Non-Coding RNA Search

Pig3-SRG8004F17

Sequence:


               
               TGGACCAGTGATGACGGTTGGTGGAGTACGAGTCATGGACGATGACTACTTTGTGTCTGA
AACTCTGAGGTCCAATAAAAAATGAAATAGAGTCTGTTGCCTCTGTTTGAAGACATCCTG
TGGACAGATGTTAGAATCCTTTGTCGAAGGGTCACCTCATTATATTATTTATACTTATGC
TTATAAATGTGTTTACATTAGGAAAATGGACATGTTCATGACAGAGTAAACAAAATGATA
AAAATAAGGACCCATTTAGAGAAAGTCTCAACTGTTTGGCCACCTGCTGTGCTCTGTACC
CCTCAGATTGGATGCCCGCTAGTGGATTTAAGCATCTTCCGTGGTCCCGTGCTCTGCAGA
CCCATGTGAGAAACACAGTAAACAAATTCATGTCTTTGAGGGCTTTTTTTTTTAACTCTC
AGATATTCCACTGTGCGGTTAAAAATGAAATAGAGTTACTGCTGGTAGTTAAGGAATGAA
TCGATGCACGTATGCAGATAAGCATGAAGACCAAGAGGCCCATACGTGGACCAAGGATGA
TGACTGATGGCGCATGCGTCATGGATGATAAATACCACGTGTCTGAAACGCTGAGGTCCG
ATAAAAAGAACTGTAATCTGTCACCTCTACTTGATATGCTATTATAGATGAGTGTTAGGA
AAATAAAAGATCGATTTTCTTGGATTGTGTTTACGAATTTTGAGTGTACTGTTAAAAAAA
AATGGCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACCAGTGATGACGGTTGGTGGAGTACGAGTCATGGACGATGACTACTTTGTGTCTGA
AACTCTGAGGTCCAATAAAAAATGAAATAGAGTCTGTTGCCTCTGTTTGAAGACATCCTG
TGGACAGATGTTAGAATCCTTTGTCGAAGGGTCACCTCATTATATTATTTATACTTATGC
TTATAAATGTGTTTACATTAGGAAAATGGACATGTTCATGACAGAGTAAACAAAATGATA
AAAATAAGGACCCATTTAGAGAAAGTCTCAACTGTTTGGCCACCTGCTGTGCTCTGTACC
CCTCAGATTGGATGCCCGCTAGTGGATTTAAGCATCTTCCGTGGTCCCGTGCTCTGCAGA
CCCATGTGAGAAACACAGTAAACAAATTCATGTCTTTGAGGGCTTTTTTTTTTAACTCTC
AGATATTCCACTGTGCGGTTAAAAATGAAATAGAGTTACTGCTGGTAGTTAAGGAATGAA
TCGATGCACGTATGCAGATAAGCATGAAGACCAAGAGGCCCATACGTGGACCAAGGATGA
TGACTGATGGCGCATGCGTCATGGATGATAAATACCACGTGTCTGAAACGCTGAGGTCCG
ATAAAAAGAACTGTAATCTGTCACCTCTACTTGATATGCTATTATAGATGAGTGTTAGGA
AAATAAAAGATCGATTTTCTTGGATTGTGTTTACGAATTTTGAGTGTACTGTTAAAAAAA
AATGGCCCAAAAA

ncRNA annotation: 2 entry(ies)

Help | Less info


               
               1-75, RF00181;sno_14q_I_II; (AL132709.5/168250-168176), RaveNnA Score=79.34
               

               
               527-601, , RaveNnA Score=64.83

ncRNA annotation: 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               1-75, RF00181;sno_14q_I_II; (AL132709.5/168250-168176), RaveNnA Score=79.34
               

               
               527-601, , RaveNnA Score=64.83

	1-75, RF00181;sno_14q_I_II; (AL132709.5/168250-168176), RaveNnA Score=79.34
	527-601, , RaveNnA Score=64.83