Non-Coding RNA Search

rpgl25_i2.y1

Sequence:


               
               GACTCGGGAAGAAGGTTCGGGCGGATCGTCTGTTCAAGGAAGGGTGGCCTCACCTGCGTC
TGACTCAGAGCCACAGAGAAAGTTCCAGCTTCTCCCAGCTGGTTCTAAAGGCCATCGGTG
GGGCAGAAGTCAGGTAGGGCAGTAACTTCTCAAAAGAACACCCTCCTGGGTTGAAGAAGG
CAGGTCTGAGTCCGGCACCTCCAGAAAAGCCCAAAGAAAATGTCACCATGGGAAGAGAGC
CATGGCCTCAAGGCCAAAGATTTAAATTTCTTAATCCTTAATATTTGCAGGGGAGGGGGT
TCTTGAAACATAAAGGCAGTATTATCAAAATTATAACTGAGAAGAACAGCTAGGAAGGGA
CCTAGGGCTAGGGATGATGTTAAGAGATCATGCTGCAAACAGCCGTTCCACAAGATgcat
tggtggttcagtggtagaattctcgcctgccacgcgggaggcccgggttcgattcccggc
caatgcacAAGGGTGTCTTTTCTTTCAGCAGCTTCAGTGATTTTAAAAAAGCTTTGTTTT
GTTTTTCCCCTACTAGGATTTGTGACAATGACATAAATAAAACCAGTTAAAGGCTAAAAA
AAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCGGGAAGAAGGTTCGGGCGGATCGTCTGTTCAAGGAAGGGTGGCCTCACCTGCGTC
TGACTCAGAGCCACAGAGAAAGTTCCAGCTTCTCCCAGCTGGTTCTAAAGGCCATCGGTG
GGGCAGAAGTCAGGTAGGGCAGTAACTTCTCAAAAGAACACCCTCCTGGGTTGAAGAAGG
CAGGTCTGAGTCCGGCACCTCCAGAAAAGCCCAAAGAAAATGTCACCATGGGAAGAGAGC
CATGGCCTCAAGGCCAAAGATTTAAATTTCTTAATCCTTAATATTTGCAGGGGAGGGGGT
TCTTGAAACATAAAGGCAGTATTATCAAAATTATAACTGAGAAGAACAGCTAGGAAGGGA
CCTAGGGCTAGGGATGATGTTAAGAGATCATGCTGCAAACAGCCGTTCCACAAGATgcat
tggtggttcagtggtagaattctcgcctgccacgcgggaggcccgggttcgattcccggc
caatgcacAAGGGTGTCTTTTCTTTCAGCAGCTTCAGTGATTTTAAAAAAGCTTTGTTTT
GTTTTTCCCCTACTAGGATTTGTGACAATGACATAAATAAAACCAGTTAAAGGCTAAAAA
AAAAAAAAAAAAAAAAAA

ncRNA annotation: 2 entry(ies)

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               417-487, RF00005;tRNA; (K00208.1/1-71), blast E-value=2e-33
               

               
               417-487, tRNA Gly : RF00005;tRNA; (K00208.1/1-71), RaveNnA Score=68.92

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               417-487, RF00005;tRNA; (K00208.1/1-71), blast E-value=2e-33
               

               
               417-487, tRNA Gly : RF00005;tRNA; (K00208.1/1-71), RaveNnA Score=68.92

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	417-487, RF00005;tRNA; (K00208.1/1-71), blast E-value=2e-33
	417-487, tRNA Gly : RF00005;tRNA; (K00208.1/1-71), RaveNnA Score=68.92