Non-Coding RNA Search

Ss1.1-rfty515b_e21.5

Sequence:


               
               GATGATCCCATCAGCTTTAAGGCGGGGAACAACCAGCTTTGTGAAATATATTAAATTTAT
TCTTCACAGGAAAGTGAAGAAGCTAAGAGGCTAAGAGAAGAACGCCTTGCACAGTATGAG
TCAAAGAAAGCCAAAAGTAGGTCATTTTATAATTTGTATATAACTTAATTCTTTTCGTAA
TAACATGAATAATCTTTTCCAAAGATTGATTCCCAAAGTTTCCTCCACATTCCTTGAATA
CATATTTCAATATCTTCTTTTGAGGCAGAGCTTCAAAACTTCCACAGCTACTGGTCTGCA
GCTGTTCGCATGGTAGCAACTGCAGCATTCCTCTGTGGGAAAAAAACTGTTACACAACTA
AACACCTCTTTCTTAGCCAAACAGAAAGTGGGCATGTGTGTGACAAACACAAGATGTATT
TTCTATAACTATATGGCTGAGGAGGAGGATCCATTTAGAGACATTAAGATTCCATTAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGATCCCATCAGCTTTAAGGCGGGGAACAACCAGCTTTGTGAAATATATTAAATTTAT
TCTTCACAGGAAAGTGAAGAAGCTAAGAGGCTAAGAGAAGAACGCCTTGCACAGTATGAG
TCAAAGAAAGCCAAAAGTAGGTCATTTTATAATTTGTATATAACTTAATTCTTTTCGTAA
TAACATGAATAATCTTTTCCAAAGATTGATTCCCAAAGTTTCCTCCACATTCCTTGAATA
CATATTTCAATATCTTCTTTTGAGGCAGAGCTTCAAAACTTCCACAGCTACTGGTCTGCA
GCTGTTCGCATGGTAGCAACTGCAGCATTCCTCTGTGGGAAAAAAACTGTTACACAACTA
AACACCTCTTTCTTAGCCAAACAGAAAGTGGGCATGTGTGTGACAAACACAAGATGTATT
TTCTATAACTATATGGCTGAGGAGGAGGATCCATTTAGAGACATTAAGATTCCATTAAGC

ncRNA annotation: 1 entry(ies)

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               280-412, RF00403;snoACA41; (AL645950.13/74028-74159) : ACA41 
(gnl|combinedlit|LIT1347), RaveNnA Score=74.6

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               280-412, RF00403;snoACA41; (AL645950.13/74028-74159) : ACA41 
(gnl|combinedlit|LIT1347), RaveNnA Score=74.6

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)