Non-Coding RNA Search

Ss1.1-rret20_p23.5

Sequence:


               
               GATGGTTTGTGTTGGATGATGGATATGTTAATGTTTTTAAGAGTAATTGGCTTTCTGTTT
GAAGGCCTTAAACTGACATTAGATCTGTTGAGAAAGGTAACATTTTATCTGTGTCACTTG
GGATGGTGTTTACTTGCCTTTTTTTGGTTCCCATAGGAAATCTGAAATAGAATATTATGC
CATGTTGGCCAAAACTGGTGTCCATCACTACAGTGGAAATAATATTGAATTGGGCACAGC
ATGTGGAAAATACTACAGAGTATGCACACTGGCTATCATTGATCCAGGTATGCTTTCAAA
TCATAAAATATGATTTATAAGTATTGTTACACATATGTCTTTCATTGCTAAATTCAAGTG
GTGAGAATCTGGATATAGGAAGGGATATCCTCCAGTTTTATTTCACAGAGAATCGATAAG
GTCACTACGTAATTGGCCTTTTATACATGAAATTCTTTTTATTTGAGATCTTGGGTTTTA
TTTCATAAAGCATCTAAGAAATGACGTAGGACCTTGGTAATTAAAATTATAAAGATGGAG
AATAATCAGATGAAATAGTAGAACAGATGGGTAAGTTAATTTGGGAAAAAGAAATGCCTA
CAAATAAAGTCATATTTTAAACTTAGAAATTTTTAGTTAATTCATAAAATACTGCGAATA
TTCTCGCTGTTCTGATTTTGTAATAATCAGGGCAGGCTAAACATTCGCTATATTAAGACC
ATGCATGTGTCCCCAGACCTAGTTCTTTCCCTAGGTCTGGTTGTATAAATGCTGGTGATA
AACCCAAGTCTGATACATATGATGCAGCTTACGTGGGAAATACCGGTATTTGATCTATCT
GAAAATGACAGCCTAGCTGGTGTAATAACTTTTGAAGATAACCATTGCTAATTTGATGAT
TACTTGCTGCCATTAAATGAGTTGTAAAATTACTGTGTTTTATCTTCTAGGTGATTCTGA
TATCATTAGAAGCATGCCAGAACAGACTGGTGAAAAGTAAATCATGCACAGTTTTTCTTT
AATAAAGCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGTTTGTGTTGGATGATGGATATGTTAATGTTTTTAAGAGTAATTGGCTTTCTGTTT
GAAGGCCTTAAACTGACATTAGATCTGTTGAGAAAGGTAACATTTTATCTGTGTCACTTG
GGATGGTGTTTACTTGCCTTTTTTTGGTTCCCATAGGAAATCTGAAATAGAATATTATGC
CATGTTGGCCAAAACTGGTGTCCATCACTACAGTGGAAATAATATTGAATTGGGCACAGC
ATGTGGAAAATACTACAGAGTATGCACACTGGCTATCATTGATCCAGGTATGCTTTCAAA
TCATAAAATATGATTTATAAGTATTGTTACACATATGTCTTTCATTGCTAAATTCAAGTG
GTGAGAATCTGGATATAGGAAGGGATATCCTCCAGTTTTATTTCACAGAGAATCGATAAG
GTCACTACGTAATTGGCCTTTTATACATGAAATTCTTTTTATTTGAGATCTTGGGTTTTA
TTTCATAAAGCATCTAAGAAATGACGTAGGACCTTGGTAATTAAAATTATAAAGATGGAG
AATAATCAGATGAAATAGTAGAACAGATGGGTAAGTTAATTTGGGAAAAAGAAATGCCTA
CAAATAAAGTCATATTTTAAACTTAGAAATTTTTAGTTAATTCATAAAATACTGCGAATA
TTCTCGCTGTTCTGATTTTGTAATAATCAGGGCAGGCTAAACATTCGCTATATTAAGACC
ATGCATGTGTCCCCAGACCTAGTTCTTTCCCTAGGTCTGGTTGTATAAATGCTGGTGATA
AACCCAAGTCTGATACATATGATGCAGCTTACGTGGGAAATACCGGTATTTGATCTATCT
GAAAATGACAGCCTAGCTGGTGTAATAACTTTTGAAGATAACCATTGCTAATTTGATGAT
TACTTGCTGCCATTAAATGAGTTGTAAAATTACTGTGTTTTATCTTCTAGGTGATTCTGA
TATCATTAGAAGCATGCCAGAACAGACTGGTGAAAAGTAAATCATGCACAGTTTTTCTTT
AATAAAGCCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61836833|ref|XP_599390.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836833|ref|XP_599390.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               673-824, + strand, RNAz p=0.999959

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               673-824, + strand, RNAz p=0.999959

ncRNA annotation: 1 entry(ies)

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               652-783, U72 (gnl|combinedlit|LIT1477), blast E-value=0

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               652-783, U72 (gnl|combinedlit|LIT1477), blast E-value=0

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-308, gnl|bosTau2|chr14 (39718327-39718636)
               

               
               1-308, gnl|Hg17|chr8 (99124345-99124030)
               

               
               1-308, gnl|Mm7|chr15 (34550486-34550201)
               


               
               328-563, gnl|bosTau2|chr14 (39718680-39718925)
               

               
               328-563, gnl|Hg17|chr8 (99123975-99123738)
               


               
               635-1026, gnl|bosTau2|chr10 (46432122-46432519)
               

               
               635-1026, gnl|Hg17|chr8 (99123619-99123202)
               

               
               635-1026, gnl|Mm7|chr15 (34549912-34549519)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-308, gnl|bosTau2|chr14 (39718327-39718636)
               

               
               1-308, gnl|Hg17|chr8 (99124345-99124030)
               

               
               1-308, gnl|Mm7|chr15 (34550486-34550201)
               


               
               328-563, gnl|bosTau2|chr14 (39718680-39718925)
               

               
               328-563, gnl|Hg17|chr8 (99123975-99123738)
               


               
               635-1026, gnl|bosTau2|chr10 (46432122-46432519)
               

               
               635-1026, gnl|Hg17|chr8 (99123619-99123202)
               

               
               635-1026, gnl|Mm7|chr15 (34549912-34549519)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hea (0.204499)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               ret (0.128733)

	1-308, gnl\|bosTau2\|chr14 (39718327-39718636)
	1-308, gnl\|Hg17\|chr8 (99124345-99124030)
	1-308, gnl\|Mm7\|chr15 (34550486-34550201)

	328-563, gnl\|bosTau2\|chr14 (39718680-39718925)
	328-563, gnl\|Hg17\|chr8 (99123975-99123738)

	635-1026, gnl\|bosTau2\|chr10 (46432122-46432519)
	635-1026, gnl\|Hg17\|chr8 (99123619-99123202)
	635-1026, gnl\|Mm7\|chr15 (34549912-34549519)