Known non-coding RNAs and cis-acting RNAs


Conread nameConread startConread endRNA annotation
Ss1.1-Pig4-TMW8008G10.5821873AJ012495
Ss1.1-Tra1-TCH01E080001.513072048AL050186
Ss1.1-Ovi2-UMC-peov3-003-f02.3745924AL137373
Ss1.1-rpro14_n7.5.59601569AY295762
Ova2-C0003272_J0511113BC2
Ss1.1-MPL-MPL384_4_A01.5179310E3
Ss1.1-Pig4-TMW8051D13.53521091L08437
Ss1.1-Pig3-SRG8001L19.38671111L39924
Ss1.1-OvaP-UMC-pputal4-001-a11.3141224let-7b
Ss1.1-OvaP-UMC-pputal4-001-a11.3141224MI0000063
Ss1.1-Pig2-80M18.5373474MI0000454
rnep33c_i11.y112123MI0000695
Ss1.1-Pig2-138B11.5.5476563MI0000865
rplac_6675.y1508592MI0001447
reep15c_p11.y1184291MI0001647
Ss1.1-rfty524b_p13.5159MI0002440
Ss1.1-Pig4-TMW8022F14.3174283MI0002441
Ss1.1-unkn-MI-P-NA-aea-d-09-1-UM.s1.ab1.363144MI0002456
Ss1.1-rpldo0104_e22.5487573MI0002536
Pig1-58H11463530MI0002640
Ss1.1-rhyp32c_g1.5820913MI0003574
Pig2-36J18242345MI0004637
Ss1.1-rpigcb_15937.573158MI0004756
Ss1.1-rpldo0104_e22.5487573miR-133a
Ss1.1-Pig2-80M18.5373474miR-137
Ss1.1-rpigcb_15937.573158miR-145
Ss1.1-unkn-MI-P-NA-aea-d-09-1-UM.s1.ab1.363144miR-186
rnep33c_i11.y112123miR-210
Ss1.1-Pig4-TMW8022F14.3174283miR-214
Pig1-58H11463530miR-24
Ss1.1-Pig2-138B11.5.5476563miR-29c
Ss1.1-Liv1-LVRM10156E03.53155RF00002
Tra1-TCH01E1000313151RF00002
Ss1.1-Pig3-SRG8017G22.51149RF00002
Ss1.1-Liv1-LVRM10156E03.54155RF00002;5_8S_rRNA;
Ss1.1-Pig3-SRG8017G22.51149RF00002;5_8S_rRNA;
Tra1-TCH01E10003182151RF00002;5_8S_rRNA;
unkn-AR15G1120452RF00003
Bra1-olf_091_B071186RF00004
Bra1-olf_141_F032191RF00004
Bra1-olf_141_F032189RF00004;U2;
Bra1-olf_091_B071186RF00004;U2;
Ss1.1-4civ-UMC-p4civv1-013-g06.3108177RF00005
4civ-UMC-p4civv1-001-d09274346RF00005
Ss1.1-rpliv0133_a11.5521592RF00005
Ss1.1-Pig4-TMW8060L12.3105176RF00005
Pig1-76I17409341RF00005
bliv-UMC-pblivv4-010-c04376308RF00005
Ova1-OVRM10096A05478550RF00005
Ss1.1-Utr1-UTR010005F03.5327257RF00005
Ss1.1-rcst32_e14.5408499RF00005
Ss1.1-Ova1-OVR010008B07.5258187RF00005
Ss1.1-4civ-UMC-p4civv1-001-g10.3.5204131RF00005
rpigcf0_000975.y1213284RF00005
rcsk18_h10.y1271343RF00005
unkn-SGD602702362.R1313242RF00005
rspc001_l6.y1506438RF00005
Ss1.1-rcsp32b_d13.5193122RF00005
Ss1.1-recc2803c_k24.5125199RF00005
Lym2-sn68_H11.f15079RF00005
