Non-Coding RNA Search

Ss1.1-rsin08_p7.5

Sequence:


               
               GGGGGGCACTCCTTTGACATGTGGAAGTTCCCAGGCCAGAGATCTAACCTGAGCCACAGC
AGTGACAACGCTGGATCCTTAACCCACTGTACCACCAGGGAACTCCTCTAAGTCTTTAAA
AAAATGTTTTTAGTCTCTTGCCAACATACATATCCATGCATGTACTTCACCGATTTGCAT
AGCAGAGTAGGAAGAATATGAATGTGTATAACAGGGGTCAACTTTATTTTGGACTTTCTG
GAACAGATCACCTTTTTATCCTCCCCATGATGGCTCCCTGAATTGCTTCCAGTTACTGAA
ATTTCGTAATTGCCCACAACTCCATATGTGTCCGTCTAAGGATCTTGCCATGTCCACCAA
ACCCAGCCAAAAGCTGGTCATCAGTGCTAATGATTTACAAAGCTGAGCTTCAGAATTAAG
AGCCCCCTGCAAATAGGGTTCTGTTCCTCCATTGCCACACTTTTCAAGGAGAAATTAGGT
GCTTGTTTTGTTTTTGTTTTTTTTTTTCAGTTCCCCAGATCATCCTGGGCTCATTTGCAA
ATAAGATGTTCGGCAAGAACTATTACTCCTGAAACTTTTTTTGCTCTTTGTGGCCTATGC
TTCCATAGAATCTGAGATATTCCAGGTGCATTAAAGACTTACCTACAGAAAATTTTAGGG
GACTCGATCAAAAGAACGCTTCTCTAGGAATAAAGGTCTTTTTAGGTTTTAGTCCTCCCT
TCAAGGTTCTTAACTGGATATGCCACATATTTTATTTCCTTTCTGTATGTACATTGATTT
ACTACTTGGGTTTACTGTTTTCTATTTGGAAACAGCTTTTACAAACGAACGCATCTCTTT
ACAAATGTGAATTCCAGCTGGCTCCATTCTCACCTTGACTCTCGTTTCTGCTTATTGCTA
GACCCCAGCTTCTCTTTCTGCTTCTCTCCTAGGATTTTATCTTGCTCAGCAATTCTTGTG
TGTGATTCTGAATTCTATGGTTTGCGTTTCCTGACCAACCTCTCCTTGCCTCTGAGTCCA
TTTCCTGTACTTTAAGCTTTGGCATTCCATTCTCCGATCCGGGTCAAAACTGAAACTTCA
AGTGCTAATAAGACTGGTCCTTGCCACACCATTGATTCTTTTTCCTCTCCGTTTCTTGTT
TCTCACTCCACTGTTCTTTCTCAAAGATGCACCCTGATGTGTCGTTAGGGTGTCATTAGG
ATATGGCAGCTAGACTTGTGGCGAGCATGTCACAGTGGACACAAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGGCACTCCTTTGACATGTGGAAGTTCCCAGGCCAGAGATCTAACCTGAGCCACAGC
AGTGACAACGCTGGATCCTTAACCCACTGTACCACCAGGGAACTCCTCTAAGTCTTTAAA
AAAATGTTTTTAGTCTCTTGCCAACATACATATCCATGCATGTACTTCACCGATTTGCAT
AGCAGAGTAGGAAGAATATGAATGTGTATAACAGGGGTCAACTTTATTTTGGACTTTCTG
GAACAGATCACCTTTTTATCCTCCCCATGATGGCTCCCTGAATTGCTTCCAGTTACTGAA
ATTTCGTAATTGCCCACAACTCCATATGTGTCCGTCTAAGGATCTTGCCATGTCCACCAA
ACCCAGCCAAAAGCTGGTCATCAGTGCTAATGATTTACAAAGCTGAGCTTCAGAATTAAG
AGCCCCCTGCAAATAGGGTTCTGTTCCTCCATTGCCACACTTTTCAAGGAGAAATTAGGT
GCTTGTTTTGTTTTTGTTTTTTTTTTTCAGTTCCCCAGATCATCCTGGGCTCATTTGCAA
ATAAGATGTTCGGCAAGAACTATTACTCCTGAAACTTTTTTTGCTCTTTGTGGCCTATGC
TTCCATAGAATCTGAGATATTCCAGGTGCATTAAAGACTTACCTACAGAAAATTTTAGGG
GACTCGATCAAAAGAACGCTTCTCTAGGAATAAAGGTCTTTTTAGGTTTTAGTCCTCCCT
TCAAGGTTCTTAACTGGATATGCCACATATTTTATTTCCTTTCTGTATGTACATTGATTT
ACTACTTGGGTTTACTGTTTTCTATTTGGAAACAGCTTTTACAAACGAACGCATCTCTTT
ACAAATGTGAATTCCAGCTGGCTCCATTCTCACCTTGACTCTCGTTTCTGCTTATTGCTA
GACCCCAGCTTCTCTTTCTGCTTCTCTCCTAGGATTTTATCTTGCTCAGCAATTCTTGTG
TGTGATTCTGAATTCTATGGTTTGCGTTTCCTGACCAACCTCTCCTTGCCTCTGAGTCCA
TTTCCTGTACTTTAAGCTTTGGCATTCCATTCTCCGATCCGGGTCAAAACTGAAACTTCA
AGTGCTAATAAGACTGGTCCTTGCCACACCATTGATTCTTTTTCCTCTCCGTTTCTTGTT
TCTCACTCCACTGTTCTTTCTCAAAGATGCACCCTGATGTGTCGTTAGGGTGTCATTAGG
ATATGGCAGCTAGACTTGTGGCGAGCATGTCACAGTGGACACAAATAT

ncRNA annotation: 1 entry(ies)

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               101-28, , RaveNnA Score=30.78

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               101-28, , RaveNnA Score=30.78

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               sin (0.174948)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)