Non-Coding RNA Search

rnep33c_i11.y1

Sequence:


               
               CGACCCCTCCGCCCGCCCGGCGGTCCCTCCAGGCGCAGGGCAGCCACTGCCCACCGCACA
CTGCGCTGCTCCGGACCCACTGTGCGTGTGACAGCGGCTGATCTGTCCCTGGGCAGCGCG
ACCGCCCGGGTCCCTCTGTGACTCTGCTCTGTCGGGCAGGGGACAGCCACATCGGGTCGG
AGGGCGCGCGCCGAGGCGGTGGGAGGCGAGGGCGCCCCTGTGGATCGGGTGTGCCTGTCT
GCTCCCAGCAGTTGGGTGGGTGGGTGGAAACGGGAGACTTTTAGGGGCCTTCGCTGCCCT
CCGCAGGAGAGGGCTCGGGTTGGACCAGATGTCCCCTTGGAGGGAACCCTCTTTTCCCTG
TGTCTCAGGGTGCCAGGATGTGCAGAGTTCCTGGGACCGCCTTCTGGATGTCGCCATGCT
GAAGGCAGCCCTGGGCAGGCATCGGTGTTGTGGTGGGACCGTGGACATCAAGACCGGAAC
CTCCAGAACCAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACCCCTCCGCCCGCCCGGCGGTCCCTCCAGGCGCAGGGCAGCCACTGCCCACCGCACA
CTGCGCTGCTCCGGACCCACTGTGCGTGTGACAGCGGCTGATCTGTCCCTGGGCAGCGCG
ACCGCCCGGGTCCCTCTGTGACTCTGCTCTGTCGGGCAGGGGACAGCCACATCGGGTCGG
AGGGCGCGCGCCGAGGCGGTGGGAGGCGAGGGCGCCCCTGTGGATCGGGTGTGCCTGTCT
GCTCCCAGCAGTTGGGTGGGTGGGTGGAAACGGGAGACTTTTAGGGGCCTTCGCTGCCCT
CCGCAGGAGAGGGCTCGGGTTGGACCAGATGTCCCCTTGGAGGGAACCCTCTTTTCCCTG
TGTCTCAGGGTGCCAGGATGTGCAGAGTTCCTGGGACCGCCTTCTGGATGTCGCCATGCT
GAAGGCAGCCCTGGGCAGGCATCGGTGTTGTGGTGGGACCGTGGACATCAAGACCGGAAC
CTCCAGAACCAGCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-149, - strand, RNAz p=0.919574
               

               
               378-495, - strand, RNAz p=0.99799

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-149, - strand, RNAz p=0.919574
               

               
               378-495, - strand, RNAz p=0.99799

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               28-135, + strand, RNAmicro p=0.999752
               

               
               21-151, - strand, RNAmicro p=0.992252

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               28-135, + strand, RNAmicro p=0.999752
               

               
               21-151, - strand, RNAmicro p=0.992252

ncRNA annotation: 2 entry(ies)

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               121-23, miR-210 (gnl|combinedlit|LIT2780), blast E-value=4.06377e-44
               

               
               121-23, MI0000695 (mmu-mir-210), blast E-value=9.80909e-45

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               121-23, miR-210 (gnl|combinedlit|LIT2780), blast E-value=4.06377e-44
               

               
               121-23, MI0000695 (mmu-mir-210), blast E-value=9.80909e-45

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-495, gnl|bosTau2|chr29 (45757838-45757348)
               

               
               1-495, gnl|Hg17|chr11 (558216-557763)
               

               
               1-495, gnl|Mm7|chr7 (137638778-137638286)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-495, gnl|bosTau2|chr29 (45757838-45757348)
               

               
               1-495, gnl|Hg17|chr11 (558216-557763)
               

               
               1-495, gnl|Mm7|chr7 (137638778-137638286)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-149, - strand, RNAz p=0.919574
	378-495, - strand, RNAz p=0.99799

	28-135, + strand, RNAmicro p=0.999752
	21-151, - strand, RNAmicro p=0.992252

	121-23, miR-210 (gnl\|combinedlit\|LIT2780), blast E-value=4.06377e-44
	121-23, MI0000695 (mmu-mir-210), blast E-value=9.80909e-45

	1-495, gnl\|bosTau2\|chr29 (45757838-45757348)
	1-495, gnl\|Hg17\|chr11 (558216-557763)
	1-495, gnl\|Mm7\|chr7 (137638778-137638286)