmk
tnrA	tpi	treA	treP	treR	trpA	trpB
trpC	trpD	trpE	trpF	trpP	trxA	trxB
tuaA/1	tuaA/2	tuaB	tuaC	tuaD	tuaE	tuaF
tuaG	tuaH	tyrA	udk	ugtP	upp	uppS
ureA	ureB	ureC	uxaA	uxaB	uxaC	uxuA
vpr	walJ	xpt	xylA	xylB	xylR	xynA
xynB	xynC	xynD	xynP	yabJ	yabM	ybaR
ybbA	ybcM	ybfK	ybgE	ybgG	ybxG	ycbC
ycbD	ycbE	ycbF	ycbG	ycbH	ycgT	yciB
yckE	ycnB	ycnD	ycsD	ycsE	ydaE	ydbP
ydeQ	ydfQ	ydiG	yesT	yesV	yesW	yesX
yesY	yesZ	yetA	yetO	yfhA	yfhO	yfiG
yfiY	yfiZ	yfkN	yflK	yflS	yfnI	yhcA
yhcR	yhdN	yhdW	yhfQ	yhfR	yhfU	yhfW
yisP	yisZ	yitA	yitB	yitJ	yitS	yitU
yitW	yjcG	yjgC	yjiB	yjmB	yjmC	yjmD
yjmF	ykfD	ykgB	ykkE	ykuN	ykuP	ykuQ
ykuR	ylaM	ylaN	ylbQ	ylmB	ylmD	ylnD
ylnF	yloI	yloS	ymfD	yncF	yneN	yngE
yngF	yngG	yngH	yngHB	yngI	yngJ	yoaB
yoaD	yoaE	yoaV	yodC	yodF	yodU	yojN
yolJ	yosR	yosS	ypgQ	ypqP	yqeK	yqeW
yqfL	yqgS	yqhY	yqiD	yqiK	yraO	yrbD
yrhJ	yrkL	yrpC	ysdC	ytaG	ytcP	ytcQ
ytdI	yteP	yteR	ythA	ythB	ytlP	ytnA
ytoA	ytpP	ytpQ	ytsJ	ytxM	yugT	yumC
yurI	yurJ	yusE	yusV	yutJ	yutK	yvbV
yvdE	yvdF	yvdK	yveA	yvgJ	yvmC	yvqK
yvrA	yvrB	yvrC	yvsH	ywaA	ywcJ	ywiE
ywjE	ywjH	ywlF	ywpB	ywrO	ywtE	yxeB
yxeK	yxeM	yxeN	yxeO	yxjG	yxjH	yxlA
yyaE	yydF	yydG	yydH	yydI	yydJ	zwf

[-]SW 2.1.1 Regulators of electron transport

[-]SW 2.1.2 Respiration

cccA	cccB	ccdA	ctaC	ctaD	ctaE	ctaF
ctaG	cydA	cydB	cydC	cydD	narG	narH
narI	narJ	narK	nasD	nasE	nasF	ndh
ndhF	qcrA	qcrB	qcrC	qoxA	qoxB	qoxC
qoxD	resA	resB	resC	sco	yojN	ythA
ythB	ywcJ

[-]SW 2.1.2.1 Terminal oxidases

ctaC	ctaD	ctaE	ctaF	ctaG	cydA	cydB
cydC	cydD	qoxA	qoxB	qoxC	qoxD	sco
ythA	ythB

[-]SW 2.1.2.2 Anaerobic respiration

narG	narH	narI	narJ	narK	nasD	nasE
nasF	ywcJ

[-]SW 2.1.2.3 Anaerobic respiration/based on similarity

[-]SW 2.1.2.4 Respiration/ other

cccA	cccB	ccdA	ndh	ndhF	qcrA	qcrB
qcrC	resA	resB	resC

[-]SW 2.1.3 Electron transport/ other

cypC	etfA	etfB	fatR	fer	hmp	nfrA
tlp	trxA	trxB	ycnD	yetO	yjiB	ykuN
ykuP	yosR	yrhJ	yumC

[-]SW 2.1.4 Electron transport/ other/ based on similarity

ahpA	cypA	hypO	ycgT	ydbP	ydeQ	ydfQ
yhfW	yjgC	yneN	yoaE	yodC	yrkL	ytpP
yusE	yutJ	ywrO	yyaE

[-]SW 2.1.5 ATP synthesis

ackA	atpA	atpB	atpC	atpD	atpE	atpF
atpG	atpH	atpI	pgk	sucC	sucD

[-]SW 2.1.5.1 ATPase

atpA	atpB	atpC	atpD	atpE	atpF	atpG
atpH	atpI

[-]SW 2.1.5.2 Substrate-level phosphorylation

[-]SW 2.2 Carbon metabolism

abf2	abfA	abn2	abnA	ackA	acoA	acoB
acoC	acoL	acoR	acsA	acuA	acuC	alsD
alsR	alsS	amyE	amyX	araA	araB	araD
araE	araN	araP	araQ	araR	bdhA	bglA
bglC	bglH	bglP	bglS	ccpC	ccpN	cggR
cimH	citB	citG	citH	citM	citS	citT
citZ	csn	cstA	dctB	dctP	dctR	dctS
eno	exuR	exuT	fbaA	fbp	frlB	frlD
frlM	frlN	frlO	frlR	fruA	fruC	fruK
fruR	galE	galK	galM	galT	gamA	gamP
gamR	ganA	ganB	ganP	ganQ	ganR	ganS
gapA	gapB	glcK	glcT	glpD	glpF	glpK
glpP	glpQ	glpT	glpX	glvR	gmuA	gmuB
gmuC	gmuD	gmuE	gmuF	gmuG	gmuR	gndA
gntK	gntP	gntR	gntZ	gutB	gutP	gutR
icd	iolA	iolB	iolC	iolD	iolE	iolF
iolG	iolH	iolI	iolJ	iolQ	iolR	iolS
iolT	iolU	iolW	iolX	kdgA	kdgK	kdgR
kdgT	kduD	kduI	lctP	ldh	levB	levD
levE	levF	levG	levR	licA	licB	licC
licH	licR	licT	lplD	lutA	lutB	lutC
lutP	lutR	maa	maeA	maeN	malA	malK
malL	malP	malR	malS	manA	manP	manR
mdh	mdxE	mdxF	mdxG	melA	melC	melD
melE	melR	mgsA	mleA	mleN	msmX	mtlA
mtlD	mtlF	mtlR	murP	murQ	murR	nagA
nagB	nagP	nagR	odhA	odhB	pckA	pdhA
pdhB	pdhC	pdhD	pel	pelB	pelC	pfkA
pftA	pftB	pgcM	pgi	pgk	pgm	pmi
pta	ptsG	pycA	pyk	rbsA	rbsB	rbsC
rbsD	rbsK	rbsR	rex	rhaA	rhaB	rhaEW
rhaM	rhaR	rhgR	rhiF	rhiG	rhiL	rhiN
rpe	sacA	sacB	sacC	sacP	sacT	sacX
sacY	sdhA	sdhB	sdhC	senS	sucC	sucD
tkt	tpi	treA	treP	treR	uxaA	uxaB
uxaC	uxuA	xylA	xylB	xylR	xynA	xynB
xynC	xynD	xynP	ybaR	ybcM	ycbC	ycbD
ycbE	ycbF	ycbG	ycbH	yckE	ydaE	yesT
yesV	yesW	yesX	yesY	yesZ	yetA	yfiG
yflS	yjmB	yjmC	yjmD	yjmF	ykgB	yoaB
yqfL	yraO	ysdC	ytcP	ytcQ	yteP	yteR
ytsJ	yugT	yurJ	yvdE	yvdF	yvdK	ywjH
ywlF	zwf

[-]SW 2.2.1.1 Glycolysis

cggR	eno	fbaA	gapA	glcT	mgsA	pfkA
pgi	pgk	pgm	ptsG	pyk	tpi

[-]SW 2.2.1.2 Gluconeogenesis

ccpN	eno	fbaA	fbp	gapB	glpX	pckA
pgi	pgk	pgm	tpi	yqfL

[-]SW 2.2.1.3 Pentose phosphate pathway

[-]SW 2.2.1.4 TCA cycle

ccpC	citB	citG	citZ	icd	mdh	odhA
odhB	pdhA	pdhB	pdhC	pdhD	pycA	sdhA
sdhB	sdhC	sucC	sucD

