Non-Coding RNA Search

Pig2-119B05

Sequence:


               
               AAAAAGATTTTTAGTCTTTCAGAGGGTTTTATAAAAATTTTAATAATGATGATAGTAAAA
ACCGAAATGATGAATATCCCTATAACACTGAAGTTTAAATTTAAGGACTTAACATTCTGT
TAAAAAATATTGAGGCATATTTTCAACCTCACTTCACTTTTTTTTCAAAGAGAAGATGAA
GTCCAAGTACAAAGGCATACTAACAGATTCTACTAAACATCTCTGTTTATTAAAAAGGAA
TCTATTGGAGTTCCCATTGTGACCCAGTGAGTTGAGAACCCAACGTAgcatcctcatgga
taccagtcaggttcttcacctggtgagccgcaaggggaactccCCCATTTGTGTTTTTAT
TTTTTTATTTTCTTTGTTTTTCTTTCTTTTAACCATTAGTTATTTTGTGGCTGCGGTGTG
CAGCAGTTTGATGTGGGTTCTCCATTCCTAGACCAGGGATTAaacccaggccacagtggt
gaaagcaccgaatcctaaccactagaccaccagCGAACTCCCTTGTTTGTTTTTCCATGG
TACTTATCACTACCTGAAACTGACTGATAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGATTTTTAGTCTTTCAGAGGGTTTTATAAAAATTTTAATAATGATGATAGTAAAA
ACCGAAATGATGAATATCCCTATAACACTGAAGTTTAAATTTAAGGACTTAACATTCTGT
TAAAAAATATTGAGGCATATTTTCAACCTCACTTCACTTTTTTTTCAAAGAGAAGATGAA
GTCCAAGTACAAAGGCATACTAACAGATTCTACTAAACATCTCTGTTTATTAAAAAGGAA
TCTATTGGAGTTCCCATTGTGACCCAGTGAGTTGAGAACCCAACGTAgcatcctcatgga
taccagtcaggttcttcacctggtgagccgcaaggggaactccCCCATTTGTGTTTTTAT
TTTTTTATTTTCTTTGTTTTTCTTTCTTTTAACCATTAGTTATTTTGTGGCTGCGGTGTG
CAGCAGTTTGATGTGGGTTCTCCATTCCTAGACCAGGGATTAaacccaggccacagtggt
gaaagcaccgaatcctaaccactagaccaccagCGAACTCCCTTGTTTGTTTTTCCATGG
TACTTATCACTACCTGAAACTGACTGATAAAT

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               516-445, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/121779-121850), RaveNnA 
Score=29.66

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               516-445, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/121779-121850), RaveNnA 
Score=29.66