Non-Coding RNA Search

Ss1.1-LyN1-MLN01A060101.5

Sequence:


               
               GGGGAGCAGCTCGCGGCTCCGGCTCGGCCTTGGGCTGGCTGCAGTCTTAGTGTGAGGGCG
GCTGGAGTGGCTGGCACGTTTATGATGAGGCTTCTGCTACTTTTCCTGGTGGCGGCGTCG
GCGGTGGTCCGGAGCGATGCCTCGGCCAACATGGGAGGCGTGCCTGGCAAGAGATTAAAG
ATGCAGTACGCCACGGGGCCGCTGCTCAAATTCCAGATATGTGTTTCCTGAGGTTATAGG
CGGGTGTTTGAGGAGTACATGCGGGTTATTAGCCAGCGGTACCCAGACATCCGCATTGAA
GGAGAGAATTACCTCCCTCAACCGATATATAGACATATAGCATCTTTCCTGTCAGTCTTC
AAGCTAGTATTAATAGGCTTAATAATCGTTGGCAAAGATCCTTTTGCTTTTTTCGGCATG
CAAGCTCCTAGTATCTGGCAATGGGGCCAAGAAAATAAGGTCTATGCATGTATGATGGTC
TTCTTCTTGAGCAACATGATTGAGAACCAGTGTATGTCAACAGGTGCATTTGAGATAACT
TTGAATGATGTACCTGTGTGGTCTAAGCTGGAATCCGGTCACCTTCCATCCATGCAACAG
CTTGTTCAGATTCTTGACAATGAAATGAAGCTCAATGTGCATATGGATTCAATTCCACAT
CATCGATCATAGCCCCACCTATCAGCACCGAAAACTCTTTTACATTAAGGGATTTTTGCA
AGAGCAGCGGGACTGACGTTATGAAGGCCTGTACTGAAGACAGCAAGCTGTTAGTACAGA
CCAGATGCTTTCTTGGCAGGCTCGTTGTACCTCTTGGAAAACCTCAGTGCAAGACAGTTT
TTCAGTGCTGGCACATTTTGGAATTCTGCACATTCGTGGAGTGCAATAATACTGTATAGC
TTTTTTTCTTCCCCAAATCCATTCAGTTAATTTAAAAAAAAAAAATGCAGACATTACTAT
TTGTACCTTTTTTTTCTTTGTCATATTTGAAAAAGTAGAAAATGAGTTAAAATTTGGTTT
TTTTTCCCAAAGATGTCTGTTAAATCTGTTGTGATTTTATATGAATTTTCCTTTTTTATA
GTTTAAAAGTTGATCTTTTCAGATTGTAGCTGAAGTTCCCAAATACTTTATAAGAGTTTA
TCAGACATCTCTAATTTGGTCATGTCCAGTTTATATAGTTTTCAAAATATTGCAGATTGT
GAACAGTGCATTATATAAGATTATGGGGAGAGATCCTATATCCAGAGTACTCTACCAGTT
TGTGTGTATGTGTGTGTGCGTGTGTGTGATTACCAGAGAACTACTAAAAGACCAACTGCT
TTTTAAATCCTGTTATGTAGTTCAAGTGTCCTGCCTTGACCAATTTAATGAGTTGATTAA
CTGGGCCTTTATACTTAATAAAAAACTAAGCAGATGTAAGTTAAAAAGTTTGAATTTATT
GCCCAACATACCTATTAACATTACATTTAACAGTTGTCAATCTAATTTTTTGTTTTTGAC
TCTCAAATTTCCTAGGGGATGCAGTTTAGAGTCACACGAATAATAGGTCATTTACCATTT
TTAGGATAATTGATACTCCCCTCACCGAAGATAGTTGAATGTCTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGCAGCTCGCGGCTCCGGCTCGGCCTTGGGCTGGCTGCAGTCTTAGTGTGAGGGCG
GCTGGAGTGGCTGGCACGTTTATGATGAGGCTTCTGCTACTTTTCCTGGTGGCGGCGTCG
GCGGTGGTCCGGAGCGATGCCTCGGCCAACATGGGAGGCGTGCCTGGCAAGAGATTAAAG
ATGCAGTACGCCACGGGGCCGCTGCTCAAATTCCAGATATGTGTTTCCTGAGGTTATAGG
CGGGTGTTTGAGGAGTACATGCGGGTTATTAGCCAGCGGTACCCAGACATCCGCATTGAA
GGAGAGAATTACCTCCCTCAACCGATATATAGACATATAGCATCTTTCCTGTCAGTCTTC
AAGCTAGTATTAATAGGCTTAATAATCGTTGGCAAAGATCCTTTTGCTTTTTTCGGCATG
CAAGCTCCTAGTATCTGGCAATGGGGCCAAGAAAATAAGGTCTATGCATGTATGATGGTC
TTCTTCTTGAGCAACATGATTGAGAACCAGTGTATGTCAACAGGTGCATTTGAGATAACT
TTGAATGATGTACCTGTGTGGTCTAAGCTGGAATCCGGTCACCTTCCATCCATGCAACAG
CTTGTTCAGATTCTTGACAATGAAATGAAGCTCAATGTGCATATGGATTCAATTCCACAT
CATCGATCATAGCCCCACCTATCAGCACCGAAAACTCTTTTACATTAAGGGATTTTTGCA
AGAGCAGCGGGACTGACGTTATGAAGGCCTGTACTGAAGACAGCAAGCTGTTAGTACAGA
CCAGATGCTTTCTTGGCAGGCTCGTTGTACCTCTTGGAAAACCTCAGTGCAAGACAGTTT
TTCAGTGCTGGCACATTTTGGAATTCTGCACATTCGTGGAGTGCAATAATACTGTATAGC
TTTTTTTCTTCCCCAAATCCATTCAGTTAATTTAAAAAAAAAAAATGCAGACATTACTAT
TTGTACCTTTTTTTTCTTTGTCATATTTGAAAAAGTAGAAAATGAGTTAAAATTTGGTTT
TTTTTCCCAAAGATGTCTGTTAAATCTGTTGTGATTTTATATGAATTTTCCTTTTTTATA
GTTTAAAAGTTGATCTTTTCAGATTGTAGCTGAAGTTCCCAAATACTTTATAAGAGTTTA
TCAGACATCTCTAATTTGGTCATGTCCAGTTTATATAGTTTTCAAAATATTGCAGATTGT
GAACAGTGCATTATATAAGATTATGGGGAGAGATCCTATATCCAGAGTACTCTACCAGTT
TGTGTGTATGTGTGTGTGCGTGTGTGTGATTACCAGAGAACTACTAAAAGACCAACTGCT
TTTTAAATCCTGTTATGTAGTTCAAGTGTCCTGCCTTGACCAATTTAATGAGTTGATTAA
CTGGGCCTTTATACTTAATAAAAAACTAAGCAGATGTAAGTTAAAAAGTTTGAATTTATT
GCCCAACATACCTATTAACATTACATTTAACAGTTGTCAATCTAATTTTTTGTTTTTGAC
TCTCAAATTTCCTAGGGGATGCAGTTTAGAGTCACACGAATAATAGGTCATTTACCATTT
TTAGGATAATTGATACTCCCCTCACCGAAGATAGTTGAATGTCTTTAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6470251|gb|AAF13696.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6470251|gb|AAF13696.1|

