Non-Coding RNA Search

Ss1.1-Emb1-C0005217_H12.5

Sequence:


               
               GGGAAGGGGATTAAGAGGAAGAAAATGTTCTGAGTAAAATAAGCTGTAGCAATAATTTGT
ACAACAGGGGGAATACAGCCAGCATTTTATAATAACTCTAAGTGGAGTATAACCTTTAAA
AATTGTGAATCACTATCCTGAGCTCCTACAACTTATATAATGTCATACATCAGCTATACA
TCGCTTAAAACAAACTTTAAACTCTTCTCATCATAAAAATTAAAAAAAGGCTGAAGAACT
TTTGCAGGAAAAAAAAAGTCAGGGTCAGGGTCCTTTTGCAGAAGCAAATGCAGAACTGTT
CTGGCTAGGGAATACCTTCTTTTCTTTTGTATTTTTGGATGACTTTAACCTCTAGTGTTG
GCCCAGCATAAAAATAAATTTTAGTGATGGTTCCCAGGGTGAGTAAATGTCAAATGTGCT
TGACAGAGACTGGAGCCAGTACTTAATCTGCATTTATAGAAACTGTCCCCTTTTTAAAGT
GATTGCAAATAAAAAGACAGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAGGGGATTAAGAGGAAGAAAATGTTCTGAGTAAAATAAGCTGTAGCAATAATTTGT
ACAACAGGGGGAATACAGCCAGCATTTTATAATAACTCTAAGTGGAGTATAACCTTTAAA
AATTGTGAATCACTATCCTGAGCTCCTACAACTTATATAATGTCATACATCAGCTATACA
TCGCTTAAAACAAACTTTAAACTCTTCTCATCATAAAAATTAAAAAAAGGCTGAAGAACT
TTTGCAGGAAAAAAAAAGTCAGGGTCAGGGTCCTTTTGCAGAAGCAAATGCAGAACTGTT
CTGGCTAGGGAATACCTTCTTTTCTTTTGTATTTTTGGATGACTTTAACCTCTAGTGTTG
GCCCAGCATAAAAATAAATTTTAGTGATGGTTCCCAGGGTGAGTAAATGTCAAATGTGCT
TGACAGAGACTGGAGCCAGTACTTAATCTGCATTTATAGAAACTGTCCCCTTTTTAAAGT
GATTGCAAATAAAAAGACAGCCCA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               224-156, , RaveNnA Score=14.41

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               224-156, , RaveNnA Score=14.41