[-]SW 2.2.1.5 Overflow metabolism

ackA	alsD	alsR	alsS	bdhA	lctP	ldh
pta	rex

[-]SW 2.2.2 Utilization of specific carbon sources

abf2	abfA	abn2	abnA	acoA	acoB	acoC
acoL	acoR	acsA	acuA	acuC	amyE	amyX
araA	araB	araD	araE	araN	araP	araQ
araR	bglA	bglC	bglH	bglP	bglS	cimH
citH	citM	citS	citT	csn	cstA	dctB
dctP	dctR	dctS	exuR	exuT	frlB	frlD
frlM	frlN	frlO	frlR	fruA	fruC	fruK
fruR	galE	galK	galM	galT	gamA	gamP
gamR	ganA	ganB	ganP	ganQ	ganR	ganS
glcK	glpD	glpF	glpK	glpP	glpQ	glpT
glvR	gmuA	gmuB	gmuC	gmuD	gmuE	gmuF
gmuG	gmuR	gntK	gntP	gntR	gntZ	gutB
gutP	gutR	iolA	iolB	iolC	iolD	iolE
iolF	iolG	iolH	iolI	iolJ	iolQ	iolR
iolS	iolT	iolU	iolW	iolX	kdgA	kdgK
kdgR	kdgT	kduD	kduI	levB	levD	levE
levF	levG	levR	licA	licB	licC	licH
licR	licT	lplD	lutA	lutB	lutC	lutP
lutR	maa	maeA	maeN	malA	malK	malL
malP	malR	malS	manA	manP	manR	mdxE
mdxF	mdxG	melA	melC	melD	melE	melR
mleA	mleN	msmX	mtlA	mtlD	mtlF	mtlR
murP	murQ	murR	nagA	nagB	nagP	nagR
pel	pelB	pelC	pftA	pftB	pgcM	pmi
rbsA	rbsB	rbsC	rbsD	rbsK	rbsR	rhaA
rhaB	rhaEW	rhaM	rhaR	rhgR	rhiF	rhiG
rhiL	rhiN	sacA	sacB	sacC	sacP	sacT
sacX	sacY	senS	treA	treP	treR	uxaA
uxaB	uxaC	uxuA	xylA	xylB	xylR	xynA
xynB	xynC	xynD	xynP	ybaR	ybcM	ycbC
ycbD	ycbE	ycbF	ycbG	ycbH	yckE	ydaE
yesT	yesV	yesW	yesX	yesY	yesZ	yetA
yfiG	yflS	yjmB	yjmC	yjmD	yjmF	yoaB
yraO	ysdC	ytcP	ytcQ	yteP	yteR	ytsJ
yugT	yurJ	yvdE	yvdF	yvdK

[-]SW 2.2.2.10 Utilization of mannitol

[-]SW 2.2.2.11 Utilization of glucitol

[-]SW 2.2.2.12 Utilization of rhamnose

[-]SW 2.2.2.13 Utilization of gluconate

[-]SW 2.2.2.14 Utilization of glucarate/galactarate

[-]SW 2.2.2.15 Utilization of hexuronate

exuR	exuT	kdgA	kdgK	kdgR	kdgT	kduD
kduI	uxaA	uxaB	uxaC	uxuA	yjmB	yjmC
yjmD	yjmF

[-]SW 2.2.2.16 Utilization of inositol

iolA	iolB	iolC	iolD	iolE	iolF	iolG
iolH	iolI	iolJ	iolQ	iolR	iolS	iolT
iolU	iolW	iolX	yfiG

[-]SW 2.2.2.17 Utilization of amino sugars

frlB	frlD	frlM	frlN	frlO	frlR	gamA
gamP	gamR	murP	murQ	murR	nagA	nagB
nagP	nagR	yurJ

[-]SW 2.2.2.18 Utilization of beta-glucosides

[-]SW 2.2.2.19 Utilization of sucrose

[-]SW 2.2.2.2 Utilization of acetoin

[-]SW 2.2.2.20 Utilization of trehalose

[-]SW 2.2.2.21 Utilization of melibiose

[-]SW 2.2.2.22 Utilization of maltose

[-]SW 2.2.2.23 Utilization of starch/ maltodextrin

amyE	amyX	glcK	maa	malL	mdxE	mdxF
mdxG	msmX	pgcM	yvdE	yvdF

[-]SW 2.2.2.24 Utilization of galactan

[-]SW 2.2.2.25 Utilization of glucomannan

gmuA	gmuB	gmuC	gmuD	gmuE	gmuF	gmuG
gmuR

[-]SW 2.2.2.26 Utilization of pectin

lplD	msmX	rhgR	rhiF	rhiG	rhiL	rhiN
ybcM	yesT	yesV	yesW	yesX	yesY	yesZ
yetA	ytcP	ytcQ	yteP	yteR

[-]SW 2.2.2.28 Utilization of other pentoses and hexoses

[-]SW 2.2.2.3 Utilization of glycerol/ glycerol-3-phosphate

[-]SW 2.2.2.4 Utilization of ribose

[-]SW 2.2.2.5 Utilization of xylan/ xylose

[-]SW 2.2.2.6 Utilization of arabinan/ arabinose/ arabitol

abf2	abfA	abn2	abnA	araA	araB	araD
araE	araN	araP	araQ	araR

[-]SW 2.2.2.7 Utilization of fructose

fruA	fruK	fruR	levD	levE	levF	levG
levR

[-]SW 2.2.2.8 Utilization of galactose

[-]SW 2.2.2.9 Utilization of mannose

[-]SW 2.3 Amino acid/ nitrogen metabolism

adeR	ahrC	aimA	alaT	ald	alr	alsT
ansA	ansB	ansR	ansZ	appB	appC	appD
appF	aprE	aprX	argB	argC	argD	argF
argG	argH	argJ	aroA	aroB	aroC	aroD
aroE	aroF	aroH	aroK	artP	artQ	artR
ascR	asd	asnB	asnH	asnO	aspB	azlB
azlC	azlD	bcaP	bcd	bkdAA	bkdAB	bkdB
bkdR	bpr	braB	brnQ	buk	carA	carB
citB	cysE	cysK	dapA	dapB	dapF	dapG
dat	dppA	dppB	dppC	dppD	dppE	dtpT
epr	frlB	frlD	frlM	frlN	frlO	frlR
gabD	gabP	gabR	gabT	gamA	gamP	gamR
gcvH	gcvPA	gcvPB	gcvT	glnA	glnH	glnK
glnL	glnM	glnP	glnQ	glnR	glnT	glsA
gltA	gltB	gltC	gltT	glyA	gudB	hisA
hisB	hisC	hisD	hisF	hisG	hisH	hisI
hisJ	hom	hutG	hutH	hutI	hutM	hutP
hutU	ilvA	ilvB	ilvC	ilvD	ilvH	ispA
kbl	leuA	leuB	leuC	leuD	lpdV	luxS
lysA	lysC	mccA	mccB	metA	metC	metE
metI	metK	metN	metP	metQ	mmgA	mmgB
mmgC	mmgD	mmgE	mmgF	mpr	mtnA	mtnB
mtnD	mtnE	mtnK	mtnN	mtnU	mtnW	mtnX
mtrB	murP	murQ	murR	nagA	nagB	nagP
nagR	nasA	nasB	nasC	nasD	nasE	nasF
nprB	nprE	nrgA	nrgB	oppA	oppB	oppC
oppD	oppF	pabA	papA	papB	patA	patB
pepT	pheA	proA	proB	proG	proH	proI
proJ	prs	ptb	putB	putC	putP	putR
rocA	rocB	rocC	rocD	rocE	rocF	rocG
rocR	rtpA	sdaAA	sdaAB	serA	serB	serC
sr1	tcyA	tcyB	tcyC	tcyJ	tcyK	tcyL
tcyM	tcyN	tcyP	tdh	thrB	thrC	thrD
thrR	tnrA	trpA	trpB	trpC	trpD	trpE
trpF	trpP	tyrA	ureA	ureB	ureC	vpr
yabJ	ybgE	ybgG	ybxG	yitJ	ykfD	ykuQ
ykuR	ylaM	yngE	yngF	yngG	yngH	yngHB
yngI	yngJ	yoaD	yoaV	yodF	yrbD	ytnA
yurJ	yvbV	yveA	yvsH	ywaA	yxeM	yxeN
yxeO	yxjG	yxjH

[-]SW 2.3.1.1 Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation

alsT	glnA	glnH	glnK	glnL	glnM	glnP
glnQ	glnR	glnT	gltA	gltB	gltC	gltT
nrgA	nrgB	tnrA

[-]SW 2.3.1.11 Biosynthesis/ acquisition of methionine/ S-adenosylmethionine/ based on similarity

[-]SW 2.3.1.14 Biosynthesis/ acquisition of histidine

hisA	hisB	hisD	hisF	hisG	hisH	hisI
hisJ	hutM	prs

[-]SW 2.3.1.15 Biosynthesis/acquisition of L- and D-alanine

[-]SW 2.3.1.2 Biosynthesis/ acquisition of proline

[-]SW 2.3.1.4 Biosynthesis/ acquisition of arginine

ahrC	argB	argC	argD	argF	argG	argH
argJ	artP	artQ	artR	carA	carB	rocC
rocE	sr1

[-]SW 2.3.1.5 Biosynthesis/ acquisition of aspartate/ asparagine

[-]SW 2.3.1.6 Biosynthesis/ acquisition of lysine/ threonine

asd	bcaP	dapA	dapB	dapF	dapG	hom
lysA	lysC	patA	thrB	thrC	thrD	thrR
ybxG	ykuR	yvsH

[-]SW 2.3.1.7 Biosynthesis/ acquisition of lysine/ threonine/ based on similarity

[-]SW 2.3.1.8 Biosynthesis/ acquisition of serine/ glycine/ alanine

aimA	bcaP	glyA	serA	serB	serC	ybxG
yrbD

[-]SW 2.3.1.9 Biosynthesis/ acquisition of cysteine

ascR	cysE	cysK	mccA	mccB	tcyA	tcyB
tcyC	tcyJ	tcyK	tcyL	tcyM	tcyN	tcyP
yxeM	yxeN	yxeO