ncRNA annotation: 2 entry(ies)

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               733-799, RF00031;SECIS; (BC043068.1/613-678), blast E-value=2e-23
               

               
               733-799, , RaveNnA Score=28.74

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               733-799, RF00031;SECIS; (BC043068.1/613-678), blast E-value=2e-23
               

               
               733-799, , RaveNnA Score=28.74

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-221, gnl|bosTau2|chr1 (74764546-74764326)
               

               
               1-221, gnl|Hg17|chr3 (151803772-151803984)
               

               
               1-221, gnl|Mm7|chr3 (58705435-58705645)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr1 (74764546-74764326)
               

               
               1-221, gnl|Hg17|chr3 (151803772-151803984)
               

               
               1-221, gnl|Mm7|chr3 (58705435-58705645)

Expressed library(ies): 50 entry(ies)

More info

Expressed library(ies): 50 entry(ies)

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               mgp (1.1534)
               

               
               liv (0.877706)
               

               
               bfe (0.599431)
               

               
               ski (0.586941)
               

               
               cbl (0.573987)
               

               
               mgm (0.541028)
               

               
               cty (0.5204)
               

               
               kid (0.518941)
               

               
               pro (0.512033)
               

               
               lin (0.436808)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 50 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (1.1534)
               

               
               liv (0.877706)
               

               
               bfe (0.599431)
               

               
               ski (0.586941)
               

               
               cbl (0.573987)
               

               
               mgm (0.541028)
               

               
               cty (0.5204)
               

               
               kid (0.518941)
               

               
               pro (0.512033)
               

               
               lin (0.436808)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	733-799, RF00031;SECIS; (BC043068.1/613-678), blast E-value=2e-23
	733-799, , RaveNnA Score=28.74

	1-221, gnl\|bosTau2\|chr1 (74764546-74764326)
	1-221, gnl\|Hg17\|chr3 (151803772-151803984)
	1-221, gnl\|Mm7\|chr3 (58705435-58705645)

	mgp (1.1534)
	liv (0.877706)
	bfe (0.599431)
	ski (0.586941)
	cbl (0.573987)
	mgm (0.541028)
	cty (0.5204)
	kid (0.518941)
	pro (0.512033)
	lin (0.436808)
	ova (0.387397)
	sug (0.381874)
	tra (0.369276)
	nep (0.36785)
	cte (0.29274)
	cst (0.280073)
	fce (0.271592)
	ret (0.257467)
	pan (0.23596)
	ece (0.229305)
	spc (0.226732)
	nms (0.213858)
	col (0.195008)
	sag (0.182715)
	sto (0.179824)
	ton (0.1755)
	sin (0.174948)
	fhi (0.169578)
	nje (0.16592)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	eli (0.151814)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	pty (0.142714)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	thg (0.126791)
	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)