Non-Coding RNA Search

Ss1.1-Liv1-LVRM10156E03.5

Sequence:


               
               ACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGA
GAATTAATGTGAATTGCAGGACGCATTGATCATCGACACTTCGAACGCACTTGCGGCCCC
GGGTTCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGGTTCACGTGATCGCGCCGGGGG
AGAAAACGCCTGACCCAAACCCCCGGCCTTCACTGTAAGCCCTTTCTTCTAGTGGCTCGT
CGGCCTCCAGCCCTCCAGTCACCTGTGCGGCTCTCCACTCCACCCGGGGTCTCCCCCGGA
GCCCTGTCAGCCATGCGGCTCCTGCCTCTGGCCTCAGGTGGGCCGCGGCGGGGCAGTCCC
CGTCACCTGCCCTCCTGTAGCCCAGCGCTGCTGCTGCTGCTGTGTGGCTGCCTGGGGGTC
TCCCGGGTGGCGGCGGCTGACTCTCGGAGGCCCAATGTGGTGCTGCTCCTCGCCGACGAC
CAGGACGAAGTGCTCGGCGGCATGACACCTCTAAAGAAAACCAAGGCTCTCATCGGAGAG
ATGGGGATGACTTTCTCCAGTGCTTATGTGCCAAGTGCTCTTTGTTGCCCAAGCCGAGCC
AGTATCCTGACAGGGAAGTACCCACATAATCATCACGTTGTTAACAACACTTTGGAGGGA
AACTGCAGCAGTAAGTCTTGGCAGAAGATCGAAGAACCAAATACTTTCCCAGCGATTCTC
AGATCAGTGTGTGGTTATCAAACCTTTTTTGCAGGGAAATACTTAAATGAGTATGGAGCC
CCAGATGCAGGTGGACTAGCACATGTTCCTCTGGGCTGGAGTTACTGGTATGCCTTGGAA
AAGAATTCTAAATACTATAACTATACCCTCTCCATCAATGGGAAGGCACGGAAGCATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGA
GAATTAATGTGAATTGCAGGACGCATTGATCATCGACACTTCGAACGCACTTGCGGCCCC
GGGTTCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGGTTCACGTGATCGCGCCGGGGG
AGAAAACGCCTGACCCAAACCCCCGGCCTTCACTGTAAGCCCTTTCTTCTAGTGGCTCGT
CGGCCTCCAGCCCTCCAGTCACCTGTGCGGCTCTCCACTCCACCCGGGGTCTCCCCCGGA
GCCCTGTCAGCCATGCGGCTCCTGCCTCTGGCCTCAGGTGGGCCGCGGCGGGGCAGTCCC
CGTCACCTGCCCTCCTGTAGCCCAGCGCTGCTGCTGCTGCTGTGTGGCTGCCTGGGGGTC
TCCCGGGTGGCGGCGGCTGACTCTCGGAGGCCCAATGTGGTGCTGCTCCTCGCCGACGAC
CAGGACGAAGTGCTCGGCGGCATGACACCTCTAAAGAAAACCAAGGCTCTCATCGGAGAG
ATGGGGATGACTTTCTCCAGTGCTTATGTGCCAAGTGCTCTTTGTTGCCCAAGCCGAGCC
AGTATCCTGACAGGGAAGTACCCACATAATCATCACGTTGTTAACAACACTTTGGAGGGA
AACTGCAGCAGTAAGTCTTGGCAGAAGATCGAAGAACCAAATACTTTCCCAGCGATTCTC
AGATCAGTGTGTGGTTATCAAACCTTTTTTGCAGGGAAATACTTAAATGAGTATGGAGCC
CCAGATGCAGGTGGACTAGCACATGTTCCTCTGGGCTGGAGTTACTGGTATGCCTTGGAA
AAGAATTCTAAATACTATAACTATACCCTCTCCATCAATGGGAAGGCACGGAAGCATGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61810053|ref|XP_589961.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810053|ref|XP_589961.1|

ncRNA annotation: 2 entry(ies)

Help | Less info


               
               4-155, RF00002;5_8S_rRNA; (AY452494.1/1139-1292), blast E-value=0
               

               
               3-155, , RaveNnA Score=156.17

ncRNA annotation: 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               4-155, RF00002;5_8S_rRNA; (AY452494.1/1139-1292), blast E-value=0
               

               
               3-155, , RaveNnA Score=156.17

	4-155, RF00002;5_8S_rRNA; (AY452494.1/1139-1292), blast E-value=0
	3-155, , RaveNnA Score=156.17