Ss1.1-LyN1-MLN01D050019.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCCGAACGTCAAACCGGGTCCATGGAAGACTACGAGCAAGTCCAAAGGGGGCCCCTGA AGCTGAAAGGTGTAGCAGAGCTCGGAGTGACCAAGCGGAAGAAGAAAAAGAAGGACAAAG ACAAGGCGAAACTCCTGGAAGCCATGGGAACGAGCAAAAAGAACGAAGAGGAGAAGCGGC GCGGCCTGGACAAGCGGACCCCGGCCCAGGCGGCTTTCGAAAAGATGCAGGAGAAGCGGC AAATGGAAAGGATCCTGAAGAAAGCATCCAAAACCCACAAGCAGAGAGTAGAGGACTTCA ACAGACACCTGGATACTCTCACAGAGCACTATGACATTCCGAAAGTCAGCTGGACGAAGT AGCCTCCCAGCCCGGGATATGGAATGGCATCAAGGGGAAGCAGAAGGCGGACTGGGGGCC ATATTTGTGCCTTTGGTATTTTCTGGAAACATTATATTACACAAACCCTTGAGTTCTCTG CTGAGACAGTGCTTTTCAAAGCAGTGTGCCCTCATTCTGGAACTTGATTAAAGTCAGACT ATCCTTTAACTCTATTTTGATTTCTCGGTAGCGTGTAGAAGAAAGAAACCTTTTTAGTTT GGACTGGAAATTTTTGAAAATTTATCCGGAGATTAAAGTTATTTCTGTGTAGGTGCCACG GGAAAGTGTTTTTACCCCGTGTTGCATCTAACTCTTGCCAGCCAGCCAGCCAGCTTTGCC TGGATGAAACAACCCCAGAGGACAAGGAGCTAATGCCAGCATGGCCTGCAGCACATAGAC CCCTGCAGGACCCTACATGGGCTGCCCTTACAAGCTTCTTCTGGCTTGGGGCTTGTGCTC TCCTGTCCAAGGCCTGTTAAAGCCACTTGCAGCCTTGTGCCCTTCAGACTGCTTCCTCAA CCACCTGGCCAGTGAGACAATGCAGCCTGGGAAACAGAACAACCACCTAAGGCAAGGATG GAAGATATGCCTTGTCCCTTTCTTTTTTTGTTGTTCTTGGGTTGGAGGGGCAGAGGGAGG GCAGGGGTGGGGGCAGTTGGCTATGGTATGCAGCAGCTTGACATGGGATCTCAATTCCCA GACTGGGGATTGAGCCCTGGCAGCAGCAGTGAAAGTGCTGAATCCTAACCACTAGGCCAC CAGCGAACTCCCCAACTTGTGGCCAGCGTGTAGTCTCTTCTCCCAATATCCCCATTCCAG ATGTATCTAGTGGGTGTTGCCATGGCAAACACCACCAAACCAGCACAGCATTCTTTGTAA TGGGACCCAGACACAGCCTGCCTTCTCACCCTCAACCCTGGGCTCCAAGCAGCCCCCCTG TATTTATTCAGAGTTGGTACATAACATGTTTGGCATTCCTGGCCTAAGGACACCTCAGGG GTGATGGGAGCAAGGCAGAGCCCCAGCACAGACAGACATGGGGCAATTGAGAGGACCTAG TTTCCTGTGCTGGAGAGCCAGGATCTTTGAGAGCCTACATGTACCCATCAAAAGAGGATT AACCTGCAAATGTTCTCGGGGAGAAGTGTGTTGACATAGATGCTGAAAGCATTAACAAAG TCCCAGAGAAAAATACAGTGTTGGGTTTGGGACTGTCATATGTGAAATGCAGAATAAAGC AAAAAAACAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCCGAACGTCAAACCGGGTCCATGGAAGACTACGAGCAAGTCCAAAGGGGGCCCCTGA AGCTGAAAGGTGTAGCAGAGCTCGGAGTGACCAAGCGGAAGAAGAAAAAGAAGGACAAAG ACAAGGCGAAACTCCTGGAAGCCATGGGAACGAGCAAAAAGAACGAAGAGGAGAAGCGGC GCGGCCTGGACAAGCGGACCCCGGCCCAGGCGGCTTTCGAAAAGATGCAGGAGAAGCGGC AAATGGAAAGGATCCTGAAGAAAGCATCCAAAACCCACAAGCAGAGAGTAGAGGACTTCA ACAGACACCTGGATACTCTCACAGAGCACTATGACATTCCGAAAGTCAGCTGGACGAAGT AGCCTCCCAGCCCGGGATATGGAATGGCATCAAGGGGAAGCAGAAGGCGGACTGGGGGCC ATATTTGTGCCTTTGGTATTTTCTGGAAACATTATATTACACAAACCCTTGAGTTCTCTG CTGAGACAGTGCTTTTCAAAGCAGTGTGCCCTCATTCTGGAACTTGATTAAAGTCAGACT ATCCTTTAACTCTATTTTGATTTCTCGGTAGCGTGTAGAAGAAAGAAACCTTTTTAGTTT GGACTGGAAATTTTTGAAAATTTATCCGGAGATTAAAGTTATTTCTGTGTAGGTGCCACG GGAAAGTGTTTTTACCCCGTGTTGCATCTAACTCTTGCCAGCCAGCCAGCCAGCTTTGCC