[-]SW 2.3.2.1 Utilization of glutamine/ glutamate

alsT	glnH	glnK	glnL	glnM	glnP	glnQ
glnT	glsA	gltT	gudB	rocG	ylaM

[-]SW 2.3.2.10 Utilization of gamma-amino butyric acid

[-]SW 2.3.2.2 Utilization of proline

[-]SW 2.3.2.4 Utilization of arginine/ ornithine

ahrC	rocA	rocB	rocC	rocD	rocE	rocF
rocG	rocR	sr1

[-]SW 2.3.2.5 Utilization of histidine

[-]SW 2.3.2.6 Utilization of asparagine/ aspartate

[-]SW 2.3.2.7 Utilization of alanine/ serine

[-]SW 2.3.2.8 Utilization of threonine/ glycine

bcaP	gcvH	gcvPA	gcvPB	gcvT	kbl	tdh
ybxG

[-]SW 2.3.3.1 Utilization of nitrate/ nitrite

[-]SW 2.3.3.2 Utilization of urea

[-]SW 2.3.3.3 Utilization of amino sugars

frlB	frlD	frlM	frlN	frlO	frlR	gamA
gamP	gamR	murP	murQ	murR	nagA	nagB
nagP	nagR	yurJ

[-]SW 2.3.3.4 Utilization of peptides

appB	appC	appD	appF	dppA	dppB	dppC
dppD	dppE	dtpT	oppA	oppB	oppC	oppD
oppF	papA	papB	pepT	ykfD

[-]SW 2.3.3.5 Utilization of proteins

aprE	aprX	bpr	epr	ispA	mpr	nprB
nprE	vpr

[-]SW 2.3.4 Putative amino acid transporter

[-]SW 2.4.1 Utilization of lipids

acdA	acsA	acuA	acuC	cotR	etfA	etfB
fadA	fadB	fadE	fadF	fadG	fadH	fadM
fadN	fadR	glpD	glpP	glpQ	glpT	lcfA
lcfB	lip	lipB	lipC	nap	pnbA	scoA
scoB	ybfK	yhdW	yqiK

[-]SW 2.4.1.1 Utilization of phospholipids

[-]SW 2.4.1.2 Utilization of phospholipids/ based on similarity

[-]SW 2.4.1.3 Utilization of fatty acids

acdA	acsA	acuA	acuC	etfA	etfB	fadA
fadB	fadE	fadF	fadG	fadH	fadM	fadN
fadR	lcfA	lcfB	scoA	scoB

[-]SW 2.4.1.4 Utilization of lipids/ other

[-]SW 2.4.2.1 Biosynthesis of fatty acids

accA	accB	accC	accD	acpA	acpS	birA
fabD	fabF	fabG	fabHA	fabHB	fabI	fabL
fapR	plsC	plsX	ycsD	yhdN	yqhY	ywpB

[-]SW 2.4.2.2 Biosynthesis of phospholipids

cdsA	clsA	degV	fakA	gpsA	mprF	pgpB
pgsA	plsY	psd	pssA	yitS	ywiE	ywjE

[-]SW 2.4.2.3 Biosynthesis of isoprenoids

dxs	fni	ispC	ispD	ispE	ispF	ispG
ispH	nudF	uppS	yhfR	yisP	yqiD

[-]SW 2.4.3 Lipid metabolism/ other

cypC	des	desK	desR	fatR	gtaB	pcrB
pgcA	ugtP	yetO	yjiB	yrhJ

[-]SW 2.5.1 Utilization of nucleotides

adeC	deoR	dra	drm	nucB	nupC	pdp
pucA	pucB	pucC	pucD	pucE	pucF	pucG
pucH	pucI	pucJ	pucK	pucL	pucM	pucR

[-]SW 2.5.2.2 Biosynthesis/ acquisition of purine nucleotides/ based on similarity

[-]SW 2.5.2.3 Purine salvage and interconversion

apt	dck	deoD	dgk	guaC	guaD	hprT
pupG	xpt

[-]SW 2.5.2.5 Biosynthesis/ acquisition of nucleotides/ other

[-]SW 2.5.2.6 Biosynthesis/ acquisition of nucleotides/ other/ based on similarity

[-]SW 2.5.3 Metabolism of signalling nucleotides

cdaA	cdaR	cdaS	dgcK	dgcP	dgcW	disA
gdpP	nahA	pdeH	pgpH	radA	relA	sasA
sasB	ycnB	yfkN	yhcA

[-]SW 2.5.4 Nucleotide metabolism/ other

cdd	ndk	pbuE	yjcG	yncF	yosS	ypgQ
yqeK	ytlP

[-]SW 2.6 Additional metabolic pathways

acpK	albA	albB	albC	albD	albE	albF
albG	alr	amj	ascR	asd	bacA	bacB
bacC	bacD	bacE	bacF	bacG	bcrC	besA
bioA	bioB	bioD	bioF	bioI	bioW	birA
blt	bltD	bltR	bpsA	bpsB	bshA	bshB1
bshB2	bshC	btr	cmoI	cmoJ	cmoO	coaA
coaX	csbB	ctaA	ctaB	ctaO	cymR	cypX
cysC	cysH	cysI	cysJ	cysL	cysP	dapA
dapB	dapF	dapG	dat	ddl	defB	dfrA
dgkA	dgkB	dhbA	dhbB	dhbC	dhbE	dhbF
dltA	dltB	dltC	dltD	dltE	dps	dxs
efeB	efeO	efeU	fbpA	fbpB	fbpC	fecC
fecD	fecE	fecF	feuA	feuB	feuC	fhuB
fhuC	fhuD	fhuG	folB	folC	folE	folEB
folK	fpbN	fpbO	fpbP	fpbQ	fra	fur
gbsA	gbsB	gbsR	gcaD	gcvH	ggaA	ggaB
glgA	glgB	glgC	glgD	glgP	glmM	glmR
glmS	glpQ	gsaB	gtaB	gtcA	hemA	hemB
hemC	hemD	hemE	hemH	hemL	hemN	hemQ
hemX	hemY	hemZ	hepS	hepT	hmoA	hmoB
ldcB	ldt	lipA	lipL	lipM	lplJ	ltaS
menA	menB	menC	menD	menE	menF	menH
mnaA	moaA	moaB	moaD	moaE	mobA	mobB
moeA	moeB	mraY	mrgA	mtrA	murAA	murAB
murB	murC	murD	murE	murF	murG	murJ
nadA	nadB	nadC	nadD	nadE	nadF	nadR
niaP	nifS	nos	ntdA	ntdB	ntdC	ntdR
pabA	pabB	pabC	paiA	panB	panC	panD
patA	pdxK	pdxS	pdxT	pfeT	pgcA	phoA
phoB	phoD	phoP	phoR	phy	pit	pksB
pksC	pksD	pksE	pksF	pksG	pksH	pksI
pksJ	pksL	pksM	pksN	pksR	pksS	pncA
pncB	ppaC	ppsA	ppsB	ppsC	ppsD	ppsE
pstA	pstBA	pstBB	pstC	pstS	racE	ribA
ribC	ribD	ribE	ribH	ribR	ribU	sapB
sat	sboA	sboX	sfp/1	sfp/2	sirB	snaA
snaB	sndA	sndB	speA	speB	speD	speE
spoVB	spoVE	spoVFA	spoVFB	spsC	spsD	spsE
spsG	spsI	spsJ	spsK	spsL	srfAA	srfAB
srfAC	srfAD	ssuA	ssuB	ssuC	ssuD	sufA
sufB	sufC	sufD	sufS	sufU	sul	sunA
sunT	tagA	tagB	tagC	tagD	tagE	tagF
tagG	tagH	tagO	tatAD	tatCD	tenA	tenI
thiC	thiD	thiE	thiF	thiG	thiL	thiM
thiO	thiS	thiT	thiU	thiV	thiW	thiX
tuaA/1	tuaA/2	tuaB	tuaC	tuaD	tuaE	tuaF
tuaG	tuaH	uppS	walJ	yabM	ybbA	yciB
ycsE	ydiG	yfhA	yfhO	yfiY	yfiZ	yfnI
yhfQ	yhfU	yisZ	yitA	yitB	yitU	yitW
ykuQ	ykuR	ylaN	ylbQ	ylmB	ylmD	ylnD
ylnF	yloI	yloS	ymfD	yodU	yolJ	ypqP
yqeW	yqgS	yrpC	ytaG	ytdI	ytoA	ytpQ
ytxM	yurI	yusV	yvgJ	yvmC	yvqK	yvrA
yvrB	yvrC	ywtE	yxeB	yxeK	yxeM	yxeN
yxeO	yydF	yydG	yydH	yydI	yydJ

[-]SW 2.6.1.2 Biosynthesis of lipoteichoic acid

csbB	dgkA	dgkB	ltaS	yfhO	yfnI	yqgS
yvgJ

[-]SW 2.6.1.3 Biosynthesis of teichoic acid

dltA	dltB	dltC	dltD	dltE	ggaA	ggaB
gtaB	gtcA	mnaA	pgcA	tagA	tagB	tagC
tagD	tagE	tagF	tagG	tagH	tagO

[-]SW 2.6.1.4 Biosynthesis of teichuronic acid

tuaA/1	tuaA/2	tuaB	tuaC	tuaD	tuaE	tuaF
tuaG	tuaH

[-]SW 2.6.1.5 Biosynthesis of the carrier lipid undecaprenylphosphate

[-]SW 2.6.2.1 Biosynthesis/ acquisition of biotin

bioA	bioB	bioD	bioF	bioI	bioW	birA
yhfU

[-]SW 2.6.2.10 Biosynthesis of molybdopterin

moaA	moaB	moaD	moaE	mobA	mobB	moeA
moeB	ydiG

[-]SW 2.6.2.11 Biosynthesis of NAD(P)

nadA	nadB	nadC	nadD	nadE	nadF	nadR
niaP	nifS	pncA	pncB	ytdI

[-]SW 2.6.2.12 Biosynthesis of pyridoxal phosphate

[-]SW 2.6.2.13 Biosynthesis/ acquisition of cobalamine (B12))

