Non-Coding RNA Search

Ss1.1-Mixn-0034a02.5

Sequence:


               
               CATCTTTTCTGGAGCCTGAGGATGATTGGAGGTAAATCTGTTTATCTATGGCTGCTATGT
AAAGTTTGCCAGTTTTTGTGTGACACTTTGGATAGTTGTGCAGGTATTACTTAATCCAAA
GTCTGCCTTTGGCCATTTGTGAACCACCTGAAACAGATTTCTGCTCACATGATGAGTTTG
ATACCGCCCCAGTCTGATCACTATGACTGAAAGGTATTTTCTGAGCTGTGAGTTTGCCTT
AGAGTGGGAAGTTAGTCTTTTTATAAAATGTCTGTTGAGACCTACACAGCCTATTAGGGT
GTCCCATTCCTCTGGGAATGGTTGACTTAGTTCCCAATCTCTGTTTTGCAGGTGAAAGGT
GTAAGCCATACTCTGCTCAACTCCAGTCTGAAACTAAGGTTTAAAGAAAGAACACGTACT
AGGATGGAGTTAAAATTTCCCTATGAAGAAACATTCACACGTCTTACCTCCTGTCCTAGT
CCCAGAGCCTGTAAAGGTGAACCCACTGGGGCTGGCTGGGGGAAAAGAGGAAGGCTTGTT
CCAGAAGGAACTGTCTGAGGGAATCTTAAGAATTTCTAAATTTGGGGAAGGGATAAATTA
TTCACTGAAAATGAGTTTTTTTGTTTGTTTCCAGGTTTAAAGAAAGAACACGTACTTAAC
ACACGGGTAAGTAAGTATCCATTCACGTACTTGTGTTAAATATCAGACTAACTATATAAA
TACAATGTTCTAAGTCCGTTTTAGTAAGAACCCTAAACTGTTCTTTTTCTCTGCAGGAAT
CCAACTCTTGGAGGACATCAGAAGTGGAATTTTCTTATACAACCTACCTATTCAAATTAG
CATATAATCTTTCTAGCCTTTCTAAATAAATAAAGGGATTTTTTTGTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTTTTCTGGAGCCTGAGGATGATTGGAGGTAAATCTGTTTATCTATGGCTGCTATGT
AAAGTTTGCCAGTTTTTGTGTGACACTTTGGATAGTTGTGCAGGTATTACTTAATCCAAA
GTCTGCCTTTGGCCATTTGTGAACCACCTGAAACAGATTTCTGCTCACATGATGAGTTTG
ATACCGCCCCAGTCTGATCACTATGACTGAAAGGTATTTTCTGAGCTGTGAGTTTGCCTT
AGAGTGGGAAGTTAGTCTTTTTATAAAATGTCTGTTGAGACCTACACAGCCTATTAGGGT
GTCCCATTCCTCTGGGAATGGTTGACTTAGTTCCCAATCTCTGTTTTGCAGGTGAAAGGT
GTAAGCCATACTCTGCTCAACTCCAGTCTGAAACTAAGGTTTAAAGAAAGAACACGTACT
AGGATGGAGTTAAAATTTCCCTATGAAGAAACATTCACACGTCTTACCTCCTGTCCTAGT
CCCAGAGCCTGTAAAGGTGAACCCACTGGGGCTGGCTGGGGGAAAAGAGGAAGGCTTGTT
CCAGAAGGAACTGTCTGAGGGAATCTTAAGAATTTCTAAATTTGGGGAAGGGATAAATTA
TTCACTGAAAATGAGTTTTTTTGTTTGTTTCCAGGTTTAAAGAAAGAACACGTACTTAAC
ACACGGGTAAGTAAGTATCCATTCACGTACTTGTGTTAAATATCAGACTAACTATATAAA
TACAATGTTCTAAGTCCGTTTTAGTAAGAACCCTAAACTGTTCTTTTTCTCTGCAGGAAT
CCAACTCTTGGAGGACATCAGAAGTGGAATTTTCTTATACAACCTACCTATTCAAATTAG
CATATAATCTTTCTAGCCTTTCTAAATAAATAAAGGGATTTTTTTGTAAAAAAAAAAAAA

ncRNA annotation: 2 entry(ies)

Help | Less info


               
               164-230, RF00089;U31; (L36588.1/438-508) : U31 (gnl|combinedlit|LIT1408), 
RaveNnA Score=19.81 
               

               
               438-563, RF00099;U22; (U40654.1/2537-2662) : U22 (gnl|combinedlit|LIT1390), 
RaveNnA Score=35.11

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               164-230, RF00089;U31; (L36588.1/438-508) : U31 (gnl|combinedlit|LIT1408), 
RaveNnA Score=19.81 
               

               
               438-563, RF00099;U22; (U40654.1/2537-2662) : U22 (gnl|combinedlit|LIT1390), 
RaveNnA Score=35.11

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               nmm (0.265604)
               

               
               cbe (0.239234)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               cbe (0.239234)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

	164-230, RF00089;U31; (L36588.1/438-508) : U31 (gnl\|combinedlit\|LIT1408), RaveNnA Score=19.81
	438-563, RF00099;U22; (U40654.1/2537-2662) : U22 (gnl\|combinedlit\|LIT1390), RaveNnA Score=35.11

	nmm (0.265604)
	cbe (0.239234)
	csk (0.140746)
	thg (0.126791)
	eje (0.0988338)