Non-Coding RNA Search

Pla1-C0000042_E19

Sequence:


               
               CAGATAGACATTGTATTTAAAAATAGTGCTTTGCAGGAGTTCCCTGGTGGTCTAGTGGTT
AGGATTCAGCACTTTTATGACTTCAGCCCAAGTTCAGTTCTTGGTCTGGGAACTGAGATC
CCACATCAAGATGCTGCACACTGCGGCCAAAAACAAAAAAAATGATGCTTTGAGCACTTG
TCTGGAGAGAGAACAGGTATGGATTTTCTTTGTCCTAGAGCTTCCATCCTTGCTGCTATG
ATTCTTCTCCTCCTTCCTGCCACCTCATTTTTAAATGAATATATTTGACCACAGCTGAAT
AGGGCTGGGGTAGGAAAGCTTGTATTCCTAATAGAAGGATGCTTTCAATAGGGAGTCATG
CCCAGCACTGTCCTAATGAAATGGCACAGGTCTGTAGCAGCAGCATCCCTGATCACCTTA
GTTTATTTTGTCTACAGCCCTCAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATAGACATTGTATTTAAAAATAGTGCTTTGCAGGAGTTCCCTGGTGGTCTAGTGGTT
AGGATTCAGCACTTTTATGACTTCAGCCCAAGTTCAGTTCTTGGTCTGGGAACTGAGATC
CCACATCAAGATGCTGCACACTGCGGCCAAAAACAAAAAAAATGATGCTTTGAGCACTTG
TCTGGAGAGAGAACAGGTATGGATTTTCTTTGTCCTAGAGCTTCCATCCTTGCTGCTATG
ATTCTTCTCCTCCTTCCTGCCACCTCATTTTTAAATGAATATATTTGACCACAGCTGAAT
AGGGCTGGGGTAGGAAAGCTTGTATTCCTAATAGAAGGATGCTTTCAATAGGGAGTCATG
CCCAGCACTGTCCTAATGAAATGGCACAGGTCTGTAGCAGCAGCATCCCTGATCACCTTA
GTTTATTTTGTCTACAGCCCTCAAACA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               41-112, tRNA Lys, RaveNnA Score=30.02

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               41-112, tRNA Lys, RaveNnA Score=30.02