[-]SW 2.6.2.2 Biosynthesis/ acquisition of riboflavin/ FAD

ribA	ribC	ribD	ribE	ribH	ribU	ycsE
yitU	ywtE

[-]SW 2.6.2.3 Biosynthesis/ acquisition of thiamine

dxs	tenA	tenI	thiC	thiD	thiE	thiF
thiG	thiL	thiM	thiO	thiS	thiT	thiU
thiV	thiW	thiX	ylmB	yloS

[-]SW 2.6.2.4 Biosynthesis of coenzyme A

coaA	coaX	panB	panC	panD	ylbQ	yloI
ytaG

[-]SW 2.6.2.5 Biosynthesis of folate

dfrA	folB	folC	folE	folEB	folK	pabA
pabB	pabC	sul

[-]SW 2.6.2.6 Biosynthesis of heme/ siroheme

ctaA	ctaB	ctaO	gsaB	hemA	hemB	hemC
hemD	hemE	hemH	hemL	hemN	hemQ	hemX
hemY	hemZ	sirB	ylnD	ylnF

[-]SW 2.6.2.7 Biosynthesis and scavenging of lipoic acid

[-]SW 2.6.2.8 Biosynthesis of menaquinone

hepS	hepT	menA	menB	menC	menD	menE
menF	menH

[-]SW 2.6.2.9 Biosynthesis of menaquinone/ based on similarity

[-]SW 2.6.3 Phosphate metabolism

glpQ	phoA	phoB	phoD	phoP	phoR	phy
pit	ppaC	pstA	pstBA	pstBB	pstC	pstS
sapB	tatAD	tatCD	yqeW	yurI

[-]SW 2.6.4 Sulfur metabolism

ascR	cmoI	cmoJ	cmoO	cymR	cysC	cysH
cysI	cysJ	cysL	cysP	defB	mtrA	ribR
sat	snaA	snaB	sndA	sndB	ssuA	ssuB
ssuC	ssuD	yisZ	yitA	yitB	yxeK	yxeM
yxeN	yxeO

[-]SW 2.6.4.1 Conversion of S-methyl cysteine to cysteine

ascR	cmoI	cmoJ	cmoO	defB	ribR	snaA
sndA

[-]SW 2.6.4.2 sulfur metabolism/ general

cymR	cysC	cysH	cysI	cysJ	cysL	cysP
mtrA	sat	ssuA	ssuB	ssuC	ssuD	yisZ
yitA	yitB

[-]SW 2.6.4.3 Conversion of S-(2-succino)cysteine to cysteine

[-]SW 2.6.5.1 Acquisition of iron / Other

besA	btr	cypX	dhbA	dhbB	dhbC	dhbE
dhbF	dps	fbpA	fbpB	fbpC	fur	hmoA
hmoB	mrgA	pchR	ybbA	yhfQ	ylaN	ymfD
ytpQ	yvmC

[-]SW 2.6.5.2 Acquisition of iron/ based on similarity

[-]SW 2.6.5.3 Biosynthesis of iron-sulfur clusters

fra	sufA	sufB	sufC	sufD	sufS	sufU
yitW

[-]SW 2.6.5.5 Elemental iron transport system

[-]SW 2.6.5.6 Iron export

[-]SW 2.6.6.2 Biosynthesis of bacillithiol

[-]SW 2.6.6.3 Biosynthesis of dipicolinate

[-]SW 2.6.6.4 Biosynthesis of glycine betaine

[-]SW 2.6.6.5 Biosynthesis of glycogen

[-]SW 2.6.6.6 Metabolism of polyamines

blt	bltD	bltR	paiA	speA	speB	speD
speE

[-]SW 2.6.6.7 Biosynthesis of rhamnose (for the exosporium)

[-]SW 2.6.6.8 Biosynthesis of legionaminic acid (for spore crust))