TGGATGAAACAACCCCAGAGGACAAGGAGCTAATGCCAGCATGGCCTGCAGCACATAGAC CCCTGCAGGACCCTACATGGGCTGCCCTTACAAGCTTCTTCTGGCTTGGGGCTTGTGCTC TCCTGTCCAAGGCCTGTTAAAGCCACTTGCAGCCTTGTGCCCTTCAGACTGCTTCCTCAA CCACCTGGCCAGTGAGACAATGCAGCCTGGGAAACAGAACAACCACCTAAGGCAAGGATG GAAGATATGCCTTGTCCCTTTCTTTTTTTGTTGTTCTTGGGTTGGAGGGGCAGAGGGAGG GCAGGGGTGGGGGCAGTTGGCTATGGTATGCAGCAGCTTGACATGGGATCTCAATTCCCA GACTGGGGATTGAGCCCTGGCAGCAGCAGTGAAAGTGCTGAATCCTAACCACTAGGCCAC CAGCGAACTCCCCAACTTGTGGCCAGCGTGTAGTCTCTTCTCCCAATATCCCCATTCCAG ATGTATCTAGTGGGTGTTGCCATGGCAAACACCACCAAACCAGCACAGCATTCTTTGTAA TGGGACCCAGACACAGCCTGCCTTCTCACCCTCAACCCTGGGCTCCAAGCAGCCCCCCTG TATTTATTCAGAGTTGGTACATAACATGTTTGGCATTCCTGGCCTAAGGACACCTCAGGG GTGATGGGAGCAAGGCAGAGCCCCAGCACAGACAGACATGGGGCAATTGAGAGGACCTAG TTTCCTGTGCTGGAGAGCCAGGATCTTTGAGAGCCTACATGTACCCATCAAAAGAGGATT AACCTGCAAATGTTCTCGGGGAGAAGTGTGTTGACATAGATGCTGAAAGCATTAACAAAG TCCCAGAGAAAAATACAGTGTTGGGTTTGGGACTGTCATATGTGAAATGCAGAATAAAGC AAAAAAACAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1016-1135, + strand, RNAz p=0.868233 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1016-1135, + strand, RNAz p=0.868233 |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 1146-1075, , RaveNnA Score=26.02 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 97-239, gnl|bosTau2|chr7 (5125301-5125443) | |
| 97-239, gnl|canFam2|chr10 (39454213-39454076) | |
| 97-239, gnl|dasNov1|scaffold_5032 (16705-16588) | |
| 97-239, gnl|echTel1|scaffold_324587 (51009-51147) | |
| 97-239, gnl|hg17|chr18 (63526260-63526398) | |
| 97-239, gnl|Hg17|chr19 (16157434-16157576) | |
| 97-239, gnl|loxAfr1|scaffold_19553 (56258-56121) | |
| 97-239, gnl|mm7|chr7_random (755646-755792) | |
| 97-239, gnl|Mm7|chr8 (70742951-70743093) | |
| 97-239, gnl|oryCun1|scaffold_189792 (12786-12926) | |
| 97-239, gnl|panTro1|chr17 (60465669-60465807) | |
| 97-239, gnl|rheMac2|chr18 (61268796-61268933) | |
| 97-239, gnl|rn3|chr1 (90948100-90948237) | |
| 976-1152, gnl|bosTau2|chr22 (41703378-41703210) | |
| 1158-1358, gnl|bosTau2|chr7 (5131336-5131540) | |
| 1158-1358, gnl|canFam2|chr3 (63100005-63100273) | |
| 1158-1358, gnl|canFam2|chr9 (48612013-48611069) | |
| 1158-1358, gnl|dasNov1|scaffold_122319 (2135-2958) | |
| 1158-1358, gnl|dasNov1|scaffold_5032 (17404-17665) | |
| 1158-1358, gnl|echTel1|scaffold_324587 (50807-50002) | |
| 1158-1358, gnl|echTel1|scaffold_92764 (1059-790) | |
| 1158-1358, gnl|hg17|chr12 (49629884-49630134) | |
| 1158-1358, gnl|Hg17|chr19 (16163386-16163572) | |
| 1158-1358, gnl|hg17|chr22 (16069730-16070616) | |
