Non-Coding RNA Search

4cip-UMC-p4civp1-005-e01

Sequence:


               
               CAAGTCTTGGAGGGCCGGGAGGTACCTGGAGTGATCCAGTCCTTTCCCTTGGTAGCTTTT
TGTGTTCAGATGAAGCAATTGAGACCCAGCAAGTGGACTTGGCTCCTCCAAGCTCACCCA
GTGGAATTGTTTCCCCTCTTTCAGGACAGCAGCCTAATGCACAGAGTCTTGTTTGTGTGT
GAAAGACACAGGCACTTTACAACCGTGGGTTCCTTTCACTGTGTGGAGCTTCACATATTA
AAAGTACATTTAAAAGAATATTCTGCATTGCAAGCTTTCCCCTAATTGTGACTGGCCTTC
TCCCAAGTTAGTTTGAGCTATTTTGGTGAGGTTTTATAGTGATTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTCTTGGAGGGCCGGGAGGTACCTGGAGTGATCCAGTCCTTTCCCTTGGTAGCTTTT
TGTGTTCAGATGAAGCAATTGAGACCCAGCAAGTGGACTTGGCTCCTCCAAGCTCACCCA
GTGGAATTGTTTCCCCTCTTTCAGGACAGCAGCCTAATGCACAGAGTCTTGTTTGTGTGT
GAAAGACACAGGCACTTTACAACCGTGGGTTCCTTTCACTGTGTGGAGCTTCACATATTA
AAAGTACATTTAAAAGAATATTCTGCATTGCAAGCTTTCCCCTAATTGTGACTGGCCTTC
TCCCAAGTTAGTTTGAGCTATTTTGGTGAGGTTTTATAGTGATTTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               3-118, - strand, RNAz p=0.829137

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-118, - strand, RNAz p=0.829137

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               3-345, gnl|bosTau2|chr2 (19425581-19425235)
               

               
               3-345, gnl|canFam2|chr10 (36793250-36792990)
               

               
               3-345, gnl|dasNov1|scaffold_1404 (85310-85046)
               

               
               3-345, gnl|hg17|chr12 (103522184-103522450)
               

               
               3-345, gnl|Hg17|chr12 (103522194-103522540)
               

               
               3-345, gnl|mm7|chr10 (82649501-82649711)
               

               
               3-345, gnl|Mm7|chr10 (82649487-82649806)
               

               
               3-345, gnl|oryCun1|scaffold_214300 (86085-86318)
               

               
               3-345, gnl|panTro1|chr10 (106004772-106005038)
               

               
               3-345, gnl|rheMac2|chr11 (105739860-105740126)
               

               
               3-345, gnl|rn3|chr7 (22843357-22843114)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-345, gnl|bosTau2|chr2 (19425581-19425235)
               

               
               3-345, gnl|canFam2|chr10 (36793250-36792990)
               

               
               3-345, gnl|dasNov1|scaffold_1404 (85310-85046)
               

               
               3-345, gnl|hg17|chr12 (103522184-103522450)
               

               
               3-345, gnl|Hg17|chr12 (103522194-103522540)
               

               
               3-345, gnl|mm7|chr10 (82649501-82649711)
               

               
               3-345, gnl|Mm7|chr10 (82649487-82649806)
               

               
               3-345, gnl|oryCun1|scaffold_214300 (86085-86318)
               

               
               3-345, gnl|panTro1|chr10 (106004772-106005038)
               

               
               3-345, gnl|rheMac2|chr11 (105739860-105740126)
               

               
               3-345, gnl|rn3|chr7 (22843357-22843114)

	3-345, gnl\|bosTau2\|chr2 (19425581-19425235)
	3-345, gnl\|canFam2\|chr10 (36793250-36792990)
	3-345, gnl\|dasNov1\|scaffold_1404 (85310-85046)
	3-345, gnl\|hg17\|chr12 (103522184-103522450)
	3-345, gnl\|Hg17\|chr12 (103522194-103522540)
	3-345, gnl\|mm7\|chr10 (82649501-82649711)
	3-345, gnl\|Mm7\|chr10 (82649487-82649806)
	3-345, gnl\|oryCun1\|scaffold_214300 (86085-86318)
	3-345, gnl\|panTro1\|chr10 (106004772-106005038)
	3-345, gnl\|rheMac2\|chr11 (105739860-105740126)
	3-345, gnl\|rn3\|chr7 (22843357-22843114)