[-]SW 2.7 Detoxification reactions

catD	catE	cpgA	pncB	pxpA	pxpB	pxpC
snaB	sndB	yabJ	yflK	yxeK

[-]SW 3 Information processing

aag	abbA	abh	abrB	acoR	acuA	acuC
adaA	adaB	addA	addB	adeR	adhR	ahrC
alaR	alaS	alkA	alsR	ansR	aprE	araR
arfM	argS	arsR	ascR	aseR	asnS	aspS
azlB	bceR	bceS	bdbA	bdbB	bdbC	bdbD
bglP	birA	bkdR	bltR	bmrB	bmrR	bofA
bofC	bpr	brfA	bsdA	bslA	bsrA	bsrB
bstC	bstG	btr	c-di-AMP riboswitch, kimA	c-di-AMP riboswitch, ktrA	catR	cca
ccpA	ccpB	ccpC	ccpN	cggR	cheA	cheC
cheD	cheR	cheV	cheY	chrS	citB	citR
citS	citT	clpC	clpE	clpP	clpQ	clpX
clpY	codV	codY	coiA	comA	comC	comEA
comEB	comEC	comER	comFA	comFB	comFC	comGA
comGB	comGC	comGD	comGE	comGF	comGG	comK
comN	comP	comQ	comS	comX	comZ	cpaA
cpgA	crh	csaA	csfB	cshA	cshB	csoR
cspB	cspC	cspD	cspR	csrA	cssR	cssS
ctaG	ctc	ctpA	ctpB	ctsR	cymR	cysE
cysK	cysL	cysS	czrA	darA	darB	dctR
dctS	ddcP	deaD	defA	degQ	degR	degS
degU	deoR	desK	desR	dinG	dnaA	dnaB
dnaC	dnaD	dnaE	dnaG	dnaI	dnaJ	dnaK
dnaN	dnaX	dnmA	dprA	dtd	dtrR	ecsA
ecsB	efp	eno	epr	epsA	epsB	era
exoA	exoR	exuR	fadR	fapR	fatR	fbpB
ffh	fin	flgM	flhA	flhB	fliP	fliQ
fliR	fliY	fliZ	fmt	fnr	folD	folE
folEB	frlR	frr	fruR	ftsE	ftsH	ftsX
ftsY	fur	fusA	gabR	gamR	ganR	gatA
gatB	gatC	gbsR	gdpP	gerE	gerR	gidA
gidB	glcR	glcT	glnA	glnK	glnL	glnR
glpP	gltC	gltR	gltX	glvR	glyA	glyQ
glyS	gmk	gmuR	gntR	gpr	gpsA	greA
groEL	groES	grpE	gsaB	guaB	gudB	gutR
gyrA	gyrB	hag	hbs	helD	hfq	hisS
hisZ	hit	hlpB	holA	holB	hprK	hprT
hrcA	htpG	htpX	htrA	htrB	htrC	hutP
hxlR	hypR	ileS	immA	immR	infA	infB
infC	iolQ	iolR	ipi	ispA	kapB	kapD
kbaA	kdgR	khtT	kimA	kinA	kinB	kinC
kinD	kinE	kipR	kre	ksgA	ktrA	ktrC
leuS	levE	levR	lexA	lgt	liaF	liaH
liaR	liaS	licB	licR	licT	ligA	ligB
ligD	lipA	lmrA	lnrJ	lnrK	lonA	lonB
lrpA	lrpB	lrpC	lspA	lutR	luxS	lysS
lytS	lytT	malK	malR	manP	manR	map
mcsA	mcsB	mdtR	mecA	med	melR	metS
mfd	mgsR	mgtE	mhqR	miaA	mifM	mlpA
mntR	motB	motI	mpr	mrfA	mrfB	mrnC
mstX	mta	mtbP	mtlA	mtlR	mtrB	murR
mutL	mutM	mutS	mutSB	mutT	mutY	nadR
nagR	nahA	natK	natR	ndh	ndoA	nfo
nifZ	nin	nprB	nprE	nrdR	nrgB	nrnA
nrnB	nsrR	ntdR	nth	nucA	nusA	nusB
nusG	obg	ogt	ohrR	opcR	oppA	oppB
oppC	oppD	oppF	opuCA	padR	paiB	pamR
parA	parB	parC	parE	pcp	pcrA	pdhB
pdhC	pdxS	pdxT	pepF	perR	pfkA	pgi
pgk	pgpH	pheS	pheT	phoP	phoR	phrA
phrC	phrE	phrF	phrG	phrH	phrI	phrK
pksA	pnpA	polA	polC	polX	polY1	polY2
ppiB	prfA	prfB	priA	prkA	prkC	prkD
prmC	proS	prp	prpC	prpE	prsA	prsW
psdR	psdS	ptkA	ptpZ	ptsG	ptsH	ptsI
pucR	purB	purR	putR	pxpB	pxpC	pyrF
pyrR	qdoR	queA	queC	queD	queE	queF
queG	radA	radC	rapA	rapB	rapC	rapD
rapE	rapF	rapG	rapH	rapI	rapJ	rapK
rarA	rasP	rbfA	rbgA	rbsR	recA	recD2
recF	recG	recJ	recN	recO	recQ	recR
recS	recU	recX	remA	resD	resE	rex
rghR	rhaR	rhgR	rho	rimM	ripX	rlmCD
rluB	rmgR	rnc	rnhB	rnhC	rnjA	rnjB
rnmV	rnpA	rnpB	rnr	rny	rnz	rocG
rocR	rok	rph	rplA	rplB	rplC	rplD
rplE	rplF	rplGA	rplGB	rplI	rplJ	rplK
rplL	rplM	rplN	rplO	rplP	rplQ	rplR
rplS	rplT	rplU	rplV	rplW	rplX	rpmA
rpmB	rpmC	rpmD	rpmE	rpmEB	rpmF	rpmGA
rpmGB	rpmGC	rpmH	rpmI	rpmJ	rpoA	rpoB
rpoC	rpoE	rpoY	rppH	rpsB	rpsC	rpsD
rpsE	rpsF	rpsG	rpsH	rpsI	rpsJ	rpsK
rpsL	rpsM	rpsN	rpsNB	rpsO	rpsP	rpsQ
rpsR	rpsS	rpsT	rpsU	rqcH	rrnA-16S	rrnA-23S
rrnA-5S	rrnB-16S	rrnB-23S	rrnB-5S	rrnD-16S	rrnD-23S	rrnD-5S
rrnE-16S	rrnE-23S	rrnE-5S	rrnG-16S	rrnG-23S	rrnG-5S	rrnH-16S
rrnH-23S	rrnH-5S	rrnI-16S	rrnI-23S	rrnI-5S	rrnJ-16S	rrnJ-23S
rrnJ-5S	rrnO-16S	rrnO-23S	rrnO-5S	rrnW-16S	rrnW-23S	rrnW-5S
rsbP	rsbQ	rsbR	rsbRB	rsbRC	rsbRD	rsbS
rsbT	rsbU	rsbV	rsbW	rsbX	rsfA	rsfS
rsgI	rsiO	rsiV	rsiW	rsiX	rsoA	rtp
rtpA	ruvA	ruvB	S1290	sacP	sacT	sacX
sacY	salA	sbcC	sbcD	sbcE	scoC	scpA
scpB	scr	sda	sdpR	secA	secDF	secE
secG	secY	senS	serS	sftA	sigA	sigB
sigD	sigE	sigF	sigG	sigH	sigI	sigK
sigKC	sigL	sigM	sigO	sigV	sigW	sigX
sigY	sigZ	sinI	sinR	sipS	sipT	sipU
sipV	sipW	sirA	sivA	sivC	sknR	slrA
slrR	smc	smpB	splA	splB	spo0A	spo0B
spo0E	spo0F	spoIIAA	spoIIAB	spoIIE	spoIIGA	spoIIIAA
spoIIIAB	spoIIIAC	spoIIIAD	spoIIIAE	spoIIIAF	spoIIIAG	spoIIIAH
spoIIID	spoIIIE	spoIIR	spoIVB	spoIVCA	spoIVFA	spoIVFB
spoVC	spoVG	spoVT	sprA	sprB	spx	SR7P
srtN	ssbA	ssbB	ssrA	swrA	swrAA/2	swrB
tatAC	tatAD	tatAY	tatCD	tatCY	tepA	tgt
thdF	thiI	thrR	thrS	thrZ	tig	tilS
tkmA	tmcAL	tnrA	topA	topB	tpi	treR
trmB	trmD	trmFO	trmK	trmN6	trmR	trmU
trnA-Ala	trnA-Ile	trnB-Ala	trnB-Arg	trnB-Asn	trnB-Asp	trnB-Glu
trnB-Gly1	trnB-Gly2	trnB-His	trnB-Ile2	trnB-Leu1	trnB-Leu2	trnB-Lys
trnB-Met1	trnB-Met2	trnB-Met3	trnB-Phe	trnB-Pro	trnB-Ser1	trnB-Ser2
trnB-Thr	trnB-Val	trnD-Asn	trnD-Asp	trnD-Cys	trnD-Gln	trnD-Glu
trnD-Gly	trnD-His	trnD-Leu1	trnD-Leu2	trnD-Met	trnD-Phe	trnD-Ser
trnD-Thr	trnD-Trp	trnD-Tyr	trnD-Val	trnE-Arg	trnE-Asp	trnE-Gly
trnE-Met	trnI-Ala	trnI-Arg	trnI-Asn	trnI-Gly	trnI-Pro	trnI-Thr
trnJ-Ala	trnJ-Arg	trnJ-Gly	trnJ-Leu1	trnJ-Leu2	trnJ-Lys	trnJ-Pro
trnJ-Thr	trnJ-Val	trnO-Ala	trnO-Ile	trnQ-Arg	trnS-Asn	trnS-Gln
trnS-Glu	trnS-Leu1	trnS-Leu2	trnS-Lys	trnS-Ser	trnSL-Ala1	trnSL-Arg1
trnSL-Arg2	trnSL-Gln1	trnSL-Gln2	trnSL-Glu1	trnSL-Glu2	trnSL-Gly1	trnSL-Met1
trnSL-Ser1	trnSL-Thr1	trnSL-Tyr1	trnSL-Val1	trnSL-Val2	trnY-Asp	trnY-Glu
trnY-Lys	trnY-Phe	trpS	truA	truB	tsaB	tsaC
tsaD	tsaE	tsf	tufA	tyrS	tyrZ	ung
uvrA	uvrB	uvrC	uvrX	valS	vpr	walH
walI	walJ	walK	walR	whiA	wprA	xpf
xpt	xre	xtmA	xtmB	xylR	yaaA	yaaJ
yaaO	yaaT	yabA	yabC	yabG	yabO	yabT
yacC	yacD	yacF	yacO	yacP	yazB	ybdJ
ybdK	ybfI	ybfP	ybzH	ycbG	ycbL	ycbM
yceK	ycgE	ycgK	yclJ	yclK	ycnC	ycnK
ycxD	yczG	ydaK	ydcI	ydeB	ydeC	ydeE
ydeF	ydeL	ydeP	ydeS	ydfD	ydfF	ydfH
ydfI	ydfL	ydgC	ydgE	ydgG	ydgJ	ydhC
ydiD	ydiO	ydiP	ydiR	ydiS	ydjA	yefB
yefC	yerC	yerO	yesM	yesN	yetI	yetL
yezB	yezC	yezE	yfhF	yfiF	yfiR	yfiV
yfjL	yfjN	yfjO	yfjP	yfkA	yfkJ	yflG
yfmK	yfmL	yfmP	ygzD	yhaM	yhaO	yhaZ
yhbI	yhcF	yhcR	yhcS	yhcT	yhcY	yhcZ
yhdI	yhdK	yhdL	yhdQ	yhfW	yhgD	yhjH
yhxC	yidC1	yidC2	yirB	yisI	yisP	yisR
yisV	yizB	yjbH	yjbO	yjcD	yjcK	yjdI
yjhB	yjlC	ykcB	ykoG	ykoH	ykoM	ykoV
ykrK	ykuI	ykvN	ykvZ	ylaC	ylaD	ylaG
ylbF	ylbH	yloH	yloM	yloN	ylxM	ylxS
ylyB	ylzJ	ymcA	ymcB	ymfC	ymfI	ynaD
ynbA	ynbB	yneB	yneI	ynzD	yoaU	yobD
yobE	yobH	yobQ	yobS	yodB	yofA	yolD
yolJ	yonN	yonO	yonR	yopO	yopS	yoqW
yorI	yorK	yorL	yorS	yotL	yozG	yozK
yozL	ypbH	ypdQ	ypeP	ypfD	yphC	yplP
ypoP	ypsC	ypuI	ypvA	ypwA	yqaF	yqaG
yqeH	yqeI	yqeT	yqeU	yqeV	yqfG	yqfL
yqgP	yqhH	yqiB	yqiC	yqjX	yqxC	yqxK
yraA	yraN	yrbF	yrdQ	yrkP	yrkQ	yrrK
yrrN	yrrO	yrvM	yrvO	ysdB	ysfB	ysgA
ysmB	ysxC	ytcD	ytoI	ytpR	ytrA	ytvA
ytxK	ytzE	ytzG	yueB	yueC	yukB	yukC
yukD	yurI	yusT	yuzN	yvaF	yvaO	yvaV
yvbU	yvcJ	yvdE	yvdR	yvdS	yvdT	yvfT
yvfU	yvkB	yvrG	yvrHb	yvzC	ywbD	ywbI
ywcC	ywhA	ywjD	ywlE	ywlF	ywlG	ywoH
ywpD	ywqA	ywqL	ywqM	ywzG	yxaD	yxbF
yxdJ	yxdK	yxjL	yxjM	yxjO	yxlC	yxlD
yyaN	yybA	yybE	yydA	yydF	yydG	yydH
yydI	yydJ	yydK	zagA	zur