| 1158-1358, gnl|loxAfr1|scaffold_83431 (3810-4617) | |
| 1158-1358, gnl|loxAfr1|scaffold_83431 (4209-4434) | |
| 1158-1358, gnl|mm7|chr7_random (755430-754809) | |
| 1158-1358, gnl|oryCun1|scaffold_189792 (12538-11708) | |
| 1158-1358, gnl|oryCun1|scaffold_189792 (12152-11907) | |
| 1158-1358, gnl|panTro1|chr10 (50847694-50847945) | |
| 1158-1358, gnl|panTro1|chr23 (15930585-15931471) | |
| 1158-1358, gnl|rheMac2|chr10 (61862186-61863073) | |
| 1158-1358, gnl|rheMac2|chr11 (48096366-48096616) | |
| 1158-1358, gnl|rn3|chr18 (42297476-42297200) | |
| 1158-1358, gnl|rn3|chrX (36755996-36755202) | |
| 1391-1626, gnl|bosTau2|chr7 (5131543-5131778) | |
| 1391-1626, gnl|canFam2|chr10 (39455484-39455159) | |
| 1391-1626, gnl|canFam2|chr20 (49295723-49295346) | |
| 1391-1626, gnl|canFam2|chr3 (63100275-63100495) | |
| 1391-1626, gnl|canFam2|chr9 (48612013-48611069) | |
| 1391-1626, gnl|dasNov1|scaffold_122319 (2135-2958) | |
| 1391-1626, gnl|dasNov1|scaffold_122319 (2689-3054) | |
| 1391-1626, gnl|dasNov1|scaffold_5032 (17925-17612) | |
| 1391-1626, gnl|dasNov1|scaffold_5032 (17667-17880) | |
| 1391-1626, gnl|echTel1|scaffold_277247 (45743-45394) | |
| 1391-1626, gnl|echTel1|scaffold_324587 (50807-50002) | |
| 1391-1626, gnl|echTel1|scaffold_324587 (49942-50225) | |
| 1391-1626, gnl|echTel1|scaffold_92764 (789-606) | |
| 1391-1626, gnl|hg17|chr12 (49630135-49630360) | |
| 1391-1626, gnl|hg17|chr18 (63525074-63525400) | |
| 1391-1626, gnl|hg17|chr19 (16163485-16163871) | |
| 1391-1626, gnl|Hg17|chr19 (16163605-16163843) | |
| 1391-1626, gnl|hg17|chr22 (16069730-16070616) | |
| 1391-1626, gnl|loxAfr1|scaffold_83431 (3810-4617) | |
| 1391-1626, gnl|loxAfr1|scaffold_83431 (4679-4411) | |
| 1391-1626, gnl|loxAfr1|scaffold_83431 (4435-4638) | |
| 1391-1626, gnl|loxAfr1|scaffold_83431 (4380-4692) | |
| 1391-1626, gnl|mm7|chr18 (48219486-48219280) | |
| 1391-1626, gnl|mm7|chr7_random (755430-754809) | |
| 1391-1626, gnl|mm7|chr8 (70745744-70746049) | |
| 1391-1626, gnl|oryCun1|scaffold_189792 (12538-11708) | |
| 1391-1626, gnl|oryCun1|scaffold_189792 (11648-11952) | |
| 1391-1626, gnl|oryCun1|scaffold_189792 (11905-11700) | |
| 1391-1626, gnl|oryCun1|scaffold_189792 (11986-11643) | |
| 1391-1626, gnl|panTro1|chr10 (50847946-50848170) | |
| 1391-1626, gnl|panTro1|chr17 (60464471-60464807) | |
| 1391-1626, gnl|panTro1|chr20 (16841232-16841618) | |
| 1391-1626, gnl|panTro1|chr23 (15930585-15931471) | |
| 1391-1626, gnl|rheMac2|chr10 (61862186-61863073) | |
| 1391-1626, gnl|rheMac2|chr11 (48096617-48096842) | |