Ss1.1-Emb1-C0005216_A11.5100173RF00005
rnmm34c_n10.y1340272RF00005
Lym1-jns101_B02.f9928RF00005
Tes1-TES01F060086263334RF00005
rmcp35c_m22.y1452523RF00005
Tra1-TCH01E040072283355RF00005
Ss1.1-Ovi1-UMC-pd3ov3-007-b08.3219290RF00005
Ss1.1-4civ-UMC-p4civv1-001-f04.3304377RF00005
raor018_m9r1.y1346275RF00005
Ss1.1-Pig2-115H17.5388459RF00005
rmed15c_m3.y1374306RF00005
Lym2-sn74_F12.f875RF00005
Tra1-TCH01C050026368439RF00005
mCP0-MI-P-CP0-nvm-e-05-0-UI.s1171243RF00005
blip-UMC-pblivp1-008-a08277348RF00005
rrec09_m18.y1443375RF00005
Pig1-62L1444116RF00005
Lym2-sn14_C10.f876RF00005
Ss1.1-rcst13_d20.5187259RF00005
rnbm02b_p20.y1499431RF00005
Pig1-118J16469398RF00005
Ovi1-UMC-pd3ov3-003-h1132104RF00005
Ss1.1-Pig4-TMW8005C03.5428357RF00005
Mixc-0029,c19604676RF00005
rmgp21_l22.y1501433RF00005
rrec16_m10.y1442374RF00005
LyN1-MLN01F120002347416RF00005
Ss1.1-Pig3-SRG8024O17.3840911RF00005
Lng1-LNG010004H121586RF00005
rcut18_m14.y1269197RF00005
Ova1-OVRM10193F07291221RF00005
Ss1.1-rhlv29b_b22.5412340RF00005
Ss1.1-rcbl0_020936.5314384RF00005
rpfco0107_k17.y1559491RF00005
Ss1.1-4cip-UMC-p4civp1-008-a10.3197126RF00005
Ss1.1-rmga12_b5.569140RF00005
Pig1-60O13428499RF00005
End3-UMC-pd6end2-006-c07366298RF00005
Tra1-TCH01B04006410939RF00005
Ss1.1-Pig4-TMW8047A09.3185117RF00005
rpigcf0_003427.y1174RF00005
rsag15_o11.y1401333RF00005
rsag06_c12.y1411343RF00005
4cip-UMC-p4civp1-020-f07284356RF00005
rcst37_n11.y189181RF00005
Ss1.1-Mixc-0035,e09.333105RF00005
rsug22_o24.y1599531RF00005
rsme31_p24.y157129RF00005
rpgl25_i2.y1417487RF00005
Lng1-LNG010097G12474403RF00005
rhyp09c_n15.y1526458RF00005
Pig1-57I111889RF00005
Ss1.1-Pig4-TMW8037H10.5917988RF00005
Ss1.1-Spl1-SPL01E120093.5764835RF00005
Ova1-OVRM10212D12262334RF00005
rjej28b_n20.y1465397RF00005
rsme22_d14.y115107RF00005
Tes1-TES01A010062133204RF00005
LyN1-MLN01F120023208280RF00005
rrec35_e18.y1440372RF00005
Pla1-C0000042_E1941112RF00005
LyN1-MLN01C030075498571RF00005
4civ-UMC-p4civv1-018-e10999RF00005
OvF2-UMC-pd0fol-005-e03357289RF00005
Mixc-0036c23467538RF00005
rcmu31_j11.y1184257RF00005
Ss1.1-Pig4-TMW8001G07.5812883RF00005
Pla1-C0000028_E23235163RF00005
OvF2-UMC-pd0fol-009-f10369301RF00005
unkn-CTK602768742.R114572RF00005