[-]SW 3.1 Genetics

aag	adaA	adaB	addA	addB	alkA	bdbC
bdbD	bstC	bstG	codV	coiA	comA	comC
comEA	comEB	comEC	comER	comFA	comFB	comFC
comGA	comGB	comGC	comGD	comGE	comGF	comGG
comK	comN	comP	comQ	comS	comX	comZ
cpgA	cysE	dinG	dnaA	dnaB	dnaC	dnaD
dnaE	dnaG	dnaI	dnaN	dnaX	dprA	exoA
exoR	fin	glyA	gpsA	greA	gyrA	gyrB
hag	hbs	helD	hit	hlpB	holA	holB
kre	lexA	ligA	ligB	ligD	lrpC	mecA
med	mfd	motB	mrfA	mrfB	mtbP	mutL
mutM	mutS	mutSB	mutT	mutY	ndh	nfo
nin	nth	nucA	ogt	oppA	oppB	oppC
oppD	oppF	parA	parB	parC	parE	pcrA
pdhB	pdhC	pdxS	pdxT	pfkA	pgi	pgk
phrC	phrF	phrK	pnpA	polA	polC	polX
polY1	polY2	priA	prmC	ptsI	purB	pyrF
radA	radC	rapC	rapD	rapF	rapK	rarA
recA	recD2	recF	recG	recJ	recN	recO
recQ	recR	recS	recU	recX	ripX	rnhB
rnhC	rok	rplK	rppH	rtp	ruvA	ruvB
sbcC	sbcD	sbcE	scpA	scpB	sftA	sirA
smc	splA	splB	spoIIIE	spoIVCA	sprA	sprB
ssbA	ssbB	topA	topB	tpi	tsaC	ung
uvrA	uvrB	uvrC	uvrX	walJ	whiA	xtmA
xtmB	yabA	ydiO	ydiP	ydiR	ydiS	ydjA
yefB	yefC	yfhF	yfjP	yhaO	yhaZ	yhfW
yhxC	yidC2	yjcD	yjhB	yjlC	ykcB	ykoV
yneB	yobH	yolD	yonN	yorI	yorK	yorL
yorS	yozK	yozL	ypdQ	ypvA	yqhH	yqiB
yqiC	yqjX	yqxK	ytrA	ytxK	yvcJ	ywjD
ywlF	ywqA	ywqL

[-]SW 3.1.1 DNA replication

dnaA	dnaB	dnaC	dnaD	dnaE	dnaG	dnaI
dnaN	dnaX	exoR	holA	holB	ligA	ligB
polA	polC	priA	recD2	recJ	recQ	rnhB
rnhC	rtp	sirA	ssbA	ssbB	topB	xtmA
xtmB	yabA

[-]SW 3.1.2 DNA replication/ based on similarity

[-]SW 3.1.3 DNA condensation/ segregation

codV	gyrA	gyrB	hbs	parA	parB	parC
parE	ripX	scpA	scpB	sftA	smc	spoIIIE
topA	topB	whiA

[-]SW 3.1.4 DNA restriction/ modification

[-]SW 3.1.5.1 Excision of prophages

[-]SW 3.1.5.2 A/P endonucleases

[-]SW 3.1.5.3 Spore-encoded non-homologous end joining system

[-]SW 3.1.5.4 Double strand breaks repair

[-]SW 3.1.5.5 Oxidized guanine (GO) DNA repair system

[-]SW 3.1.5.7 Mismatch repair (MMR)

[-]SW 3.1.6 DNA repair/ recombination/ based on similarity

aag	recJ	recQ	yefB	yefC	yfjP	yhaO
yhaZ	yjcD	yjhB	yneB	yobH	yorK	yozK
yozL	ypvA	yqxK

[-]SW 3.1.8 Genetics/ other/ based on similarity

bstC	hit	yonN	yorS	yqhH	yqiB	yqiC
ytxK	ywqA

[-]SW 3.1.9 Newly identified competence genes

cpgA	cysE	glyA	gpsA	greA	ndh	pdhB
pdhC	pdxS	pdxT	pfkA	pgi	pgk	prmC
ptsI	purB	pyrF	rplK	tpi	tsaC	yfhF
yjlC	ykcB	yqhH	ytrA	ywlF

[-]SW 3.2.1 Transcription

greA	mfd	nusA	nusB	nusG	rho	rpoA
rpoB	rpoC	rpoE	rpoY	rsoA	sigA	sigB
sigD	sigE	sigF	sigG	sigH	sigI	sigK
sigKC	sigL	sigM	sigO	sigV	sigW	sigX
sigY	sigZ	xpf	ylaC	yloH	yonO

[-]SW 3.2.1.1 RNA polymerase

[-]SW 3.2.1.2 Sigma factors

rsoA	sigA	sigB	sigD	sigE	sigF	sigG
sigH	sigI	sigK	sigKC	sigL	sigM	sigO
sigV	sigW	sigX	sigY	sigZ	xpf	ylaC

[-]SW 3.2.1.3 Transcription elongation/ termination

[-]SW 3.2.1.4 Prophage/ phage transcription

[-]SW 3.2.2 RNA chaperones

[-]SW 3.2.3 DEAD-box RNA helicases

[-]SW 3.2.4 RNases

eno	mrnC	nahA	ndoA	nrnA	nrnB	pnpA
rimM	rnc	rnhB	rnhC	rnjA	rnjB	rnmV
rnpA	rnpB	rnr	rny	rnz	rph	rppH
SR7P	yaaT	yacP	yhaM	yhcR	ylbF	ymcA
yqfG	yurI

[-]SW 3.2.4.1 Exoribonucleases

[-]SW 3.2.4.2 Endoribonucleases

mrnC	ndoA	rnc	rnhB	rnhC	rnjB	rnmV
rnpA	rny	rnz	yacP	yhcR	yqfG	yurI

[-]SW 3.2.4.3 RNA pyrophosphohydrolase

[-]SW 3.2.4.4 RNases/ Other

[-]SW 3.2.4.5 Effectors of RNA degradation

[-]SW 3.2.5 RNase/ based on similarity

[-]SW 3.3 Protein synthesis, modification and degradation

acuA	acuC	alaS	aprE	argS	asnS	aspS
bceS	bdbA	bdbB	bdbC	bdbD	bpr	brfA
cca	cheA	cheC	cheD	cheR	citS	clpC
clpE	clpP	clpQ	clpX	clpY	comC	comP
comQ	cpgA	csaA	cshA	cshB	cspR	cssS
ctaG	ctc	ctpA	ctpB	ctsR	cysS	dctS
ddcP	deaD	defA	degS	desK	dnaJ	dnaK
dtd	ecsA	ecsB	efp	epr	epsA	epsB
era	ffh	flhA	flhB	fliP	fliQ	fliR
fliY	fliZ	fmt	folD	folE	folEB	frr
ftsH	ftsY	fusA	gatA	gatB	gatC	gidA
gidB	glnK	gltX	glyQ	glyS	gpr	groEL
groES	grpE	gsaB	hisS	hisZ	hprK	htpG
htpX	htrA	htrB	htrC	ileS	immA	infA
infB	infC	ipi	ispA	kinA	kinB	kinC
kinD	kinE	ksgA	leuS	lgt	liaH	liaS
lnrJ	lonA	lonB	lspA	lysS	lytS	malK
map	mcsB	mecA	metS	miaA	mifM	mlpA
mpr	mrnC	mstX	natK	nifZ	nprB	nprE
obg	pcp	pheS	pheT	phoR	ppiB	prfA
prfB	prkA	prkC	prkD	prmC	proS	prp
prpC	prpE	prsA	prsW	psdS	ptkA	ptpZ
queA	queC	queD	queE	queF	queG	rapA
rapB	rapC	rapD	rapE	rapF	rapG	rapH
rapI	rapJ	rapK	rasP	rbfA	rbgA	resE
rimM	rlmCD	rluB	rnc	rnmV	rnpA	rnpB
rnz	rph	rplA	rplB	rplC	rplD	rplE
rplF	rplGA	rplGB	rplI	rplJ	rplK	rplL
rplM	rplN	rplO	rplP	rplQ	rplR	rplS
rplT	rplU	rplV	rplW	rplX	rpmA	rpmB
rpmC	rpmD	rpmE	rpmEB	rpmF	rpmGA	rpmGB
rpmGC	rpmH	rpmI	rpmJ	rpsB	rpsC	rpsD
rpsE	rpsF	rpsG	rpsH	rpsI	rpsJ	rpsK
rpsL	rpsM	rpsN	rpsNB	rpsO	rpsP	rpsQ
rpsR	rpsS	rpsT	rpsU	rqcH	rrnA-16S	rrnA-23S
rrnA-5S	rrnB-16S	rrnB-23S	rrnB-5S	rrnD-16S	rrnD-23S	rrnD-5S
rrnE-16S	rrnE-23S	rrnE-5S	rrnG-16S	rrnG-23S	rrnG-5S	rrnH-16S
rrnH-23S	rrnH-5S	rrnI-16S	rrnI-23S	rrnI-5S	rrnJ-16S	rrnJ-23S
rrnJ-5S	rrnO-16S	rrnO-23S	rrnO-5S	rrnW-16S	rrnW-23S	rrnW-5S
rsbP	rsbT	rsbU	rsbW	rsbX	rsfS	scr
secA	secDF	secE	secG	secY	serS	sipS
sipT	sipU	sipV	sipW	smpB	spo0E	spoIIAB
spoIIE	spoIIGA	spoIIIAB	spoIIIAC	spoIIIAD	spoIIIAE	spoIIIAF
spoIIIAG	spoIIIAH	spoIVFB	spoVC	srtN	ssrA	tatAC
tatAD	tatAY	tatCD	tatCY	tepA	tgt	thdF
thiI	thrS	thrZ	tig	tilS	tkmA	tmcAL
trmB	trmD	trmFO	trmK	trmN6	trmR	trmU
trnA-Ala	trnA-Ile	trnB-Ala	trnB-Arg	trnB-Asn	trnB-Asp	trnB-Glu
trnB-Gly1	trnB-Gly2	trnB-His	trnB-Ile2	trnB-Leu1	trnB-Leu2	trnB-Lys
trnB-Met1	trnB-Met2	trnB-Met3	trnB-Phe	trnB-Pro	trnB-Ser1	trnB-Ser2
trnB-Thr	trnB-Val	trnD-Asn	trnD-Asp	trnD-Cys	trnD-Gln	trnD-Glu
trnD-Gly	trnD-His	trnD-Leu1	trnD-Leu2	trnD-Met	trnD-Phe	trnD-Ser
trnD-Thr	trnD-Trp	trnD-Tyr	trnD-Val	trnE-Arg	trnE-Asp	trnE-Gly
trnE-Met	trnI-Ala	trnI-Arg	trnI-Asn	trnI-Gly	trnI-Pro	trnI-Thr
trnJ-Ala	trnJ-Arg	trnJ-Gly	trnJ-Leu1	trnJ-Leu2	trnJ-Lys	trnJ-Pro
trnJ-Thr	trnJ-Val	trnO-Ala	trnO-Ile	trnQ-Arg	trnS-Asn	trnS-Gln
trnS-Glu	trnS-Leu1	trnS-Leu2	trnS-Lys	trnS-Ser	trnSL-Ala1	trnSL-Arg1
trnSL-Arg2	trnSL-Gln1	trnSL-Gln2	trnSL-Glu1	trnSL-Glu2	trnSL-Gly1	trnSL-Met1
trnSL-Ser1	trnSL-Thr1	trnSL-Tyr1	trnSL-Val1	trnSL-Val2	trnY-Asp	trnY-Glu
trnY-Lys	trnY-Phe	trpS	truA	truB	tsaB	tsaC
tsaD	tsaE	tsf	tufA	tyrS	tyrZ	valS
vpr	walK	wprA	yaaA	yaaJ	yaaO	yabC
yabG	yabO	yabT	yacC	yacD	yacF	yacO
ybdK	ycbM	yclK	ydfH	ydgE	ydiD	yesM
yfjL	yfjN	yfjO	yfkA	yfkJ	yflG	yfmK
yfmL	yhcS	yhcT	yhcY	yidC1	yidC2	yirB
yisI	yjbH	yjbO	yjcK	yjdI	ykoH	ylaG
ylbH	yloM	yloN	ylxM	ylxS	ylyB	ylzJ
ymcB	ymfI	ynaD	ynbB	yobE	yolJ	yoqW
ypbH	ypfD	yphC	ypsC	ypuI	ypwA	yqeH
yqeI	yqeT	yqeU	yqeV	yqfG	yqgP	yqxC
yraA	yrbF	yrkQ	yrrK	yrrN	yrrO	yrvM
yrvO	ysgA	ysxC	ytpR	ytzG	yueB	yueC
yukB	yukC	yukD	yvdR	yvdS	yvfT	yvrG
ywbD	ywlE	ywlG	ywpD	yxdK	yxjM	yydA
yydG	yydH

