CRISPRon(v1.0): CRISPR-Cas9 guide efficiency prediction
Software
For the stand-alone version of the CRISPRon software, you can download the training code, evaluation code and models. The software is released under the the GNU Affero General Public License version 3 or later.
- 2021-04-26: Initial release crispron-1.0.tar.gz
Instructions for installing and running the software is included in the README file also available with the downloaded software.
Data
Data used for training of CRISPRon can be downloaded here.
Citing CRISPRon
If you are using the results of the CRISPRon in your publication, please cite:
CRISPRon/off: CRISPR/Cas9 on- and off-target gRNA design
Anthon C, Corsi GI, Gorodkin J*
Bioinformatics. 2022 Dec 13;38(24):5437-5439
[ PubMed | Paper | Webserver ]
Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning
Xiang X†, Corsi GI†, Anthon C†, Qu K†, Pan X, Liang X, Han P, Dong Z, Liu L, Zhong J, Ma T, Wang J, Zhang X, Jiang H, Xu F, Liu X, Xu X, Wang J, Yang H, Bolund L, Church GM, Lin L, Gorodkin J*, Luo Y*
Nat Commun. 2021 May 28;12(1):3238
[ PubMed | Paper | Webserver | Software ]
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