Utr1-UTR010045E0214371RF00005
rpigcf0_003280.y1228160RF00005
rhlv02b_m18.y1337269RF00005
Ova1-OVRM10217H0410312RF00005
Ss1.1-Pig4-TMW8055P08.3570499RF00005
Ss1.1-Utr1-UTR010034B08.566137RF00005
Ss1.1-Mus1-POSM0100007_F06.3731RF00005
rpfco0118_k21.y1406338RF00005
rpigcf0_003236.y1357286RF00005
rtes09_h12.y1182274RF00005
rcte10_l1.y1982RF00005
rhyp26c_k8.y1498430RF00005
Ss1.1-rcbl0_022857.5490563RF00005
Liv1-LVRM10076A06233305RF00005
rcte30_c24.y150122RF00005
rsag011_e16.y1410342RF00005
rlnt32c_f15.y1336268RF00005
Pig3-SRG8022O21516587RF00005
Ss1.1-Emb1-C0005191_I07.5420492RF00005
uFN-UNL-P-FN-aw-d-09-0-UNL.s1246319RF00005
Pig1-50L20511439RF00005
rspc028_j22.y1442374RF00005
Ss1.1-Emb1-C0005213_H17.5593666RF00005
Mixn-0008o0134107RF00005
unkn-MI-P-NA-aem-e-02-1-UM.s1100171RF00005
Ss1.1-4civ-UMC-p4civv1-015-h09.3264194RF00005
Pig3-SRG8004O14550479RF00005
Ss1.1-rsin08_p7.510128RF00005
Liv1-LVRM1G04019710635RF00005
blip-UMC-pblivp1-020-c04179250RF00005
rebs31c_n4.y1504436RF00005
Spl1-SPL01C030064309380RF00005
recc2812c_n15.y1222293RF00005
rpliv0139_j20.y1374304RF00005
Ss1.1-LyN1-MLN01D050019.511461075RF00005
Ova2-C0003264_H16198130RF00005
Utr2-C0001795_G08361435RF00005
raor015_p22r1.y177150RF00005
rebs27c_n7.y1534466RF00005
rhyp10c_e11.y1438370RF00005
Ss1.1-Pig4-TMW8012E05.3792864RF00005
Ss1.1-recc2812c_b23.5688615RF00005
Ss1.1-Pig3-SRG8015F02.3267194RF00005
Pig2-119B05516445RF00005
rpty630b_l2.y1437369RF00005
rplac_18081.y1223152RF00005
Emb1-C0005196_B18412484RF00005
unkn-ESTPBL195195266RF00005
rnco1921b_n22.y2400332RF00005
Ss1.1-Pig4-TMW8060O06.5835906RF00005
Ss1.1-rpigcb_17872.5594521RF00005
unkn-ESTPBL20310736RF00005
rpigca0_011734.y116072RF00005
risp15_a15.y1524456RF00005
Mixc-0040,g04181252RF00005
Ss1.1-4civ-UMC-p4civv1-017-g05.3171RF00005
Thy1-THY010040G04476545RF00005
rmed07c_g1.y1528460RF00005
Ss1.1-4civ-UMC-p4civv1-001-f04.3305375RF00005;tRNA;
rlnt33c_i7.y1369301RF00005;tRNA;
risp15_a15.y1524456RF00005;tRNA;
Ova2-C0003271_C13391458RF00005;tRNA;
Pig1-76I17409341RF00005;tRNA;
Ova2-C0003265_N22328392RF00005;tRNA;
Ss1.1-4cip-UMC-p4civp1-002-e08.3170RF00005;tRNA;
rpty630b_l2.y1369437RF00005;tRNA;
rcte10_l1.y11282RF00005;tRNA;
rnbm02b_p20.y1499431RF00005;tRNA;