[-]SW 3.3.1 Translation

alaS	argS	asnS	aspS	brfA	cca	cpgA
cshA	cshB	cspR	ctc	cysS	deaD	defA
dtd	efp	era	fmt	folD	folE	folEB
frr	fusA	gatA	gatB	gatC	gidA	gidB
gltX	glyQ	glyS	gsaB	hisS	hisZ	ileS
infA	infB	infC	ksgA	leuS	lysS	map
metS	miaA	mifM	mrnC	nifZ	obg	pheS
pheT	prfA	prfB	prmC	proS	prp	queA
queC	queD	queE	queF	queG	rbfA	rbgA
rimM	rlmCD	rluB	rnc	rnmV	rnpA	rnpB
rnz	rph	rplA	rplB	rplC	rplD	rplE
rplF	rplGA	rplGB	rplI	rplJ	rplK	rplL
rplM	rplN	rplO	rplP	rplQ	rplR	rplS
rplT	rplU	rplV	rplW	rplX	rpmA	rpmB
rpmC	rpmD	rpmE	rpmEB	rpmF	rpmGA	rpmGB
rpmGC	rpmH	rpmI	rpmJ	rpsB	rpsC	rpsD
rpsE	rpsF	rpsG	rpsH	rpsI	rpsJ	rpsK
rpsL	rpsM	rpsN	rpsNB	rpsO	rpsP	rpsQ
rpsR	rpsS	rpsT	rpsU	rqcH	rrnA-16S	rrnA-23S
rrnA-5S	rrnB-16S	rrnB-23S	rrnB-5S	rrnD-16S	rrnD-23S	rrnD-5S
rrnE-16S	rrnE-23S	rrnE-5S	rrnG-16S	rrnG-23S	rrnG-5S	rrnH-16S
rrnH-23S	rrnH-5S	rrnI-16S	rrnI-23S	rrnI-5S	rrnJ-16S	rrnJ-23S
rrnJ-5S	rrnO-16S	rrnO-23S	rrnO-5S	rrnW-16S	rrnW-23S	rrnW-5S
rsfS	serS	smpB	spoVC	ssrA	tgt	thdF
thiI	thrS	thrZ	tilS	tmcAL	trmB	trmD
trmFO	trmK	trmN6	trmR	trmU	trnA-Ala	trnA-Ile
trnB-Ala	trnB-Arg	trnB-Asn	trnB-Asp	trnB-Glu	trnB-Gly1	trnB-Gly2
trnB-His	trnB-Ile2	trnB-Leu1	trnB-Leu2	trnB-Lys	trnB-Met1	trnB-Met2
trnB-Met3	trnB-Phe	trnB-Pro	trnB-Ser1	trnB-Ser2	trnB-Thr	trnB-Val
trnD-Asn	trnD-Asp	trnD-Cys	trnD-Gln	trnD-Glu	trnD-Gly	trnD-His
trnD-Leu1	trnD-Leu2	trnD-Met	trnD-Phe	trnD-Ser	trnD-Thr	trnD-Trp
trnD-Tyr	trnD-Val	trnE-Arg	trnE-Asp	trnE-Gly	trnE-Met	trnI-Ala
trnI-Arg	trnI-Asn	trnI-Gly	trnI-Pro	trnI-Thr	trnJ-Ala	trnJ-Arg
trnJ-Gly	trnJ-Leu1	trnJ-Leu2	trnJ-Lys	trnJ-Pro	trnJ-Thr	trnJ-Val
trnO-Ala	trnO-Ile	trnQ-Arg	trnS-Asn	trnS-Gln	trnS-Glu	trnS-Leu1
trnS-Leu2	trnS-Lys	trnS-Ser	trnSL-Ala1	trnSL-Arg1	trnSL-Arg2	trnSL-Gln1
trnSL-Gln2	trnSL-Glu1	trnSL-Glu2	trnSL-Gly1	trnSL-Met1	trnSL-Ser1	trnSL-Thr1
trnSL-Tyr1	trnSL-Val1	trnSL-Val2	trnY-Asp	trnY-Glu	trnY-Lys	trnY-Phe
trpS	truA	truB	tsaB	tsaC	tsaD	tsaE
tsf	tufA	tyrS	tyrZ	valS	yaaA	yaaJ
yaaO	yabC	yabO	yacF	yacO	ydiD	yfjL
yfjN	yfjO	yfkA	yflG	yfmL	yhcT	yjbO
yjcK	yjdI	ylaG	ylbH	yloM	yloN	ylxS
ylyB	ymcB	ymfI	ynaD	ynbB	ypfD	yphC
ypsC	ypuI	yqeH	yqeI	yqeT	yqeU	yqeV
yqfG	yqxC	yrrK	yrrN	yrrO	yrvM	yrvO
ysgA	ysxC	ytpR	ytzG	ywbD	ywlG	yydA

[-]SW 3.3.1.10 Aminoacyl-tRNA synthetases

alaS	argS	asnS	aspS	cysS	gatA	gatB
gatC	gltX	glyQ	glyS	hisS	hisZ	ileS
leuS	lysS	metS	pheS	pheT	proS	serS
thrS	thrZ	trpS	tyrS	tyrZ	valS	ytpR

[-]SW 3.3.1.11 Translation factors

efp	frr	fusA	infA	infB	infC	prfA
prfB	rbfA	tsf	tufA	ylaG

[-]SW 3.3.1.12 Translation/ other

brfA	deaD	defA	dtd	map	mifM	rqcH
rsfS	smpB	spoVC	ssrA	yflG	yqeT

[-]SW 3.3.1.13 Translation/ other/ based on similarity

[-]SW 3.3.1.14 Translation factor modification and maturation

[-]SW 3.3.1.2 rRNA modification and maturation

gidB	ksgA	mrnC	rimM	rlmCD	rluB	rnc
rnmV	yacO	ypuI	yqeU	yqfG	ysgA

[-]SW 3.3.1.3 rRNA modification and maturation/ based on similarity

yabC	yfjO	yhcT	yjbO	ylbH	yloM	yloN
ylyB	ypsC	yqxC	yrrK	ytzG	ywbD	yydA

[-]SW 3.3.1.5 Ribosomal protein/ based on similarity

[-]SW 3.3.1.6 Ribosome assembly

cpgA	cshA	cshB	era	obg	prp	rbgA
yaaA	yfmL	yphC	yqeH	ysxC

[-]SW 3.3.1.9 tRNA modification and maturation/ based on similarity

[-]SW 3.3.2 Chaperones/ protein folding

bdbA	bdbB	bdbC	bdbD	dnaJ	dnaK	groEL
groES	grpE	htpG	ppiB	tig

[-]SW 3.3.3 Chaperone/ protein folding/ based on similarity

[-]SW 3.3.4.1 Protein maturation

[-]SW 3.3.4.4 Protein phosphatases

cheC	fliY	prpC	prpE	ptpZ	rapA	rapB
rapC	rapD	rapE	rapF	rapG	rapH	rapI
rapJ	rapK	rsbP	rsbU	rsbX	spo0E	spoIIE
yfkJ	yisI	ywlE