| 1391-1626, gnl|rheMac2|chr18 (61267615-61267940) | |
| 1391-1626, gnl|rheMac2|chr19 (15727929-15728308) | |
| 1391-1626, gnl|rn3|chr16 (18026661-18026359) | |
| 1391-1626, gnl|rn3|chr18 (42297199-42296990) | |
| 1391-1626, gnl|rn3|chrX (36755996-36755202) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-239, gnl|bosTau2|chr7 (5125301-5125443) | |
| 97-239, gnl|canFam2|chr10 (39454213-39454076) | |
| 97-239, gnl|dasNov1|scaffold_5032 (16705-16588) | |
| 97-239, gnl|echTel1|scaffold_324587 (51009-51147) | |
| 97-239, gnl|hg17|chr18 (63526260-63526398) | |
| 97-239, gnl|Hg17|chr19 (16157434-16157576) | |
| 97-239, gnl|loxAfr1|scaffold_19553 (56258-56121) | |
| 97-239, gnl|mm7|chr7_random (755646-755792) | |
| 97-239, gnl|Mm7|chr8 (70742951-70743093) | |
| 97-239, gnl|oryCun1|scaffold_189792 (12786-12926) | |
| 97-239, gnl|panTro1|chr17 (60465669-60465807) | |
| 97-239, gnl|rheMac2|chr18 (61268796-61268933) | |
| 97-239, gnl|rn3|chr1 (90948100-90948237) | |
| 976-1152, gnl|bosTau2|chr22 (41703378-41703210) | |
| 1158-1358, gnl|bosTau2|chr7 (5131336-5131540) | |
| 1158-1358, gnl|canFam2|chr3 (63100005-63100273) | |
| 1158-1358, gnl|canFam2|chr9 (48612013-48611069) | |
| 1158-1358, gnl|dasNov1|scaffold_122319 (2135-2958) | |
| 1158-1358, gnl|dasNov1|scaffold_5032 (17404-17665) | |
| 1158-1358, gnl|echTel1|scaffold_324587 (50807-50002) | |
| 1158-1358, gnl|echTel1|scaffold_92764 (1059-790) | |
| 1158-1358, gnl|hg17|chr12 (49629884-49630134) | |
| 1158-1358, gnl|Hg17|chr19 (16163386-16163572) | |
| 1158-1358, gnl|hg17|chr22 (16069730-16070616) | |
| 1158-1358, gnl|loxAfr1|scaffold_83431 (3810-4617) | |
| 1158-1358, gnl|loxAfr1|scaffold_83431 (4209-4434) | |
| 1158-1358, gnl|mm7|chr7_random (755430-754809) | |
| 1158-1358, gnl|oryCun1|scaffold_189792 (12538-11708) | |
| 1158-1358, gnl|oryCun1|scaffold_189792 (12152-11907) | |
| 1158-1358, gnl|panTro1|chr10 (50847694-50847945) | |
| 1158-1358, gnl|panTro1|chr23 (15930585-15931471) | |
| 1158-1358, gnl|rheMac2|chr10 (61862186-61863073) | |
| 1158-1358, gnl|rheMac2|chr11 (48096366-48096616) | |
| 1158-1358, gnl|rn3|chr18 (42297476-42297200) | |
| 1158-1358, gnl|rn3|chrX (36755996-36755202) | |
| 1391-1626, gnl|bosTau2|chr7 (5131543-5131778) | |
| 1391-1626, gnl|canFam2|chr10 (39455484-39455159) | |
| 1391-1626, gnl|canFam2|chr20 (49295723-49295346) | |
| 1391-1626, gnl|canFam2|chr3 (63100275-63100495) | |
| 1391-1626, gnl|canFam2|chr9 (48612013-48611069) | |
| 1391-1626, gnl|dasNov1|scaffold_122319 (2135-2958) | |
| 1391-1626, gnl|dasNov1|scaffold_122319 (2689-3054) | |