Ss1.1-4civ-UMC-p4civv1-013-g06.3108176RF00005;tRNA;
Ova2-C0003104_C0488152RF00005;tRNA;
rpfco0118_k21.y1406338RF00005;tRNA;
rrec09_m18.y1443375RF00005;tRNA;
rrec16_m10.y1442374RF00005;tRNA;
rsag15_o11.y1401333RF00005;tRNA;
Pig1-57I111879RF00005;tRNA;
rhyp26c_k8.y1498430RF00005;tRNA;
rspc028_j22.y1442374RF00005;tRNA;
rnco1921b_n22.y2400332RF00005;tRNA;
End3-UMC-pd6end2-006-c07366298RF00005;tRNA;
Tra1-TCH01E040072104185RF00005;tRNA;
rmgp21_l22.y1501433RF00005;tRNA;
rmed07c_g1.y1528460RF00005;tRNA;
Ova2-C0003260_A08381452RF00005;tRNA;
Ss1.1-4civ-UMC-p4civv1-001-g10.3.5121191RF00005;tRNA;
Ova2-C0003272_K23159RF00005;tRNA;
rlnt32c_f15.y1336268RF00005;tRNA;
rpgl25_i2.y1417487RF00005;tRNA;
rsag029_n21.y1406338RF00005;tRNA;
Ova2-C0003272_J0540105RF00005;tRNA;
bliv-UMC-pblivv4-010-c04308376RF00005;tRNA;
rsag06_c12.y1411343RF00005;tRNA;
rsag001_p8.y1501433RF00005;tRNA;
Ss1.1-4civ-UMC-p4civv1-017-g05.3170RF00005;tRNA;
rebs27c_n7.y1533466RF00005;tRNA;
rsag10_m13.y1366298RF00005;tRNA;
Ss1.1-Ova2-C0003277_K20.593158RF00005;tRNA;
Ss1.1-4civ-UMC-p4civv1-015-h09.390160RF00005;tRNA;
rhyp09c_n15.y1526458RF00005;tRNA;
rnmm34c_n10.y1272340RF00005;tRNA;
OvF2-UMC-pd0fol-009-f10369301RF00005;tRNA;
rmed15c_m3.y1374306RF00005;tRNA;
rhlv02b_m18.y1337269RF00005;tRNA;
rill313b_i23.y1525463RF00005;tRNA;
Ss1.1-4cip-UMC-p4civp1-009-c11.3170RF00005;tRNA;
rsug22_o24.y1599531RF00005;tRNA;
rhyp10c_e11.y1438370RF00005;tRNA;
Lym2-sn60_E11.f169231RF00005;tRNA;
rebs31c_n4.y1504436RF00005;tRNA;
Fet1-UMC-pd20fet-010-h12290358RF00005;tRNA;
rspc001_l6.y1506438RF00005;tRNA;
Ss1.1-4cip-UMC-p4civp1-008-a10.3350432RF00005;tRNA;
rrec35_e18.y1440372RF00005;tRNA;
rsag011_e16.y1410342RF00005;tRNA;
Ss1.1-4civ-UMC-p4civv1-005-a05.3170RF00005;tRNA;
rjej28b_n20.y1465397RF00005;tRNA;
4civ-UMC-p4civv1-018-e101399RF00005;tRNA;
rpfco0107_k17.y1559491RF00005;tRNA;
rcte30_c24.y150122RF00005;tRNA;
OvF2-UMC-pd0fol-005-e03355289RF00005;tRNA;
Thy1-THY010031G0311225RF00012
Thy1-THY010058F101105RF00020
Ss1.1-Pig3-SRG8020F17.36971051RF00024
Ss1.1-Pig3-SRG8020F17.3577931RF00024;Telomerase-vert;
Pla1-C0000031_K16233339RF00026
End1-UMC-pd3end3-009-g12267370RF00026
Fet1-UMC-pd20fet-015-b04275386RF00026
Ova1-OVRM10087E0995201RF00026