[-]SW 3.3.4.5 Protein acetylases/ deacetylases

[-]SW 3.3.4.6 Protein acetylase/ deacetylase/ based on similarity

[-]SW 3.3.4.7 Protein deaminase

[-]SW 3.3.4.8 Protein modification/ other

cheR	comQ	gsaB	pcp	prmC	yaaO	yfkA
ymfI	ynbB	yolJ	yqeT	ywlG	yydG

[-]SW 3.3.6 Protein secretion/ based on similarity

[-]SW 3.3.7.1 Protein quality control

[-]SW 3.3.7.2 Extracellular feeding proteases

[-]SW 3.3.7.3 Proteolysis during sporulation/ germination

[-]SW 3.4 Regulation of gene expression

abbA	abh	abrB	acoR	adaA	adeR	adhR
ahrC	alaR	alsR	ansR	araR	arfM	arsR
ascR	aseR	azlB	bceR	bceS	bglP	birA
bkdR	bltR	bmrB	bmrR	bofA	bofC	bsdA
bslA	bsrA	bsrB	btr	catR	ccpA	ccpB
ccpC	ccpN	cggR	cheA	cheV	cheY	chrS
citB	citR	citS	citT	codY	comA	comK
comP	comQ	comX	crh	csfB	csoR	csrA
cssR	cssS	ctpB	ctsR	cymR	cysK	cysL
czrA	dctR	dctS	degQ	degR	degS	degU
deoR	desK	desR	dnmA	dtrR	ecsA	ecsB
exuR	fadR	fapR	fatR	fin	flgM	fnr
frlR	fruR	ftsE	ftsX	fur	gabR	gamR
ganR	gbsR	gerE	gerR	glcR	glcT	glnA
glnK	glnL	glnR	glpP	gltC	gltR	glvR
gmuR	gntR	gudB	gutR	hprK	hprT	hrcA
hutP	hxlR	hypR	immA	immR	iolQ	iolR
kapB	kapD	kbaA	kdgR	kinA	kinB	kinC
kinD	kinE	kipR	levE	levR	lexA	liaF
liaR	liaS	licB	licR	licT	lipA	lmrA
lnrJ	lnrK	lrpA	lrpB	lutR	luxS	lytS
lytT	malK	malR	manP	manR	mcsA	mcsB
mdtR	melR	mgsR	mhqR	mntR	mta	mtlA
mtlR	mtrB	murR	nadR	nagR	natK	natR
nrdR	nrgB	nsrR	ntdR	obg	ohrR	opcR
oppA	oppB	oppC	oppD	oppF	padR	paiB
pamR	pepF	perR	phoP	phoR	phrA	phrC
phrE	phrF	phrG	phrH	phrI	phrK	pksA
prsW	psdR	psdS	ptsG	ptsH	pucR	purR
putR	pxpB	pxpC	pyrR	qdoR	rapA	rapB
rapC	rapD	rapE	rapF	rapG	rapH	rapI
rapJ	rapK	rasP	rbsR	remA	resD	resE
rex	rghR	rhaR	rhgR	rmgR	rocG	rocR
rok	rplT	rsbP	rsbQ	rsbR	rsbRB	rsbRC
rsbRD	rsbS	rsbT	rsbU	rsbV	rsbW	rsbX
rsfA	rsgI	rsiO	rsiV	rsiW	rsiX	rsoA
rtpA	S1290	sacP	sacT	sacX	sacY	salA
scoC	sda	sdpR	senS	sigA	sigB	sigD
sigE	sigF	sigG	sigH	sigI	sigK	sigKC
sigL	sigM	sigO	sigV	sigW	sigX	sigY
sigZ	sinI	sinR	sivA	sivC	sknR	slrA
slrR	splA	spo0A	spo0B	spo0E	spo0F	spoIIAA
spoIIAB	spoIIE	spoIIGA	spoIIIAA	spoIIID	spoIIR	spoIVB
spoIVCA	spoIVFA	spoIVFB	spoVT	spx	swrA	swrAA/2
swrB	thrR	tilS	tnrA	treR	walH	walI
walK	walR	whiA	xpf	xre	xylR	yaaT
yazB	ybdJ	ybdK	ybfI	ybfP	ybzH	ycbG
ycbL	ycbM	yceK	ycgE	ycgK	yclJ	yclK
ycnC	ycnK	ycxD	yczG	ydeB	ydeC	ydeE
ydeF	ydeL	ydeP	ydeS	ydfD	ydfF	ydfH
ydfI	ydfL	ydgC	ydgG	ydgJ	ydhC	yerC
yerO	yesM	yesN	yetI	yetL	yezB	yezC
yezE	yfiF	yfiR	yfiV	yfmP	ygzD	yhbI
yhcF	yhcY	yhcZ	yhdI	yhdK	yhdL	yhdQ
yhgD	yhjH	yisI	yisP	yisR	yisV	yizB
ykoG	ykoH	ykoM	ykrK	ykvN	ykvZ	ylaC
ylaD	ylbF	ymcA	ymfC	yneI	ynzD	yoaU
yobD	yobQ	yobS	yodB	yofA	yonR	yopO
yopS	yotL	yozG	yplP	ypoP	yqaF	yqaG
yqfL	yraN	yrdQ	yrkP	yrkQ	ysdB	ysfB
ysmB	ytcD	ytoI	ytrA	ytvA	ytzE	yusT
yuzN	yvaF	yvaO	yvaV	yvbU	yvdE	yvdT
yvfT	yvfU	yvkB	yvrG	yvrHb	yvzC	ywbI
ywcC	ywhA	ywoH	ywpD	ywqM	ywzG	yxaD
yxbF	yxdJ	yxdK	yxjL	yxjM	yxjO	yxlC
yxlD	yyaN	yybA	yybE	yydF	yydG	yydH
yydI	yydJ	yydK	zur

[-]SW 3.4.1.1 Sigma factors

rsoA	sigA	sigB	sigD	sigE	sigF	sigG
sigH	sigI	sigK	sigKC	sigL	sigM	sigO
sigV	sigW	sigX	sigY	sigZ	xpf	ylaC

[-]SW 3.4.2 Transcription factors and their control

abbA	acoR	adaA	adeR	adhR	ahrC	alaR
alsR	ansR	araR	arfM	arsR	ascR	aseR
azlB	bceR	bceS	bglP	birA	bkdR	bltR
bmrR	bsdA	btr	catR	ccpA	ccpB	ccpC
ccpN	cggR	cheA	cheV	cheY	chrS	citR
citS	citT	codY	comA	comK	comP	crh
csoR	cssR	cssS	ctsR	cymR	cysK	cysL
czrA	dctR	dctS	degQ	degR	degS	degU
deoR	desK	desR	dtrR	exuR	fadR	fapR
fatR	fnr	frlR	fruR	fur	gabR	gamR
ganR	gbsR	gerE	gerR	glcR	glcT	glnA
glnK	glnL	glnR	glpP	gltC	gltR	glvR
gmuR	gntR	gudB	gutR	hprK	hprT	hrcA
hxlR	hypR	immA	immR	iolQ	iolR	kdgR
kinA	kinB	kinC	kinD	kinE	kipR	levE
levR	lexA	liaF	liaR	liaS	licB	licR
licT	lmrA	lnrJ	lnrK	lrpA	lrpB	lutR
lytS	lytT	malK	malR	manP	manR	mcsA
mcsB	mdtR	melR	mgsR	mhqR	mntR	mta
mtlA	mtlR	mtrB	murR	nadR	nagR	natK
natR	nrdR	nrgB	nsrR	ntdR	ohrR	opcR
padR	paiB	pamR	perR	phoP	phoR	phrA
phrC	phrE	phrF	phrG	phrH	phrI	phrK
pksA	psdR	psdS	ptsG	ptsH	pucR	purR
putR	pyrR	qdoR	rapA	rapB	rapC	rapD
rapE	rapF	rapG	rapH	rapI	rapJ	rapK
rbsR	remA	resD	resE	rex	rghR	rhaR
rhgR	rmgR	rocG	rocR	rok	rtpA	sacP
sacT	sacX	sacY	salA	scoC	sdpR	senS
sinI	sinR	sknR	slrA	slrR	splA	spo0A
spoIIID	spoVT	spx	swrA	swrAA/2	thrR	tilS
tnrA	treR	walH	walI	walK	walR	whiA
xre	xylR	yazB	ybdJ	ybdK	ybfI	ybfP
ybzH	ycbG	ycbL	ycbM	yceK	ycgE	ycgK
yclJ	yclK	ycnC	ycnK	ycxD	yczG	ydeB
ydeC	ydeE	ydeF	ydeL	ydeP	ydeS	ydfD
ydfF	ydfH	ydfI	ydfL	ydgC	ydgG	ydgJ
ydhC	yerC	yerO	yesM	yesN	yetL	yezC
yezE	yfiF	yfiR	yfiV	yfmP	ygzD	yhbI
yhcF	yhcY	yhcZ