Non-Coding RNA Search

Ss1.1-Spl1-SPL01E120093.5

Sequence:


               
               TCATTCGAAAGTCTATGAGTTTCCTAATCCCCTCTGCCTTCCATTCTCCAGAGTAATGTT
CTGTCATTGAAGGCATGCCCTTCAGTGCCCTATTGCAGGCCCCCTGCCACTGTCATTCCT
TTTCATACCAATTCTCGGATGCAAAGCAATCTTGGGTAGTCCAAACATTTCTTAGATCCA
AGTAACGTTTCCATTGCTTACTCCATTCAGACTCTTCCATCTGCCTCCACCCTCTCAGTC
ACACCCCTAGAAGCAAACCAGGAAGTCTGTCCAACCAGAAGCACTCTTTGAAAGCCCAAA
CACTTTCTTGTTCTCCTGTTCTCAAGCCATGGTGTATTTCATCTGACTTTACACCACCCC
TAGCCCTCTGGCTTTCATGGTTCTGCACCACTTGACAGAGCAGGCAGGCAAGCAGAGGCT
GGGGCAGCAGGTGGAAGGAAGTACAGGCAGGATGTCTCTAGAAACAGAAGAGAGGCAGCT
GCTGGCACAGAAACCTGCAATAGTCCCATGGCCATCATGACCCACACGAGGGTCCTAGCC
TGCTAAACAGGCTCTCCCTACCCCCATTCCCCGGGTTCCCTGGGGGCGCCCCTCCCTTTG
GCTTTGAGCCTCATTGCGGTTCACGCCTTCCCCCATCCCAGGAGGCACTGAACTCTGACT
CCTTTTCAGGCTATGGAAGAACGAAGTCCTTACCTGTTGGAATCTGGTCCACCCTGAGAA
TGCTGACACTAATGCAGCTGAACACTAGAAGTTCTGAGGGAGTTCCCTGGTGGTCTAGTG
GGTAGGACTCTGCCCTTTCACCATGGCAGCCCAGGTTCAATCCCTGGTCTGGGAACTGAG
ATTCCCACATCAAGCTGCTGCATGCCACAGCCAAGAAAAAAATGAAAATTAAAAGCTAAA
AAAAAAATAAAAATTTTTCTCACTGCCAGAGTAAAGAAAACTGCTCTAGCAGGCTGCAGC
AGATACTCTGCCTCTGGGGCTCTTGGTCAGAAAACAGGCCCGGATGCTCCCAAAGGACTG
AGGGTGGACCAGATGATCTCTCAAGATTGCTCCCGTCGTGGTGCAGTGGTCAACGAATCC
GACTAGGAACCATGAGGTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTGGGTTAACGATCT
GGCGTTGCTGTGAGCTGTGGTGTAGGTTGCAGACGTGGCTCGGATCCCACGTTGCTGTGG
CTCTGGCATAGGCCGGCTCTGATTCAACCCCTAGGCCTGGGAACCTCCATATGCCGCAGG
AGCGGCCCTAGAAATGGCAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTCGAAAGTCTATGAGTTTCCTAATCCCCTCTGCCTTCCATTCTCCAGAGTAATGTT
CTGTCATTGAAGGCATGCCCTTCAGTGCCCTATTGCAGGCCCCCTGCCACTGTCATTCCT
TTTCATACCAATTCTCGGATGCAAAGCAATCTTGGGTAGTCCAAACATTTCTTAGATCCA
AGTAACGTTTCCATTGCTTACTCCATTCAGACTCTTCCATCTGCCTCCACCCTCTCAGTC
ACACCCCTAGAAGCAAACCAGGAAGTCTGTCCAACCAGAAGCACTCTTTGAAAGCCCAAA
CACTTTCTTGTTCTCCTGTTCTCAAGCCATGGTGTATTTCATCTGACTTTACACCACCCC
TAGCCCTCTGGCTTTCATGGTTCTGCACCACTTGACAGAGCAGGCAGGCAAGCAGAGGCT
GGGGCAGCAGGTGGAAGGAAGTACAGGCAGGATGTCTCTAGAAACAGAAGAGAGGCAGCT
GCTGGCACAGAAACCTGCAATAGTCCCATGGCCATCATGACCCACACGAGGGTCCTAGCC
TGCTAAACAGGCTCTCCCTACCCCCATTCCCCGGGTTCCCTGGGGGCGCCCCTCCCTTTG
GCTTTGAGCCTCATTGCGGTTCACGCCTTCCCCCATCCCAGGAGGCACTGAACTCTGACT
CCTTTTCAGGCTATGGAAGAACGAAGTCCTTACCTGTTGGAATCTGGTCCACCCTGAGAA
TGCTGACACTAATGCAGCTGAACACTAGAAGTTCTGAGGGAGTTCCCTGGTGGTCTAGTG
GGTAGGACTCTGCCCTTTCACCATGGCAGCCCAGGTTCAATCCCTGGTCTGGGAACTGAG
ATTCCCACATCAAGCTGCTGCATGCCACAGCCAAGAAAAAAATGAAAATTAAAAGCTAAA
AAAAAAATAAAAATTTTTCTCACTGCCAGAGTAAAGAAAACTGCTCTAGCAGGCTGCAGC
AGATACTCTGCCTCTGGGGCTCTTGGTCAGAAAACAGGCCCGGATGCTCCCAAAGGACTG
AGGGTGGACCAGATGATCTCTCAAGATTGCTCCCGTCGTGGTGCAGTGGTCAACGAATCC
GACTAGGAACCATGAGGTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTGGGTTAACGATCT
GGCGTTGCTGTGAGCTGTGGTGTAGGTTGCAGACGTGGCTCGGATCCCACGTTGCTGTGG
CTCTGGCATAGGCCGGCTCTGATTCAACCCCTAGGCCTGGGAACCTCCATATGCCGCAGG
AGCGGCCCTAGAAATGGCAAAAAG

ncRNA annotation: 1 entry(ies)

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               764-835, tRNA Pseudo, RaveNnA Score=32.91

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               764-835, tRNA Pseudo, RaveNnA Score=32.91

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ecc (0.345105)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               hyp (0.142837)