Bla1-UMC-pcrybst1-008-g04172275RF00026
Ss1.1-Pig3-SRG8023E21.5487593RF00026
Ss1.1-Bla1-UMC-pcrybst1-014-d08.3184309RF00026
Liv1-LVRM10077F05660763RF00026
rjej01b_d11.y1294215RF00026;U6;
rtes07_n1.y1190RF00026;U6;
rnco1919b_l17.y1180RF00026;U6;
Ss1.1-OvaP-UMC-pputal4-001-a11.3140225RF00027
Pig2-64M10231172RF00031
Ss1.1-rcli34b_d2.5478542RF00031
Ss1.1-Ova1-OVR010002E09.5.11013551418RF00031
Ss1.1-Ova1-OVR010031C06.5599664RF00031
Ss1.1-Pig4-TMW8017I18.59701036RF00031
rfce21c_n24.y1209143RF00031
rcki020_e1.y187148RF00031
Ss1.1-LyN1-MLN01A050104.5745807RF00031
Ss1.1-LyN1-MLN01A060101.5733799RF00031
Ss1.1-Mixn-0008l18.5339401RF00031
Ss1.1-Spl1-SPL01A030098.5.511571222RF00031
Ss1.1-rret29_k14.512966RF00031
Lym1-jns09_A03.f199133RF00031
Ss1.1-Pig4-TMW8006M06.3253317RF00031
Ss1.1-Pig4-TMW8058K02.3472409RF00031
Lng1-LNG010069A01265197RF00031
Ss1.1-Pig4-TMW8037K22.5828890RF00031
Ova2-C0003273_D18144203RF00031
Ova1-OVRM10039C05655594RF00031
Ss1.1-LyN1-MLN01E110102.5557623RF00031
Ss1.1-ruio20_b4.514501513RF00031
Ss1.1-rpigcf0_008589.5473405RF00031
Ss1.1-Utr1-UTR010024B06.5800865RF00031
rtes22_i9.y1310375RF00031
Ss1.1-Emb1-C0005217_H12.5224156RF00031
Ss1.1-recc2834c_f22.5382449RF00031
Ss1.1-rmcp01c_l22.5311375RF00031
Ss1.1-Liv1-LVR010052B09.5677741RF00031
Ss1.1-rpfco0137_g9.5248182RF00031
Ss1.1-Pig3-SRG8015D07.3112172RF00031
Ss1.1-Tra1-TCH01F010075.510451112RF00031
rtes39_c20r1.y1652RF00031
Ss1.1-Tra1-TCH01H030062.510161075RF00031
Ss1.1-Ova1-OVRM10182G05.5200134RF00031
Lym2-sn30_A02.f333273RF00031
rmed33c_h15.y1336274RF00031
Ss1.1-Tra1-TCH01E080083.5.12013521415RF00031
Ss1.1-LyN1-MLN01A060101.5733799RF00031;SECIS;
Ss1.1-LyN1-MLN01A050104.5745807RF00031;SECIS;
Ss1.1-Liv1-LVR010052B09.5677741RF00031;SECIS;
Ss1.1-recc2834c_f22.5382449RF00031;SECIS;
Ss1.1-ruio20_b4.514501512RF00031;SECIS;
Ss1.1-Mixn-0033l14.5472497RF00032
Ss1.1-rnmm24c_c7.5477502RF00032
Ss1.1-Mixn-0033o14.5483508RF00032
Ss1.1-Pig4-TMW8051I17.5691716RF00032
Ss1.1-Pig4-TMW8017B10.3448473RF00032
Ss1.1-Pig1-21F01.5758783RF00032
Ss1.1-recc2812c_p13.5437462RF00032
Ss1.1-Liv1-LVRM10130D03.5433458RF00032
Ss1.1-rnco1935b_c17.5428453RF00032
Ss1.1-Spl1-SPL010041B12.5753778RF00032
Ss1.1-Mixn-0010d15.5356381RF00032
