Non-Coding RNA Search

Pig1-58H11

Sequence:


               
               GGGGACAGTTAAGTTGGAGCCGCTGGGGCGGAGGCCGCCACTGAGCGGTCCGCTCGGGGC
CGAGCACAGTTCTGGAGGATGAGAGCCCGCCTGGCCCAAGGACGATGCACTCTGTCCTGT
TCCGAGCGCAAGGAACAGACCAAAAAAAGTCTACGGGAATATAACTCTGCCAGTTAGACA
CCTGTCTGAAAGTTCAAAGGCTTTGAATGCTGCAAAAATCATTCTTTTGAAAAATCTCAA
ACCTAGTGAGTCTCGCAAGTCCGATACAACCTGCGTCGGTGGTCGATGGCGTGTGAGTAG
GGCTGGGTGCTTTCCAAGGCGGCTCCGTGCTGTGAGCCCGGGCGGTGAACTCTCTCTTGT
GTTTGCAGTCCAGGTCTCTGTGTCTTCTCGGCCGCAGCGGGATGGGGCCGCGCCAGCTCC
CAGCGGAGGCACTGCTTCTCCGGGCTGTCGATTGGACCCGCCCTCCGGTGCCTACTGAGC
TGATATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGACAGTTAAGTTGGAGCCGCTGGGGCGGAGGCCGCCACTGAGCGGTCCGCTCGGGGC
CGAGCACAGTTCTGGAGGATGAGAGCCCGCCTGGCCCAAGGACGATGCACTCTGTCCTGT
TCCGAGCGCAAGGAACAGACCAAAAAAAGTCTACGGGAATATAACTCTGCCAGTTAGACA
CCTGTCTGAAAGTTCAAAGGCTTTGAATGCTGCAAAAATCATTCTTTTGAAAAATCTCAA
ACCTAGTGAGTCTCGCAAGTCCGATACAACCTGCGTCGGTGGTCGATGGCGTGTGAGTAG
GGCTGGGTGCTTTCCAAGGCGGCTCCGTGCTGTGAGCCCGGGCGGTGAACTCTCTCTTGT
GTTTGCAGTCCAGGTCTCTGTGTCTTCTCGGCCGCAGCGGGATGGGGCCGCGCCAGCTCC
CAGCGGAGGCACTGCTTCTCCGGGCTGTCGATTGGACCCGCCCTCCGGTGCCTACTGAGC
TGATATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGCCCTC

ncRNA annotation: 4 entry(ies)

Help | Less info


               
               463-530, RF00178;mir-24; (AF043896.1/53-120), blast E-value=1e-31
               

               
               463-530, miR-24 (gnl|combinedlit|LIT3258), blast E-value=1e-32
               

               
               463-530, MI0002640 (ppa-mir-24-1), blast E-value=3e-33
               

               
               463-530, RF00178;mir-24; (AF043896.1/53-120) : miR-24 (gnl|combinedlit|LIT3258) 
: MI0002640 (ppa-mir-24-1), RaveNnA Score=16.36

ncRNA annotation: 4 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               463-530, RF00178;mir-24; (AF043896.1/53-120), blast E-value=1e-31
               

               
               463-530, miR-24 (gnl|combinedlit|LIT3258), blast E-value=1e-32
               

               
               463-530, MI0002640 (ppa-mir-24-1), blast E-value=3e-33
               

               
               463-530, RF00178;mir-24; (AF043896.1/53-120) : miR-24 (gnl|combinedlit|LIT3258) 
: MI0002640 (ppa-mir-24-1), RaveNnA Score=16.36

	463-530, RF00178;mir-24; (AF043896.1/53-120), blast E-value=1e-31
	463-530, miR-24 (gnl\|combinedlit\|LIT3258), blast E-value=1e-32
	463-530, MI0002640 (ppa-mir-24-1), blast E-value=3e-33
	463-530, RF00178;mir-24; (AF043896.1/53-120) : miR-24 (gnl\|combinedlit\|LIT3258) : MI0002640 (ppa-mir-24-1), RaveNnA Score=16.36