Non-Coding RNA Search

Ss1.1-Pig2-138B11.5.5

Sequence:


               
               GAATTGCAGCACAGCCAAAGGCCAACTGCAGAGGAGCAGCTGTTCTAGGACCAGCTCCCC
CCGCCTCCTCCACCTGAGCCGGTTCAAGAAGGGAAGAGCCTGAGCAGCACAGCACACGCT
CGAGTGTGTCGGGCGGTGCAGGGGGACAGTGCAGGGGTGGGAATCGTTCAAAGGAAACGC
AGGGGCTTGAGCAGGGCCGGGGCTTGCGAAGGGCTTCGTGTGCACAGGTAGCAGCAGCCA
CCAGCCGTAAGCCGCTGGTCAGACCTGTGCGCGCGTGGGTGGGCCGTGCTGAGCTGGGTG
CTCCACGGCCACAGGGACGGGAAGGCTCTGTCCCGGGAGGATTGTCACGTCGCAGCCGCA
CTGTCCTCCGGCTCCTAGCTGCCGGGAACCTTCAGCTGCAGGTTCCGCACAGCTGAAATC
GGACCTGCCTCCTGCAGTGCCATGGTGCTGGACCCCACCGAGCCCCGCTGGACCCATCTC
TTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTG
AAATCGGTTATGATGTAGGGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTGCAGCACAGCCAAAGGCCAACTGCAGAGGAGCAGCTGTTCTAGGACCAGCTCCCC
CCGCCTCCTCCACCTGAGCCGGTTCAAGAAGGGAAGAGCCTGAGCAGCACAGCACACGCT
CGAGTGTGTCGGGCGGTGCAGGGGGACAGTGCAGGGGTGGGAATCGTTCAAAGGAAACGC
AGGGGCTTGAGCAGGGCCGGGGCTTGCGAAGGGCTTCGTGTGCACAGGTAGCAGCAGCCA
CCAGCCGTAAGCCGCTGGTCAGACCTGTGCGCGCGTGGGTGGGCCGTGCTGAGCTGGGTG
CTCCACGGCCACAGGGACGGGAAGGCTCTGTCCCGGGAGGATTGTCACGTCGCAGCCGCA
CTGTCCTCCGGCTCCTAGCTGCCGGGAACCTTCAGCTGCAGGTTCCGCACAGCTGAAATC
GGACCTGCCTCCTGCAGTGCCATGGTGCTGGACCCCACCGAGCCCCGCTGGACCCATCTC
TTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTG
AAATCGGTTATGATGTAGGGGGAA

ncRNA annotation: 2 entry(ies)

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               476-563, miR-29c (gnl|combinedlit|LIT2927), blast E-value=9.80909e-45
               

               
               476-563, MI0000865 (rno-mir-29c), blast E-value=4.2039e-45

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               476-563, miR-29c (gnl|combinedlit|LIT2927), blast E-value=9.80909e-45
               

               
               476-563, MI0000865 (rno-mir-29c), blast E-value=4.2039e-45

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-564, gnl|bosTau2|chr16 (55094047-55093504)
               

               
               1-564, gnl|Hg17|chr1 (204364179-204363591)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr16 (55094047-55093504)
               

               
               1-564, gnl|Hg17|chr1 (204364179-204363591)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	476-563, miR-29c (gnl\|combinedlit\|LIT2927), blast E-value=9.80909e-45
	476-563, MI0000865 (rno-mir-29c), blast E-value=4.2039e-45

	1-564, gnl\|bosTau2\|chr16 (55094047-55093504)
	1-564, gnl\|Hg17\|chr1 (204364179-204363591)