Non-Coding RNA Search

Ss1.1-Pig4-TMW8012E05.3

Sequence:


               
               TTTTCTTTTACCAAAGGTTAAAATTCTCTGCCCTTAGCAACTCTGTGGACATCATAGGGA
TGGATGGGGAAGAGGCTGCAGTCAGCCCAGCGCTTCTAAATGCTGTTCCTGATTAATTGC
TCAGATGGTGCCCACAGAGCCTACTCACTGTGTGCTTTGCAGGTGTCAATAAAGGCCCTC
GAGGTGCCCCCGATTTGCCACCAGTCTGAGCCCATCTGCTTTCTGTCTTTCAGGATTTGT
GCAAACTTTCTGATATGCTGGTAACTCACTTTCTTATTTTTCAGCACCATTTGGGCTTTA
TGCTTGTGCATATCTGCCTTTTCTGTCATTTCAGTAGGACTTTGCAAAGAATGTCATGTG
GACATGAGTTTGCAAGCCTGCCATTCTGCCCTCCCTCAAGCATTCTTTCTTTCTTCCTTT
GGGGGGTGCAATTGATGTGACAAGGAGAGGGCACATTCAACATGGTTACCAGTAAGCACA
AATGATGTGTTTTTTAATGCCATTTCTCAGCCTCTTTTTCTTTACAATTCCTGTGGCCAG
CACAGTACAAAGTGGTAAGCAAAATAGAAATGGAGTTTTATGGATTTTTATGTCTCCCAG
TGGTGATGCTGCTTAACAGGGATTTGCTTCAGTTCATACTGAGTGGTTTAAAATCAACAA
CAGAAAAGGAATAAAAACTTTAACATTTTCGAAAGTTAAGAAAATAGGGAGAATCGCCCA
TTATTTAATCATACTAATATAACTATTGTGAGGGGGTTATTCGTTTTGAGTGCTGGTTAT
TGTTTAAGAGTTCCTTGGTGGCCTAGTGGTTAAAGTTTCAGTGTTGTCACTGCTGTAGCT
TGGGTGCAATTCCTGGCCCAGGAACGTCACATGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCTTTTACCAAAGGTTAAAATTCTCTGCCCTTAGCAACTCTGTGGACATCATAGGGA
TGGATGGGGAAGAGGCTGCAGTCAGCCCAGCGCTTCTAAATGCTGTTCCTGATTAATTGC
TCAGATGGTGCCCACAGAGCCTACTCACTGTGTGCTTTGCAGGTGTCAATAAAGGCCCTC
GAGGTGCCCCCGATTTGCCACCAGTCTGAGCCCATCTGCTTTCTGTCTTTCAGGATTTGT
GCAAACTTTCTGATATGCTGGTAACTCACTTTCTTATTTTTCAGCACCATTTGGGCTTTA
TGCTTGTGCATATCTGCCTTTTCTGTCATTTCAGTAGGACTTTGCAAAGAATGTCATGTG
GACATGAGTTTGCAAGCCTGCCATTCTGCCCTCCCTCAAGCATTCTTTCTTTCTTCCTTT
GGGGGGTGCAATTGATGTGACAAGGAGAGGGCACATTCAACATGGTTACCAGTAAGCACA
AATGATGTGTTTTTTAATGCCATTTCTCAGCCTCTTTTTCTTTACAATTCCTGTGGCCAG
CACAGTACAAAGTGGTAAGCAAAATAGAAATGGAGTTTTATGGATTTTTATGTCTCCCAG
TGGTGATGCTGCTTAACAGGGATTTGCTTCAGTTCATACTGAGTGGTTTAAAATCAACAA
CAGAAAAGGAATAAAAACTTTAACATTTTCGAAAGTTAAGAAAATAGGGAGAATCGCCCA
TTATTTAATCATACTAATATAACTATTGTGAGGGGGTTATTCGTTTTGAGTGCTGGTTAT
TGTTTAAGAGTTCCTTGGTGGCCTAGTGGTTAAAGTTTCAGTGTTGTCACTGCTGTAGCT
TGGGTGCAATTCCTGGCCCAGGAACGTCACATGCTT

ncRNA annotation: 1 entry(ies)

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               792-864, tRNA Pseudo, RaveNnA Score=25.81

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               792-864, tRNA Pseudo, RaveNnA Score=25.81

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               lun (0.150489)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               csk (0.140746)