Non-Coding RNA Search

Ss1.1-4civ-UMC-p4civv1-013-g06.3

Sequence:


               
               CCGGGGTGGAGCAGTTTGGCAGCTTGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAAT
CCTGCCCCCGCAACCAGCCAGAAAAAAAATAAAAAAAGTAAAAAGAAGGGGTGGAGCAGT
CTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAATCCTGCCCCCGCAACC
AGAAAAAAGAAGGGAAAGTCAGAAAGGAGGAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGGTGGAGCAGTTTGGCAGCTTGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAAT
CCTGCCCCCGCAACCAGCCAGAAAAAAAATAAAAAAAGTAAAAAGAAGGGGTGGAGCAGT
CTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAATCCTGCCCCCGCAACC
AGAAAAAAGAAGGGAAAGTCAGAAAGGAGGAAAAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8DCV4_VIBVU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8DCV4_VIBVU

ncRNA annotation: 3 entry(ies)

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               108-176, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=1e-32
               

               
               2-72, RF00005;tRNA; (AE012553.1/241438-241511), RaveNnA Score=53.85
               

               
               108-177, RF00005;tRNA; (AE012553.1/241438-241511), RaveNnA Score=52.46

ncRNA annotation: 3 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               108-176, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=1e-32
               

               
               2-72, RF00005;tRNA; (AE012553.1/241438-241511), RaveNnA Score=53.85
               

               
               108-177, RF00005;tRNA; (AE012553.1/241438-241511), RaveNnA Score=52.46

	108-176, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=1e-32
	2-72, RF00005;tRNA; (AE012553.1/241438-241511), RaveNnA Score=53.85
	108-177, RF00005;tRNA; (AE012553.1/241438-241511), RaveNnA Score=52.46