Non-Coding RNA Search

Ss1.1-Ovi2-UMC-peov3-003-f02.3

Sequence:


               
               GGAACATATATGACCAAATCAACACCCGTTGTACACCTCCATTTTACTCGAAGAAACTTG
GTTCTAGCTGCAGGAGCTTATAGTCCACAATAAACCATCGGTATTAAAGACCTTTGGAAG
CTACTGTTTGAAAAAGGGAGACTAAAAGCAAATACCTCAGTGATTAATATTTAAGCTACA
AAGAATGTTTTGTCTATATGGATCTGGAAGTATGCTGCTTGGAAATTCTGAACAGGACCG
TTCCACGTTTCTATAGCAACCACATTTAACTAATTTCCGTTAGTTGAATAAGAGGTATTA
TGTTCGTGGAGGGGACATTTATGGTGCTTGGGATTGCGTGGAAACTATGCATTTTCTGTT
CAAGTGCTATTTTAATTTATTATGTCTAGAAAAGAAATCGACTTCAATAATTCATCCTGC
TTCAAGATTCAAATGGAGTAATATAATACCATCCTAAATTTTAGCTGAAGAATTCTATGA
GCATGTATGTTTCTGCTGTAAATGTAGTTACTGTATGGCACTCAAGAACTATGTTAAATG
ATCTGCTAACATTTTTGCTTGGCTTATGATTAGTGGAATGTATGGTTAGCTGGGTAGGGT
GAACTACGGTTCCTTTCTGAGAAATAGATGAAGTACAACCATCCACTGACATCTGAATTT
ATACCCATTGGATTTTGAGTGCACCCAAACACACTATAAACCAGGTGAAGAAATTAACTT
CCATGTTCTACTTCAGCTAAAATGGCTACATACAACCTAGTACACTTGAAGTCAGACATT
TCAGTTGCTTACCTCCAGTACTGAGCCTTGCTTTGGGAAACTTAAAAGATTTAGACCAAG
TCACTGCCAGTTTTTTGCCTTTGTTGCATTTTGTACAGTTTTTATATTTTTGATATCTTG
TAAATAAAGACAACCAGCTTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACATATATGACCAAATCAACACCCGTTGTACACCTCCATTTTACTCGAAGAAACTTG
GTTCTAGCTGCAGGAGCTTATAGTCCACAATAAACCATCGGTATTAAAGACCTTTGGAAG
CTACTGTTTGAAAAAGGGAGACTAAAAGCAAATACCTCAGTGATTAATATTTAAGCTACA
AAGAATGTTTTGTCTATATGGATCTGGAAGTATGCTGCTTGGAAATTCTGAACAGGACCG
TTCCACGTTTCTATAGCAACCACATTTAACTAATTTCCGTTAGTTGAATAAGAGGTATTA
TGTTCGTGGAGGGGACATTTATGGTGCTTGGGATTGCGTGGAAACTATGCATTTTCTGTT
CAAGTGCTATTTTAATTTATTATGTCTAGAAAAGAAATCGACTTCAATAATTCATCCTGC
TTCAAGATTCAAATGGAGTAATATAATACCATCCTAAATTTTAGCTGAAGAATTCTATGA
GCATGTATGTTTCTGCTGTAAATGTAGTTACTGTATGGCACTCAAGAACTATGTTAAATG
ATCTGCTAACATTTTTGCTTGGCTTATGATTAGTGGAATGTATGGTTAGCTGGGTAGGGT
GAACTACGGTTCCTTTCTGAGAAATAGATGAAGTACAACCATCCACTGACATCTGAATTT
ATACCCATTGGATTTTGAGTGCACCCAAACACACTATAAACCAGGTGAAGAAATTAACTT
CCATGTTCTACTTCAGCTAAAATGGCTACATACAACCTAGTACACTTGAAGTCAGACATT
TCAGTTGCTTACCTCCAGTACTGAGCCTTGCTTTGGGAAACTTAAAAGATTTAGACCAAG
TCACTGCCAGTTTTTTGCCTTTGTTGCATTTTGTACAGTTTTTATATTTTTGATATCTTG
TAAATAAAGACAACCAGCTTTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               236-355, + strand, RNAz p=0.975614

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-355, + strand, RNAz p=0.975614

ncRNA annotation: 1 entry(ies)

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               745-924, AL137373 (gnl|hinv|HIV2842), blast E-value=0

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               745-924, AL137373 (gnl|hinv|HIV2842), blast E-value=0

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006951, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006951, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-924, gnl|bosTau2|chr26 (16029033-16028112)
               

               
               1-924, gnl|Hg17|chr10 (105137878-105138802)
               

               
               1-924, gnl|Mm7|chr19 (46983049-46983966)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr26 (16029033-16028112)
               

               
               1-924, gnl|Hg17|chr10 (105137878-105138802)
               

               
               1-924, gnl|Mm7|chr19 (46983049-46983966)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.415628)
               

               
               mcp (0.170648)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               mcp (0.170648)
               

               
               spc (0.113366)

	1-924, gnl\|bosTau2\|chr26 (16029033-16028112)
	1-924, gnl\|Hg17\|chr10 (105137878-105138802)
	1-924, gnl\|Mm7\|chr19 (46983049-46983966)