Non-Coding RNA Search

Ova2-C0003265_N22

Sequence:


               
               CACACACACCCTGTCTATTGTCTTGACGAAAACTCTGGCTGATAGTTGACAGGAAGTGTT
GGTCTCTGACAGTGTGCTAGGTCCATTTCACAGCCTGAGCACTCTAATCCTCAAAGCCAC
AGGAGATAGAGATCCGGAACTCTCTCTTCGGAGGCTCAAGATGCTCATTAGACAAACTTA
GCAGCACCTGGTGTGGCGCCCTACAAATTGCATGGCCCCTGCACCTCAGCAGAGCCCCTT
TCTGAGGAGAACATCTTGCCCAGGGGCTGGGAATGGAGCTGAGTTGGTAGAATGTTCGAC
TAGCATTTAAGAAGTCCCGGTGCgggctggggatttagctcagtggtagagcgcttgcct
agcaaatgcaaggccctgggttcggtccccagctc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACACACCCTGTCTATTGTCTTGACGAAAACTCTGGCTGATAGTTGACAGGAAGTGTT
GGTCTCTGACAGTGTGCTAGGTCCATTTCACAGCCTGAGCACTCTAATCCTCAAAGCCAC
AGGAGATAGAGATCCGGAACTCTCTCTTCGGAGGCTCAAGATGCTCATTAGACAAACTTA
GCAGCACCTGGTGTGGCGCCCTACAAATTGCATGGCCCCTGCACCTCAGCAGAGCCCCTT
TCTGAGGAGAACATCTTGCCCAGGGGCTGGGAATGGAGCTGAGTTGGTAGAATGTTCGAC
TAGCATTTAAGAAGTCCCGGTGCgggctggggatttagctcagtggtagagcgcttgcct
agcaaatgcaaggccctgggttcggtccccagctc

ncRNA annotation: 2 entry(ies)

Help | Less info


               
               328-392, RF00005;tRNA; (AC120237.5/38384-38457), blast E-value=1e-27
               

               
               328-395, T3 (gnl|combinedlit|LIT2178), blast E-value=4e-28

ncRNA annotation: 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               328-392, RF00005;tRNA; (AC120237.5/38384-38457), blast E-value=1e-27
               

               
               328-395, T3 (gnl|combinedlit|LIT2178), blast E-value=4e-28

	328-392, RF00005;tRNA; (AC120237.5/38384-38457), blast E-value=1e-27
	328-395, T3 (gnl\|combinedlit\|LIT2178), blast E-value=4e-28