Ss1.1-Thy1-THY010084F12.5454479RF00032
Ss1.1-Mixc-0029b12.3459484RF00032
Ss1.1-LyN1-MLN01E010050.5478503RF00032
Ss1.1-rplac_18183.5462487RF00032
Ss1.1-Utr1-UTR010051B01.5.52857RF00037
Ss1.1-rgul0108_c18.5.5423449RF00037
Ss1.1-Spl1-SPL01F070066.5.56493RF00037
rjej40b_b6.y11039RF00037
rcov08b_g20.y1130RF00037
Ss1.1-Lng1-LNG010007E01.5159188RF00037
Ss1.1-Pig4-TMW8033D20.317991773RF00037
Ss1.1-rspl35_o21.5476450RF00037
rpigca_2218.y169147RF00055
rpigca_2218.y169147RF00055;snoZ37;
Ss1.1-Pig2-122E16.592260RF00077;SraB;
Ss1.1-Mixn-0034a02.5164230RF00089
Ss1.1-MPL-MPL384_4_A01.5180310RF00092
Utr1-UTR010034F06522808RF00100
Lym2-sn10_G05.f273196RF00109
Ss1.1-Utr1-UTR010044D06.515921669RF00109
mO3-MI-P-O3-aby-d-06-1-UM.s1103180RF00109
Pig2-67F09286209RF00109
Ss1.1-Utr2-C0001810_B17.5608742RF00156
Ss1.1-Utr1-UTR010016D01.5272351RF00157
Pig1-2O1512203RF00174
Pig1-2O1512203RF00174;Cobalamin;
Pig1-58H11463530RF00178
Pig1-58H11463530RF00178;mir-24;
Ss1.1-rplun0125_o10.5740809RF00179
Pig3-SRG8004F17175RF00181
Mixn-0015d02289363RF00181
Ss1.1-unkn-F_2_A09.511723RF00183
Ss1.1-unkn-F_2_A09.523117RF00183;G-CSF_SLDE;
rcol1030b_i17.y180148RF00212
Ss1.1-Pig4-TMW8046O15.527356RF00216;IRES_c-myc;
Ss1.1-Spl1-SPL010010E02.553200RF00232;Spi-1;
Ss1.1-rpgl07_c11.5543474RF00240
Ss1.1-rpgl07_c11.5474543RF00240;RNA-OUT;
Ss1.1-Pig4-TMW8029D06.3562703RF00272
Ss1.1-Emb1-C0005215_M24.5664733RF00278
Pig1-121B20323400RF00279
Ss1.1-Pig4-TMW8030H23.511131188RF00281
Ss1.1-rcad24b_l22.563128RF00289;snoZ12;
Ss1.1-Pig4-TMW8030H23.5411486RF00309
Ss1.1-LyN1-MLN01H080062.5.5273331RF00381;Antizyme_FSE;
Ss1.1-Pig4-TMW8041I04.3275327RF00381;Antizyme_FSE;
Ss1.1-Lym1-jns34_A02.f.546187RF00394
Ss1.1-rfty515b_e21.5280412RF00403
Lng1-LNG010025E01104238RF00414
Ss1.1-Pig4-TMW8019D10.3202323RF00421
Ss1.1-rpldo0104_e22.5486574RF00446
Ss1.1-rpldo0104_e22.5487574RF00446;mir-133;
Thy1-THY010037H12162364RF00457
Ss1.1-rdbla0117_b23.582195RF00485
rnmm27c_f4.y159172RF00485
Ss1.1-Pig3-SRG8005M11.5530640RF00485;K_chan_RES;
Ss1.1-Pig2-65E16.51109RF00485;K_chan_RES;
Ova2-C0003265_N22328395T3
Ova2-C0003264_H16130201T3
Ova2-C0003272_K23168T3
Ss1.1-Pey1-15B06.56641186TE18710
Ss1.1-rret20_p23.5652783U72
Ss1.1-Lng1-LNG010027D07.517301880Z70766