| 1391-1626, gnl|dasNov1|scaffold_5032 (17925-17612) | |
| 1391-1626, gnl|dasNov1|scaffold_5032 (17667-17880) | |
| 1391-1626, gnl|echTel1|scaffold_277247 (45743-45394) | |
| 1391-1626, gnl|echTel1|scaffold_324587 (50807-50002) | |
| 1391-1626, gnl|echTel1|scaffold_324587 (49942-50225) | |
| 1391-1626, gnl|echTel1|scaffold_92764 (789-606) | |
| 1391-1626, gnl|hg17|chr12 (49630135-49630360) | |
| 1391-1626, gnl|hg17|chr18 (63525074-63525400) | |
| 1391-1626, gnl|hg17|chr19 (16163485-16163871) | |
| 1391-1626, gnl|Hg17|chr19 (16163605-16163843) | |
| 1391-1626, gnl|hg17|chr22 (16069730-16070616) | |
| 1391-1626, gnl|loxAfr1|scaffold_83431 (3810-4617) | |
| 1391-1626, gnl|loxAfr1|scaffold_83431 (4679-4411) | |
| 1391-1626, gnl|loxAfr1|scaffold_83431 (4435-4638) | |
| 1391-1626, gnl|loxAfr1|scaffold_83431 (4380-4692) | |
| 1391-1626, gnl|mm7|chr18 (48219486-48219280) | |
| 1391-1626, gnl|mm7|chr7_random (755430-754809) | |
| 1391-1626, gnl|mm7|chr8 (70745744-70746049) | |
| 1391-1626, gnl|oryCun1|scaffold_189792 (12538-11708) | |
| 1391-1626, gnl|oryCun1|scaffold_189792 (11648-11952) | |
| 1391-1626, gnl|oryCun1|scaffold_189792 (11905-11700) | |
| 1391-1626, gnl|oryCun1|scaffold_189792 (11986-11643) | |
| 1391-1626, gnl|panTro1|chr10 (50847946-50848170) | |
| 1391-1626, gnl|panTro1|chr17 (60464471-60464807) | |
| 1391-1626, gnl|panTro1|chr20 (16841232-16841618) | |
| 1391-1626, gnl|panTro1|chr23 (15930585-15931471) | |
| 1391-1626, gnl|rheMac2|chr10 (61862186-61863073) | |
| 1391-1626, gnl|rheMac2|chr11 (48096617-48096842) | |
| 1391-1626, gnl|rheMac2|chr18 (61267615-61267940) | |
| 1391-1626, gnl|rheMac2|chr19 (15727929-15728308) | |
| 1391-1626, gnl|rn3|chr16 (18026661-18026359) | |
| 1391-1626, gnl|rn3|chr18 (42297199-42296990) | |
| 1391-1626, gnl|rn3|chrX (36755996-36755202) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| cje (0.826173) | |
| fce (0.543183) | |
| cut (0.509771) | |
| che (0.408942) | |
| sin (0.349895) | |
| duo (0.345602) | |
| jej (0.296765) | |
| fat (0.294855) | |
| cst (0.280073) | |
| cga (0.279096) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| nmm (0.265604) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.826173) | |
| fce (0.543183) | |
| cut (0.509771) | |
| che (0.408942) | |
| sin (0.349895) | |
| duo (0.345602) | |
| jej (0.296765) | |
| fat (0.294855) | |
| cst (0.280073) | |
| cga (0.279096) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| nmm (0.265604) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |