Non-Coding RNA Search

Ss1.1-rnco1935b_c17.5

Sequence:


               
               GTTCAGTCTCCCAGTTATGTCTGGACGAGGAAAGCAAGGGGGTAAAGCTCGCGCCAAGGC
CAAAACCCGGTCCTCACGGGCTGGCCTTCAGTTTCCGGTGGGCCGAGTGCACCGCCTGCT
TCGTAAAGGCAACTATGCTGAACGGGTCGGCGCAGGTGCTCCGGTGTACCTGGCGGCGGT
GCTGGAGTATCTGACCGCAGAAATCCTAGAGCTGGCGGGCAACGCAGCTCGTGACAACAA
GAAGACACGCATCATCCCGCGTCACCTACAGCTGGCCATCCGCAACGACGAGGAACTCAA
CAAGCTGCTGGGCAAAGTTACCATCGCTCAGGGCGGTGTCCTGCCCAACATCCAGGCCGT
GCTGTTGCCCAAGAAGACCGAGAGCCACCACAAAGCCAAATAAGTACTCGGCATAAAAAC
AACAAAACAAAAGGCTCTTTTCAGAGCCACTTCTATCATCATAAAAAGGTGACACTTGCA
TTTCCAATTAGCTTACCTCTTGTATTTAGCAGCCCTTGTCAACAAGATGACATTTGTGTT
AGACTAGTTCAAAGGCCAATGAATCTGCAAGATTCTAGACTTGACTCATTTAATATTGAG
ATGTCAAGAGTATTCTAAATTTGGTTGAAACAACGACGGTATTGGATGCTGTTAAGCTCA
TTCTAAGAATAATGATGAAGACAGTTGTTATTTCAAGAAATGCAGGCACAAAGTAGTGCA
TTTGTTTTCAATAAATTCTTATGACACGTGTCATTCGTTAAAGATACAATGTTAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAGTCTCCCAGTTATGTCTGGACGAGGAAAGCAAGGGGGTAAAGCTCGCGCCAAGGC
CAAAACCCGGTCCTCACGGGCTGGCCTTCAGTTTCCGGTGGGCCGAGTGCACCGCCTGCT
TCGTAAAGGCAACTATGCTGAACGGGTCGGCGCAGGTGCTCCGGTGTACCTGGCGGCGGT
GCTGGAGTATCTGACCGCAGAAATCCTAGAGCTGGCGGGCAACGCAGCTCGTGACAACAA
GAAGACACGCATCATCCCGCGTCACCTACAGCTGGCCATCCGCAACGACGAGGAACTCAA
CAAGCTGCTGGGCAAAGTTACCATCGCTCAGGGCGGTGTCCTGCCCAACATCCAGGCCGT
GCTGTTGCCCAAGAAGACCGAGAGCCACCACAAAGCCAAATAAGTACTCGGCATAAAAAC
AACAAAACAAAAGGCTCTTTTCAGAGCCACTTCTATCATCATAAAAAGGTGACACTTGCA
TTTCCAATTAGCTTACCTCTTGTATTTAGCAGCCCTTGTCAACAAGATGACATTTGTGTT
AGACTAGTTCAAAGGCCAATGAATCTGCAAGATTCTAGACTTGACTCATTTAATATTGAG
ATGTCAAGAGTATTCTAAATTTGGTTGAAACAACGACGGTATTGGATGCTGTTAAGCTCA
TTCTAAGAATAATGATGAAGACAGTTGTTATTTCAAGAAATGCAGGCACAAAGTAGTGCA
TTTGTTTTCAATAAATTCTTATGACACGTGTCATTCGTTAAAGATACAATGTTAATAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96KK5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96KK5_HUMAN

ncRNA annotation: 1 entry(ies)

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               428-453, , RaveNnA Score=33.9

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               428-453, , RaveNnA Score=33.9

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               13-432, gnl|bosTau2|chr3 (17591590-17591172)
               

               
               13-432, gnl|Hg17|chr1 (146671594-146672045)
               

               
               13-432, gnl|Mm7|chr3 (96094798-96094386)
               


               
               15-399, gnl|bosTau2|chr12 (1673231-1672847)
               

               
               15-399, gnl|Hg17|chr6 (26380764-26380415)
               

               
               15-399, gnl|Mm7|chr13 (22899898-22900282)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-432, gnl|bosTau2|chr3 (17591590-17591172)
               

               
               13-432, gnl|Hg17|chr1 (146671594-146672045)
               

               
               13-432, gnl|Mm7|chr3 (96094798-96094386)
               


               
               15-399, gnl|bosTau2|chr12 (1673231-1672847)
               

               
               15-399, gnl|Hg17|chr6 (26380764-26380415)
               

               
               15-399, gnl|Mm7|chr13 (22899898-22900282)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

	13-432, gnl\|bosTau2\|chr3 (17591590-17591172)
	13-432, gnl\|Hg17\|chr1 (146671594-146672045)
	13-432, gnl\|Mm7\|chr3 (96094798-96094386)

	15-399, gnl\|bosTau2\|chr12 (1673231-1672847)
	15-399, gnl\|Hg17\|chr6 (26380764-26380415)
	15-399, gnl\|Mm7\|chr13 (22899898-22900282)

	mgp (0.230681)
	fty (0.17584)
	ill (0.175593)
	cje (0.165235)
	nco (0.161734)
	thg (0.126791)
	nbm (0.0993246)